SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587001 6ymh:BBB (2.417) BS01 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    587002 6ymh:BBB (2.417) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    587003 6ymh:BBB (2.417) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    587004 6ymo:A (2.02) BS01 peptide ? GO:0000122 ... P63104 33744286
    587005 6ymo:B (2.02) BS01 peptide ? GO:0000122 ... P63104 33744286
    587006 6ymp:H (1.42) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587007 6ymp:H (1.42) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587008 6ymp:H (1.42) BS03 D6Y 3.4.21.5 GO:0004252 ... P00734 N/A
    587009 6ymr:E (1.6) BS01 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    587010 6ymr:E (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587011 6ymr:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587012 6ymr:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587013 6ymr:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587014 6ymr:E (1.6) BS06 OZE 3.4.24.27 GO:0004222 ... P43133 N/A
    587015 6yms:E (1.32) BS01 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587016 6yms:E (1.32) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587017 6yms:E (1.32) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587018 6yms:E (1.32) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    587019 6yms:E (1.32) BS05 ZN 3.4.24.27 GO:0004222 ... P43133 N/A
    587020 6yms:E (1.32) BS06 OZH 3.4.24.27 GO:0004222 ... P43133 N/A
    587021 6ymv:A (3.1) BS01 dna 2.7.7.6 GO:0000002 ... P13433 33278362
    587022 6ymv:A (3.1) BS02 dna 2.7.7.6 GO:0000002 ... P13433 33278362
    587023 6ymv:B (3.1) BS01 dna 2.1.1.- GO:0003677 ... P14908 33278362
    587024 6ymv:B (3.1) BS02 dna 2.1.1.- GO:0003677 ... P14908 33278362
    587025 6ymw:A (3.71) BS01 dna 2.7.7.6 GO:0000002 ... P13433 33278362
    587026 6ymw:A (3.71) BS02 dna 2.7.7.6 GO:0000002 ... P13433 33278362
    587027 6ymw:A (3.71) BS03 rna 2.7.7.6 GO:0000002 ... P13433 33278362
    587028 6ymw:A (3.71) BS04 P5E 2.7.7.6 GO:0000002 ... P13433 33278362
    587029 6ymw:A (3.71) BS05 MG 2.7.7.6 GO:0000002 ... P13433 33278362
    587030 6ymw:B (3.71) BS01 dna 2.1.1.- GO:0003677 ... P14908 33278362
    587031 6ymw:B (3.71) BS02 dna 2.1.1.- GO:0003677 ... P14908 33278362
    587032 6ymx:C (3.17) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    587033 6ymx:C (3.17) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    587034 6ymx:C (3.17) BS03 CN5 7.1.1.8 GO:0005739 ... P00163 33016568
    587035 6ymx:C (3.17) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 33016568
    587036 6ymx:D (3.17) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 33016568
    587037 6ymx:E (3.17) BS01 FES 7.1.1.8 GO:0008121 ... P08067 33016568
    587038 6ymx:N (3.17) BS01 CN5 7.1.1.8 GO:0005739 ... P00163 33016568
    587039 6ymx:N (3.17) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    587040 6ymx:N (3.17) BS03 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    587041 6ymx:N (3.17) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 33016568
    587042 6ymx:O (3.17) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 33016568
    587043 6ymx:P (3.17) BS01 FES 7.1.1.8 GO:0008121 ... P08067 33016568
    587044 6ymx:a (3.17) BS01 CU 7.1.1.9 GO:0004129 ... P00401 33016568
    587045 6ymx:a (3.17) BS02 HEA 7.1.1.9 GO:0004129 ... P00401 33016568
    587046 6ymx:a (3.17) BS03 HEA 7.1.1.9 GO:0004129 ... P00401 33016568
    587047 6ymx:b (3.17) BS01 CUA 7.1.1.9 GO:0004129 ... P00410 33016568
    587048 6ymx:d (3.17) BS01 ZN ? GO:0005740 ... P04037 33016568
    587049 6ymy:a (3.41) BS01 CU 7.1.1.9 GO:0004129 ... P00401 33016568
    587050 6ymy:a (3.41) BS02 HEA 7.1.1.9 GO:0004129 ... P00401 33016568
    587051 6ymy:a (3.41) BS03 HEA 7.1.1.9 GO:0004129 ... P00401 33016568
    587052 6ymy:b (3.41) BS01 HEA 7.1.1.9 GO:0004129 ... P00410 33016568
    587053 6ymy:b (3.41) BS02 CUA 7.1.1.9 GO:0004129 ... P00410 33016568
    587054 6ymy:d (3.41) BS01 ZN ? GO:0005740 ... P04037 33016568
    587055 6yn0:A (2.4) BS01 peptide 2.4.99.28
    3.4.16.4
    GO:0008233 ... P02919 33109614
    587056 6yn0:A (2.4) BS02 M0E 2.4.99.28
    3.4.16.4
    GO:0008233 ... P02919 33109614
