SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    586801 6ylh:b (3.1) BS02 rna ? GO:0000054 ... Q02892 32668200
    586802 6ylh:b (3.1) BS03 GTP ? GO:0000054 ... Q02892 32668200
    586803 6ylh:c (3.1) BS01 rna ? GO:0003674 ... P47019 32668200
    586804 6ylh:c (3.1) BS02 rna ? GO:0003674 ... P47019 32668200
    586805 6ylh:d (3.1) BS01 rna ? GO:0002181 ... P0C2H8 32668200
    586806 6ylh:e (3.1) BS01 rna ? GO:0002181 ... P38061 32668200
    586807 6ylh:f (3.1) BS01 rna ? GO:0000027 ... P05744 32668200
    586808 6ylh:g (3.1) BS01 rna ? GO:0002181 ... P87262 32668200
    586809 6ylh:h (3.1) BS01 rna ? GO:0000463 ... P0CX84 32668200
    586810 6ylh:h (3.1) BS02 rna ? GO:0000463 ... P0CX84 32668200
    586811 6ylh:i (3.1) BS01 rna ? GO:0002181 ... P05745 32668200
    586812 6ylh:j (3.1) BS01 rna ? GO:0000448 ... P49166 32668200
    586813 6ylh:j (3.1) BS02 rna ? GO:0000448 ... P49166 32668200
    586814 6ylh:j (3.1) BS03 ZN ? GO:0000448 ... P49166 32668200
    586815 6ylh:k (3.1) BS01 rna ? GO:0002181 ... P49167 32668200
    586816 6ylh:l (3.1) BS01 rna ? GO:0002181 ... P04650 32668200
    586817 6ylh:l (3.1) BS02 rna ? GO:0002181 ... P04650 32668200
    586818 6ylh:m (3.1) BS01 rna ? GO:0000055 ... P53742 32668200
    586819 6ylh:m (3.1) BS02 GTP ? GO:0000055 ... P53742 32668200
    586820 6ylh:n (3.1) BS01 rna ? GO:0002181 ... P14120 32668200
    586821 6ylh:o (3.1) BS01 rna ? GO:0000055 ... P0CX43 32668200
    586822 6ylh:p (3.1) BS01 rna ? GO:0002181 ... P0CX25 32668200
    586823 6ylh:p (3.1) BS02 ZN ? GO:0002181 ... P0CX25 32668200
    586824 6ylh:q (3.1) BS01 rna ? GO:0000027 ... P0CX53 32668200
    586825 6ylh:r (3.1) BS01 rna ? GO:0000460 ... P40078 32668200
    586826 6ylh:s (3.1) BS01 rna ? GO:0000055 ... P40010 32668200
    586827 6ylh:t (3.1) BS01 rna ? GO:0000055 ... P53313 32668200
    586828 6ylh:u (3.1) BS01 rna ? GO:0001671 ... Q07915 32668200
    586829 6ylh:u (3.1) BS02 ZN ? GO:0001671 ... Q07915 32668200
    586830 6ylh:x (3.1) BS01 rna ? GO:0000027 ... P25382 32668200
    586831 6ylh:y (3.1) BS01 rna ? GO:0000054 ... Q12522 32668200
    586832 6ylh:z (3.1) BS01 rna ? GO:0003674 ... P38202 32668200
    586833 6yli:A (1.9) BS01 peptide ? GO:0042981 ... Q07817 32998881
    586834 6yli:C (1.9) BS01 peptide ? GO:0042981 ... Q07817 32998881
    586835 6ylj:A (1.75) BS01 ZN 3.2.1.14 GO:0005975 ... P48827 N/A
    586836 6ylk:A (1.65) BS01 OY2 2.7.11.22 GO:0000082 ... P24941 32659037
    586837 6yll:A (2.89) BS01 OYB 2.7.11.24 GO:0004672 ... Q16659 32927028
    586838 6ylr:A (2.19545) BS01 OYE ? GO:0003723 ... P63073 34834356
    586839 6ylr:B (2.19545) BS01 OYE ? GO:0003723 ... P63073 34834356
    586840 6ylt:A (2.67) BS01 P3E ? GO:0003723 ... P63073 34834356
