SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    585801 6yef:2 (3.2) BS01 rna ? GO:0003735 ... P0A0G2 32852796
    585802 6yef:3 (3.2) BS01 rna ? GO:0003735 ... Q2FWD8 32852796
    585803 6yef:4 (3.2) BS01 rna ? GO:0003735 ... Q2FZF1 32852796
    585804 6yef:5 (3.2) BS01 rna ? GO:0003735 ... Q2FY22 32852796
    585805 6yef:6 (3.2) BS01 rna ? GO:0003735 ... Q2FUQ0 32852796
    585806 6yef:7 (3.2) BS01 rna ? GO:0003735 ... Q2FXQ0 32852796
    585807 6yef:8 (3.2) BS01 rna ? GO:0003735 ... Q2FW29 32852796
    585808 6yef:D (3.2) BS01 rna ? GO:0002181 ... P60430 32852796
    585809 6yef:E (3.2) BS01 rna ? GO:0003735 ... Q2FW06 32852796
    585810 6yef:F (3.2) BS01 rna ? GO:0003735 ... Q2FW07 32852796
    585811 6yef:G (3.2) BS01 rna ? GO:0000049 ... Q2FW18 32852796
    585812 6yef:G (3.2) BS02 rna ? GO:0000049 ... Q2FW18 32852796
    585813 6yef:H (3.2) BS01 rna ? GO:0002181 ... Q2FW21 32852796
    585814 6yef:M (3.2) BS01 rna ? GO:0003729 ... Q2FW38 32852796
    585815 6yef:N (3.2) BS01 rna ? GO:0003735 ... Q2FW16 32852796
    585816 6yef:N (3.2) BS02 rna ? GO:0003735 ... Q2FW16 32852796
    585817 6yef:O (3.2) BS01 rna ? GO:0003735 ... P0A0F8 32852796
    585818 6yef:P (3.2) BS01 rna ? GO:0000049 ... Q2FW13 32852796
    585819 6yef:Q (3.2) BS01 rna ? GO:0003735 ... Q2FW33 32852796
    585820 6yef:R (3.2) BS01 rna ? GO:0003735 ... Q2FW22 32852796
    585821 6yef:R (3.2) BS02 rna ? GO:0003735 ... Q2FW22 32852796
    585822 6yef:S (3.2) BS01 rna ? GO:0003735 ... Q2FZ42 32852796
    585823 6yef:S (3.2) BS02 rna ? GO:0003735 ... Q2FZ42 32852796
    585824 6yef:T (3.2) BS01 rna ? GO:0000027 ... Q2FXQ1 32852796
    585825 6yef:U (3.2) BS01 rna ? GO:0003723 ... Q2FXS8 32852796
    585826 6yef:V (3.2) BS01 rna ? GO:0003735 ... Q2FW11 32852796
    585827 6yef:W (3.2) BS01 rna ? GO:0003735 ... Q2FW08 32852796
    585828 6yef:X (3.2) BS01 rna ? GO:0003723 ... Q2FW17 32852796
    585829 6yef:Y (3.2) BS01 rna ? GO:0003723 ... Q2G0S0 32852796
    585830 6yef:Z (3.2) BS01 rna ? GO:0003735 ... Q2FXT0 32852796
    585831 6yef:b (3.2) BS01 rna ? GO:0003735 ... Q2FZ25 32852796
    585832 6yef:c (3.2) BS01 rna ? GO:0003676 ... Q2FW12 32852796
    585833 6yef:d (3.2) BS01 rna ? GO:0003723 ... Q2FXK6 32852796
    585834 6yef:e (3.2) BS01 rna ? GO:0003723 ... Q2FW23 32852796
    585835 6yef:e (3.2) BS02 rna ? GO:0003723 ... Q2FW23 32852796
    585836 6yef:f (3.2) BS01 rna ? GO:0003735 ... Q2G113 32852796
    585837 6yef:g (3.2) BS01 rna ? GO:0000028 ... P48940 32852796
    585838 6yef:h (3.2) BS01 rna ? GO:0003735 ... Q2FW20 32852796
    585839 6yef:i (3.2) BS01 rna ? GO:0003723 ... Q2FW39 32852796
    585840 6yef:i (3.2) BS02 rna ? GO:0003723 ... Q2FW39 32852796
    585841 6yef:j (3.2) BS01 rna N/A GO:0003723 ... N/A 32852796
    585842 6yef:k (3.2) BS01 rna ? GO:0003735 ... Q2FW31 32852796
    585843 6yef:l (3.2) BS01 rna ? GO:0000049 ... P0A0H0 32852796
    585844 6yef:m (3.2) BS01 rna ? GO:0000049 ... Q2FW30 32852796
    585845 6yef:m (3.2) BS02 rna ? GO:0000049 ... Q2FW30 32852796
    585846 6yef:n (3.2) BS01 rna ? GO:0003735 ... Q2FYU5 32852796
    585847 6yef:o (3.2) BS01 rna ? GO:0003735 ... Q2G2Q1 32852796
    585848 6yef:o (3.2) BS02 rna ? GO:0003735 ... Q2G2Q1 32852796
    585849 6yef:p (3.2) BS01 rna ? GO:0003735 ... Q2FZ45 32852796
    585850 6yef:q (3.2) BS01 rna ? GO:0003735 ... Q2FW15 32852796
    585851 6yef:r (3.2) BS01 rna ? GO:0003735 ... Q2G111 32852796
    585852 6yef:s (3.2) BS01 rna ? GO:0000028 ... Q2FW10 32852796