    587057 6yn1:B (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587058 6yn1:C (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587059 6yn1:G (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587060 6yn1:H (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587061 6yn1:L (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587062 6yn1:M (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587063 6yn1:Q (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587064 6yn1:R (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587065 6yn1:V (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587066 6yn1:W (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587067 6yn1:a (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587068 6yn1:b (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587069 6yn1:f (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587070 6yn1:g (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587071 6yn1:k (2.35) BS01 peptide ? GO:0000786 ... P02281 35895815
    587072 6yn1:l (2.35) BS01 peptide ? GO:0000786 ... P02302 35895815
    587073 6yn2:A (1.9) BS01 CEI 1.13.12.5 GO:0003824 ... P27652 34127663
    587074 6yn2:B (1.9) BS01 CEI 1.13.12.5 GO:0003824 ... P27652 34127663
    587075 6yn3:H (1.49) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587076 6yn3:H (1.49) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587077 6yn3:H (1.49) BS03 HBD 3.4.21.5 GO:0004252 ... P00734 N/A
    587078 6yn4:A (1.82) BS01 ZN 3.2.1.14 GO:0005975 ... P48827 N/A
    587079 6yn8:A (3.052) BS01 OZK 3.4.22.- GO:0004197 ... Q9UDY8 N/A
    587080 6yn9:A (2.558) BS01 OZQ 3.4.22.- GO:0004197 ... Q9UDY8 N/A
    587081 6yna:A (1.47) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587082 6yna:A (1.47) BS02 M77 2.7.11.11 GO:0000287 ... P25321 33029876
    587083 6ynb:A (1.72) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587084 6ynb:A (1.72) BS02 IQU 2.7.11.11 GO:0000287 ... P25321 33029876
    587085 6ync:A (1.4) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587086 6ync:A (1.4) BS02 7CT 2.7.11.11 GO:0000287 ... P25321 33029876
    587087 6yni:B (1.36) BS01 P0Q ? GO:0003723 ... Q96MU7 N/A
    587088 6ynj:A (1.5) BS01 P0N ? GO:0003723 ... Q96MU7 N/A
    587089 6ynj:A (1.5) BS02 P0N ? GO:0003723 ... Q96MU7 N/A
    587090 6ynj:B (1.5) BS01 P0N ? GO:0003723 ... Q96MU7 N/A
    587091 6ynk:A (1.3) BS01 P0K ? GO:0003723 ... Q96MU7 N/A
    587092 6ynk:B (1.3) BS01 P0K ? GO:0003723 ... Q96MU7 N/A
    587093 6ynl:B (1.5) BS01 P0Z ? GO:0003723 ... Q96MU7 N/A
    587094 6ynm:B (1.5) BS01 P1Q ? GO:0003723 ... Q96MU7 N/A
    587095 6ynn:A (1.2) BS01 P0B ? GO:0003723 ... Q96MU7 33472367
    587096 6ynn:B (1.2) BS01 P0B ? GO:0003723 ... Q96MU7 33472367
    587097 6yno:B (1.4) BS01 P0W ? GO:0003723 ... Q96MU7 33472367
    587098 6ynp:A (1.1) BS01 PJH ? GO:0003723 ... Q96MU7 N/A
    587099 6ynp:B (1.1) BS01 PJH ? GO:0003723 ... Q96MU7 N/A
    587100 6ynq:A (1.8) BS01 P6N 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162
    587101 6ynr:A (1.9) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587102 6ynr:A (1.9) BS02 O72 2.7.11.11 GO:0000287 ... P25321 33029876
    587103 6yns:A (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587104 6yns:A (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587105 6yns:A (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587106 6yns:A (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587107 6yns:A (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587108 6yns:A (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    587109 6yns:A (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    587110 6yns:B (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587111 6yns:B (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587112 6yns:B (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587113 6yns:B (3.94) BS04 peptide ? GO:0000086 ... P0DP23 33977052
    587114 6yns:B (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587115 6yns:B (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    587116 6yns:B (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    587117 6yns:B (3.94) BS08 CA ? GO:0000086 ... P0DP23 33977052
    587118 6yns:C (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587119 6yns:C (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587120 6yns:C (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587121 6yns:C (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587122 6yns:C (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587123 6yns:D (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587124 6yns:D (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587125 6yns:D (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587126 6yns:D (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587127 6yns:D (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587128 6yns:E (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587129 6yns:E (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587130 6yns:E (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587131 6yns:E (3.94) BS04 peptide ? GO:0000086 ... P0DP23 33977052