    586841 6ylt:B (2.67) BS01 P3E ? GO:0003723 ... P63073 34834356
    586842 6ylt:C (2.67) BS01 P3E ? GO:0003723 ... P63073 34834356
    586843 6ylt:D (2.67) BS01 P3E ? GO:0003723 ... P63073 34834356
    586844 6ylu:A (1.88) BS01 peptide ? GO:0000122 ... P31947 N/A
    586845 6ylv:A (2.66006) BS01 OYW ? GO:0003723 ... P63073 34834356
    586846 6ylv:B (2.66006) BS01 OYW ? GO:0003723 ... P63073 34834356
    586847 6ylv:C (2.66006) BS01 OYW ? GO:0003723 ... P63073 34834356
    586848 6ylv:D (2.66006) BS01 OYW ? GO:0003723 ... P63073 34834356
    586849 6ylx:B (3.9) BS01 rna ? GO:0000027 ... P14126 32668200
    586850 6ylx:C (3.9) BS01 rna ? GO:0002181 ... P10664 32668200
    586851 6ylx:C (3.9) BS02 rna ? GO:0002181 ... P10664 32668200
    586852 6ylx:E (3.9) BS01 rna ? GO:0000027 ... Q02326 32668200
    586853 6ylx:F (3.9) BS01 rna ? GO:0000463 ... P05737 32668200
    586854 6ylx:G (3.9) BS01 rna ? GO:0000470 ... P17076 32668200
    586855 6ylx:G (3.9) BS02 rna ? GO:0000470 ... P17076 32668200
    586856 6ylx:G (3.9) BS03 rna ? GO:0000470 ... P17076 32668200
    586857 6ylx:H (3.9) BS01 rna ? GO:0002181 ... P05738 32668200
    586858 6ylx:K (3.9) BS01 rna ? GO:0000463 ... P38779 32668200
    586859 6ylx:L (3.9) BS01 rna ? GO:0002181 ... Q12690 32668200
    586860 6ylx:M (3.9) BS01 rna ? GO:0000027 ... P36105 32668200
    586861 6ylx:N (3.9) BS01 rna ? GO:0002181 ... P05748 32668200
    586862 6ylx:N (3.9) BS02 rna ? GO:0002181 ... P05748 32668200
    586863 6ylx:O (3.9) BS01 rna ? GO:0000470 ... P26784 32668200
    586864 6ylx:P (3.9) BS01 rna ? GO:0000448 ... P05740 32668200
    586865 6ylx:P (3.9) BS02 rna ? GO:0000448 ... P05740 32668200
    586866 6ylx:Q (3.9) BS01 rna ? GO:0002181 ... P0CX49 32668200
    586867 6ylx:R (3.9) BS01 rna ? GO:0002181 ... P0CX82 32668200
    586868 6ylx:S (3.9) BS01 rna ? GO:0002181 ... P0CX23 32668200
    586869 6ylx:T (3.9) BS01 rna ? GO:0002181 ... Q02753 32668200
    586870 6ylx:U (3.9) BS01 rna ? GO:0002181 ... P05749 32668200
    586871 6ylx:V (3.9) BS01 rna ? GO:0002181 ... P0CX41 32668200
    586872 6ylx:W (3.9) BS01 rna ? GO:0000027 ... P33201 32668200
    586873 6ylx:X (3.9) BS01 rna ? GO:0000027 ... P04456 32668200
    586874 6ylx:X (3.9) BS02 rna ? GO:0000027 ... P04456 32668200
    586875 6ylx:Y (3.9) BS01 rna ? GO:0002181 ... P05743 32668200
    586876 6ylx:Y (3.9) BS02 rna ? GO:0002181 ... P05743 32668200
    586877 6ylx:Z (3.9) BS01 rna ? GO:0002181 ... P0C2H6 32668200
    586878 6ylx:a (3.9) BS01 rna ? GO:0002181 ... P02406 32668200
    586879 6ylx:b (3.9) BS01 rna ? GO:0000054 ... Q02892 32668200
    586880 6ylx:c (3.9) BS01 rna ? GO:0002181 ... P14120 32668200
    586881 6ylx:d (3.9) BS01 rna ? GO:0002181 ... P0C2H8 32668200