    585853 6yef:t (3.2) BS01 rna ? GO:0003723 ... Q2FXY6 32852796
    585854 6yeh:A (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585855 6yeh:B (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585856 6yeh:C (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585857 6yeh:D (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585858 6yeh:E (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585859 6yeh:F (2.59) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585860 6yei:A (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    585861 6yei:A (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585862 6yei:B (2.02) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585863 6yei:B (2.02) BS02 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    585864 6yei:C (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    585865 6yei:C (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585866 6yei:D (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    585867 6yei:D (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585868 6yei:E (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    585869 6yei:E (2.02) BS02 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585870 6yei:F (2.02) BS01 K 1.4.1.3 GO:0004352 ... Q43314 32655590
    585871 6yei:F (2.02) BS02 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    585872 6yei:F (2.02) BS03 AKG 1.4.1.3 GO:0004352 ... Q43314 32655590
    585873 6yem:A (2.5) BS01 MN 3.1.-.- GO:0003723 ... C3W5X6 32883638
    585874 6yem:A (2.5) BS02 MN 3.1.-.- GO:0003723 ... C3W5X6 32883638
    585875 6yem:A (2.5) BS03 OOH 3.1.-.- GO:0003723 ... C3W5X6 32883638 MOAD: ic50=0.29uM
    585876 6yen:A (1.418) BS01 KJK 3.5.2.6 GO:0008800 ... P00811 32545682
    585877 6yen:A (1.418) BS02 K9K 3.5.2.6 GO:0008800 ... P00811 32545682
    585878 6yeo:A (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    585879 6yeo:B (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    585880 6yeo:C (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    585881 6yeo:D (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    585882 6yes:A (4.1) BS01 ZN ? GO:0046872 ... M9U4Y8 33239638
    585883 6yet:A (-1.00) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    585884 6yeu:A (-1.00) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    585885 6yez:1 (2.7) BS01 CLA N/A GO:0009765 ... N/A 33020607
    585886 6yez:1 (2.7) BS02 CLA N/A GO:0009765 ... N/A 33020607
    585887 6yez:1 (2.7) BS03 CLA N/A GO:0009765 ... N/A 33020607
    585888 6yez:1 (2.7) BS04 CLA N/A GO:0009765 ... N/A 33020607
    585889 6yez:1 (2.7) BS05 CLA N/A GO:0009765 ... N/A 33020607
    585890 6yez:1 (2.7) BS06 CLA N/A GO:0009765 ... N/A 33020607
    585891 6yez:1 (2.7) BS07 CLA N/A GO:0009765 ... N/A 33020607
    585892 6yez:1 (2.7) BS08 CLA N/A GO:0009765 ... N/A 33020607
    585893 6yez:1 (2.7) BS09 CLA N/A GO:0009765 ... N/A 33020607
    585894 6yez:1 (2.7) BS10 CLA N/A GO:0009765 ... N/A 33020607
    585895 6yez:1 (2.7) BS11 CHL N/A GO:0009765 ... N/A 33020607
    585896 6yez:1 (2.7) BS12 CLA N/A GO:0009765 ... N/A 33020607
    585897 6yez:1 (2.7) BS13 CHL N/A GO:0009765 ... N/A 33020607
    585898 6yez:1 (2.7) BS14 CLA N/A GO:0009765 ... N/A 33020607
    585899 6yez:1 (2.7) BS15 CLA N/A GO:0009765 ... N/A 33020607
    585900 6yez:1 (2.7) BS16 CHL N/A GO:0009765 ... N/A 33020607
    585901 6yez:2 (2.7) BS01 CLA ? GO:0009765 ... Q41038 33020607
    585902 6yez:2 (2.7) BS02 CLA ? GO:0009765 ... Q41038 33020607
    585903 6yez:2 (2.7) BS03 CLA ? GO:0009765 ... Q41038 33020607