    586882 6ylx:e (3.9) BS01 rna ? GO:0002181 ... P38061 32668200
    586883 6ylx:f (3.9) BS01 rna ? GO:0000027 ... P05744 32668200
    586884 6ylx:g (3.9) BS01 rna ? GO:0002181 ... P87262 32668200
    586885 6ylx:h (3.9) BS01 rna ? GO:0000463 ... P0CX84 32668200
    586886 6ylx:h (3.9) BS02 rna ? GO:0000463 ... P0CX84 32668200
    586887 6ylx:i (3.9) BS01 rna ? GO:0002181 ... P05745 32668200
    586888 6ylx:j (3.9) BS01 rna ? GO:0000448 ... P49166 32668200
    586889 6ylx:j (3.9) BS02 rna ? GO:0000448 ... P49166 32668200
    586890 6ylx:k (3.9) BS01 rna ? GO:0002181 ... P49167 32668200
    586891 6ylx:l (3.9) BS01 rna ? GO:0002181 ... P04650 32668200
    586892 6ylx:l (3.9) BS02 rna ? GO:0002181 ... P04650 32668200
    586893 6ylx:n (3.9) BS01 rna ? GO:0000462 ... P53261 32668200
    586894 6ylx:n (3.9) BS02 rna ? GO:0000462 ... P53261 32668200
    586895 6ylx:o (3.9) BS01 rna ? GO:0000463 ... P53927 32668200
    586896 6ylx:r (3.9) BS01 rna ? GO:0000460 ... P40078 32668200
    586897 6ylx:s (3.9) BS01 rna ? GO:0000055 ... P40010 32668200
    586898 6ylx:t (3.9) BS01 rna ? GO:0000463 ... P40693 32668200
    586899 6ylx:t (3.9) BS02 rna ? GO:0000463 ... P40693 32668200
    586900 6ylx:t (3.9) BS03 rna ? GO:0000463 ... P40693 32668200
    586901 6ylx:u (3.9) BS01 rna ? GO:0001671 ... Q07915 32668200
    586902 6ylx:w (3.9) BS01 rna 2.1.1.167 GO:0000451 ... P25582 32668200
    586903 6ylx:y (3.9) BS01 rna ? GO:0000054 ... Q12522 32668200
    586904 6ylx:z (3.9) BS01 rna ? GO:0003674 ... P38202 32668200
    586905 6yly:A (3.8) BS01 rna ? GO:0002181 ... P0CX45 32668200
    586906 6yly:B (3.8) BS01 rna ? GO:0000027 ... P14126 32668200
    586907 6yly:C (3.8) BS01 rna ? GO:0002181 ... P10664 32668200
    586908 6yly:C (3.8) BS02 rna ? GO:0002181 ... P10664 32668200
    586909 6yly:E (3.8) BS01 rna ? GO:0000027 ... Q02326 32668200
    586910 6yly:F (3.8) BS01 rna ? GO:0000463 ... P05737 32668200
    586911 6yly:G (3.8) BS01 rna ? GO:0000470 ... P17076 32668200
    586912 6yly:G (3.8) BS02 rna ? GO:0000470 ... P17076 32668200
    586913 6yly:G (3.8) BS03 rna ? GO:0000470 ... P17076 32668200
    586914 6yly:H (3.8) BS01 rna ? GO:0002181 ... P05738 32668200
    586915 6yly:I (3.8) BS01 rna ? GO:0000055 ... Q08004 32668200
    586916 6yly:K (3.8) BS01 rna ? GO:0000463 ... P38779 32668200
    586917 6yly:L (3.8) BS01 rna ? GO:0002181 ... Q12690 32668200
    586918 6yly:M (3.8) BS01 rna ? GO:0000027 ... P36105 32668200
    586919 6yly:N (3.8) BS01 rna ? GO:0002181 ... P05748 32668200
    586920 6yly:N (3.8) BS02 rna ? GO:0002181 ... P05748 32668200
    586921 6yly:O (3.8) BS01 rna ? GO:0000470 ... P26784 32668200
    586922 6yly:P (3.8) BS01 rna ? GO:0000448 ... P05740 32668200