    585904 6yez:2 (2.7) BS04 CLA ? GO:0009765 ... Q41038 33020607
    585905 6yez:2 (2.7) BS05 CLA ? GO:0009765 ... Q41038 33020607
    585906 6yez:2 (2.7) BS06 CLA ? GO:0009765 ... Q41038 33020607
    585907 6yez:2 (2.7) BS07 CLA ? GO:0009765 ... Q41038 33020607
    585908 6yez:2 (2.7) BS08 CLA ? GO:0009765 ... Q41038 33020607
    585909 6yez:2 (2.7) BS09 CHL ? GO:0009765 ... Q41038 33020607
    585910 6yez:2 (2.7) BS10 CHL ? GO:0009765 ... Q41038 33020607
    585911 6yez:2 (2.7) BS11 CLA ? GO:0009765 ... Q41038 33020607
    585912 6yez:2 (2.7) BS12 CHL ? GO:0009765 ... Q41038 33020607
    585913 6yez:2 (2.7) BS13 CHL ? GO:0009765 ... Q41038 33020607
    585914 6yez:2 (2.7) BS14 CHL ? GO:0009765 ... Q41038 33020607
    585915 6yez:2 (2.7) BS15 CLA ? GO:0009765 ... Q41038 33020607
    585916 6yez:3 (2.7) BS01 CLA ? GO:0009765 ... Q32904 33020607
    585917 6yez:3 (2.7) BS02 CA ? GO:0009765 ... Q32904 33020607
    585918 6yez:3 (2.7) BS03 CHL ? GO:0009765 ... Q32904 33020607
    585919 6yez:3 (2.7) BS04 CLA ? GO:0009765 ... Q32904 33020607
    585920 6yez:3 (2.7) BS05 CLA ? GO:0009765 ... Q32904 33020607
    585921 6yez:3 (2.7) BS06 CLA ? GO:0009765 ... Q32904 33020607
    585922 6yez:3 (2.7) BS07 CHL ? GO:0009765 ... Q32904 33020607
    585923 6yez:3 (2.7) BS08 CLA ? GO:0009765 ... Q32904 33020607
    585924 6yez:3 (2.7) BS09 CLA ? GO:0009765 ... Q32904 33020607
    585925 6yez:3 (2.7) BS10 CLA ? GO:0009765 ... Q32904 33020607
    585926 6yez:3 (2.7) BS11 CLA ? GO:0009765 ... Q32904 33020607
    585927 6yez:3 (2.7) BS12 CHL ? GO:0009765 ... Q32904 33020607
    585928 6yez:3 (2.7) BS13 CLA ? GO:0009765 ... Q32904 33020607
    585929 6yez:3 (2.7) BS14 CLA ? GO:0009765 ... Q32904 33020607
    585930 6yez:3 (2.7) BS15 CLA ? GO:0009765 ... Q32904 33020607
    585931 6yez:3 (2.7) BS16 CLA ? GO:0009765 ... Q32904 33020607
    585932 6yez:4 (2.7) BS01 CLA ? GO:0009765 ... Q9SQL2 33020607
    585933 6yez:4 (2.7) BS02 CHL ? GO:0009765 ... Q9SQL2 33020607
    585934 6yez:4 (2.7) BS03 CLA ? GO:0009765 ... Q9SQL2 33020607
    585935 6yez:4 (2.7) BS04 CLA ? GO:0009765 ... Q9SQL2 33020607
    585936 6yez:4 (2.7) BS05 CLA ? GO:0009765 ... Q9SQL2 33020607
    585937 6yez:4 (2.7) BS06 CLA ? GO:0009765 ... Q9SQL2 33020607
    585938 6yez:4 (2.7) BS07 CLA ? GO:0009765 ... Q9SQL2 33020607
    585939 6yez:4 (2.7) BS08 CLA ? GO:0009765 ... Q9SQL2 33020607
    585940 6yez:4 (2.7) BS09 CLA ? GO:0009765 ... Q9SQL2 33020607
    585941 6yez:4 (2.7) BS10 CHL ? GO:0009765 ... Q9SQL2 33020607
    585942 6yez:4 (2.7) BS11 CHL ? GO:0009765 ... Q9SQL2 33020607
    585943 6yez:4 (2.7) BS12 CLA ? GO:0009765 ... Q9SQL2 33020607
    585944 6yez:4 (2.7) BS13 CHL ? GO:0009765 ... Q9SQL2 33020607
    585945 6yez:4 (2.7) BS14 CHL ? GO:0009765 ... Q9SQL2 33020607
    585946 6yez:4 (2.7) BS15 CLA ? GO:0009765 ... Q9SQL2 33020607
    585947 6yez:A (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585948 6yez:A (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585949 6yez:A (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585950 6yez:A (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585951 6yez:A (2.7) BS05 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585952 6yez:A (2.7) BS06 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585953 6yez:A (2.7) BS07 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585954 6yez:A (2.7) BS08 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585955 6yez:A (2.7) BS09 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585956 6yez:A (2.7) BS10 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585957 6yez:A (2.7) BS11 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585958 6yez:A (2.7) BS12 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585959 6yez:A (2.7) BS13 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585960 6yez:A (2.7) BS14 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585961 6yez:A (2.7) BS15 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585962 6yez:A (2.7) BS16 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585963 6yez:A (2.7) BS17 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585964 6yez:A (2.7) BS18 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585965 6yez:A (2.7) BS19 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585966 6yez:A (2.7) BS20 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585967 6yez:A (2.7) BS21 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585968 6yez:A (2.7) BS22 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585969 6yez:A (2.7) BS23 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585970 6yez:A (2.7) BS24 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585971 6yez:A (2.7) BS25 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585972 6yez:A (2.7) BS26 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585973 6yez:A (2.7) BS27 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585974 6yez:A (2.7) BS28 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585975 6yez:A (2.7) BS29 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585976 6yez:A (2.7) BS30 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585977 6yez:A (2.7) BS31 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585978 6yez:A (2.7) BS32 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585979 6yez:A (2.7) BS33 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585980 6yez:A (2.7) BS34 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585981 6yez:A (2.7) BS35 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585982 6yez:A (2.7) BS36 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585983 6yez:A (2.7) BS37 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585984 6yez:A (2.7) BS38 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585985 6yez:A (2.7) BS39 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585986 6yez:A (2.7) BS40 PQN 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585987 6yez:A (2.7) BS41 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585988 6yez:A (2.7) BS42 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585989 6yez:A (2.7) BS43 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585990 6yez:A (2.7) BS44 SF4 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585991 6yez:A (2.7) BS45 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585992 6yez:A (2.7) BS46 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585993 6yez:A (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585994 6yez:A (2.7) BS48 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585995 6yez:A (2.7) BS49 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    585996 6yez:B (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    585997 6yez:B (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    585998 6yez:B (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    585999 6yez:B (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    586000 6yez:B (2.7) BS05 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).