    586923 6yly:P (3.8) BS02 rna ? GO:0000448 ... P05740 32668200
    586924 6yly:Q (3.8) BS01 rna ? GO:0002181 ... P0CX49 32668200
    586925 6yly:R (3.8) BS01 rna ? GO:0002181 ... P0CX82 32668200
    586926 6yly:S (3.8) BS01 rna ? GO:0002181 ... P0CX23 32668200
    586927 6yly:T (3.8) BS01 rna ? GO:0002181 ... Q02753 32668200
    586928 6yly:U (3.8) BS01 rna ? GO:0002181 ... P05749 32668200
    586929 6yly:V (3.8) BS01 rna ? GO:0002181 ... P0CX41 32668200
    586930 6yly:W (3.8) BS01 rna ? GO:0000027 ... P33201 32668200
    586931 6yly:X (3.8) BS01 rna ? GO:0000027 ... P04456 32668200
    586932 6yly:X (3.8) BS02 rna ? GO:0000027 ... P04456 32668200
    586933 6yly:Y (3.8) BS01 rna ? GO:0002181 ... P05743 32668200
    586934 6yly:Y (3.8) BS02 rna ? GO:0002181 ... P05743 32668200
    586935 6yly:Z (3.8) BS01 rna ? GO:0002181 ... P0C2H6 32668200
    586936 6yly:a (3.8) BS01 rna ? GO:0002181 ... P02406 32668200
    586937 6yly:b (3.8) BS01 rna ? GO:0000054 ... Q02892 32668200
    586938 6yly:c (3.8) BS01 rna ? GO:0002181 ... P14120 32668200
    586939 6yly:d (3.8) BS01 rna ? GO:0002181 ... P0C2H8 32668200
    586940 6yly:e (3.8) BS01 rna ? GO:0002181 ... P38061 32668200
    586941 6yly:f (3.8) BS01 rna ? GO:0000027 ... P05744 32668200
    586942 6yly:g (3.8) BS01 rna ? GO:0002181 ... P87262 32668200
    586943 6yly:h (3.8) BS01 rna ? GO:0000463 ... P0CX84 32668200
    586944 6yly:h (3.8) BS02 rna ? GO:0000463 ... P0CX84 32668200
    586945 6yly:i (3.8) BS01 rna ? GO:0002181 ... P05745 32668200
    586946 6yly:j (3.8) BS01 rna ? GO:0000448 ... P49166 32668200
    586947 6yly:j (3.8) BS02 rna ? GO:0000448 ... P49166 32668200
    586948 6yly:j (3.8) BS03 ZN ? GO:0000448 ... P49166 32668200
    586949 6yly:k (3.8) BS01 rna ? GO:0002181 ... P49167 32668200
    586950 6yly:l (3.8) BS01 rna ? GO:0002181 ... P04650 32668200
    586951 6yly:l (3.8) BS02 rna ? GO:0002181 ... P04650 32668200
    586952 6yly:n (3.8) BS01 rna ? GO:0000462 ... P53261 32668200
    586953 6yly:n (3.8) BS02 rna ? GO:0000462 ... P53261 32668200
    586954 6yly:o (3.8) BS01 rna ? GO:0000463 ... P53927 32668200
    586955 6yly:p (3.8) BS01 rna ? GO:0002181 ... P0CX25 32668200
    586956 6yly:p (3.8) BS02 ZN ? GO:0002181 ... P0CX25 32668200
    586957 6yly:q (3.8) BS01 rna ? GO:0000027 ... Q12080 32668200
    586958 6yly:q (3.8) BS02 rna ? GO:0000027 ... Q12080 32668200
    586959 6yly:r (3.8) BS01 rna ? GO:0000460 ... P40078 32668200
    586960 6yly:s (3.8) BS01 rna ? GO:0000055 ... P40010 32668200
    586961 6yly:t (3.8) BS01 rna ? GO:0000463 ... P40693 32668200
    586962 6yly:t (3.8) BS02 rna ? GO:0000463 ... P40693 32668200
    586963 6yly:t (3.8) BS03 rna ? GO:0000463 ... P40693 32668200
    586964 6yly:u (3.8) BS01 rna ? GO:0001671 ... Q07915 32668200
    586965 6yly:u (3.8) BS02 ZN ? GO:0001671 ... Q07915 32668200
    586966 6yly:y (3.8) BS01 rna ? GO:0000054 ... Q12522 32668200
    586967 6yly:z (3.8) BS01 rna ? GO:0003674 ... P38202 32668200
    586968 6ylz:AAA (1.558) BS01 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    586969 6ylz:AAA (1.558) BS02 PO4 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    586970 6ym1:A (1.7) BS01 GDP ? GO:0003924 ... P9WN95 34023403
    586971 6ym2:A (1.7) BS01 OYK ? GO:0003723 ... Q96MU7 N/A
    586972 6ym2:B (1.7) BS01 OYK ? GO:0003723 ... Q96MU7 N/A
    586973 6ym3:A (2.05) BS01 OYZ 2.7.1.149 GO:0001750 ... P48426 34699202
    586974 6ym3:B (2.05) BS01 OYZ 2.7.1.149 GO:0001750 ... P48426 34699202
    586975 6ym3:B (2.05) BS02 PO4 2.7.1.149 GO:0001750 ... P48426 34699202
    586976 6ym4:A (1.95) BS01 P4Z 2.7.1.149 GO:0001750 ... P48426 34699202
    586977 6ym4:B (1.95) BS01 P4Z 2.7.1.149 GO:0001750 ... P48426 34699202
    586978 6ym5:A (2.5) BS01 OZ5 2.7.1.149 GO:0001750 ... P48426 34699202
    586979 6ym5:B (2.5) BS01 OZ5 2.7.1.149 GO:0001750 ... P48426 34699202
    586980 6ym8:A (1.5) BS01 OYN ? GO:0003723 ... Q96MU7 N/A
    586981 6ym8:B (1.5) BS01 OYN ? GO:0003723 ... Q96MU7 N/A
    586982 6ym9:A (2.03) BS01 GSP ? GO:0003924 ... P9WN95 34023403
    586983 6yma:A (2.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32737395
    586984 6yma:A (2.5) BS02 AZM 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32737395 BindingDB: Ki=12nM, Kd=17nM, IC50=6.7nM
    586985 6ymb:A (2.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32737395
    586986 6ymd:A (1.25) BS01 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586987 6ymd:A (1.25) BS02 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586988 6ymd:A (1.25) BS03 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586989 6ymd:A (1.25) BS04 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586990 6ymd:B (1.25) BS01 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586991 6ymd:B (1.25) BS02 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586992 6ymd:B (1.25) BS03 MLI 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586993 6ymd:B (1.25) BS04 PMP 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586994 6ymf:A (1.63) BS01 PLS 2.1.2.1 GO:0004372 ... I7H6W6 32417544
    586995 6ymg:A (3.14) BS01 dna N/A N/A N/A 33450012
    586996 6ymg:A (3.14) BS02 dna N/A N/A N/A 33450012
    586997 6ymg:B (3.14) BS01 dna N/A N/A N/A 33450012
    586998 6ymg:B (3.14) BS02 dna N/A N/A N/A 33450012
    586999 6ymh:AAA (2.417) BS01 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    587000 6ymh:AAA (2.417) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).