    587132 6yns:E (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587133 6yns:E (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    587134 6yns:F (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587135 6yns:F (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587136 6yns:F (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587137 6yns:F (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587138 6yns:F (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587139 6yns:G (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587140 6yns:G (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587141 6yns:G (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587142 6yns:G (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587143 6yns:G (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587144 6yns:H (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587145 6yns:H (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587146 6yns:H (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587147 6yns:H (3.94) BS04 peptide ? GO:0000086 ... P0DP23 33977052
    587148 6yns:H (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587149 6yns:H (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    587150 6yns:I (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587151 6yns:I (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587152 6yns:I (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587153 6yns:I (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587154 6yns:I (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587155 6yns:J (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587156 6yns:J (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587157 6yns:J (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587158 6yns:J (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587159 6yns:J (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587160 6yns:K (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587161 6yns:K (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587162 6yns:K (3.94) BS03 peptide ? GO:0000086 ... P0DP23 33977052
    587163 6yns:K (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587164 6yns:K (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587165 6yns:K (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    587166 6yns:L (3.94) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587167 6yns:L (3.94) BS02 peptide ? GO:0000086 ... P0DP23 33977052
    587168 6yns:L (3.94) BS03 CA ? GO:0000086 ... P0DP23 33977052
    587169 6ynt:A (1.52) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587170 6ynt:A (1.52) BS02 LRT 2.7.11.11 GO:0000287 ... P25321 33029876
    587171 6ynu:A (3.12) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587172 6ynu:A (3.12) BS02 CA ? GO:0000086 ... P0DP23 33977052
    587173 6ynu:A (3.12) BS03 CA ? GO:0000086 ... P0DP23 33977052
    587174 6ynu:A (3.12) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587175 6ynu:A (3.12) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587176 6ynu:A (3.12) BS06 CA ? GO:0000086 ... P0DP23 33977052
    587177 6ynu:C (3.12) BS01 peptide ? GO:0000086 ... P0DP23 33977052
    587178 6ynu:C (3.12) BS02 CA ? GO:0000086 ... P0DP23 33977052
    587179 6ynu:C (3.12) BS03 CA ? GO:0000086 ... P0DP23 33977052
    587180 6ynu:C (3.12) BS04 CA ? GO:0000086 ... P0DP23 33977052
    587181 6ynu:C (3.12) BS05 CA ? GO:0000086 ... P0DP23 33977052
    587182 6ynv:e (2.8) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587183 6ynx:A (2.5) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587184 6ynx:E (2.5) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587185 6ynx:G (2.5) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587186 6ynx:G (2.5) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587187 6ynx:H (2.5) BS01 ATP ? N/A I7MCZ0 33093501
    587188 6ynx:I (2.5) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587189 6ynx:K (2.5) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587190 6ynx:L (2.5) BS01 UQ8 ? N/A I7MCQ6 33093501
    587191 6ynx:M (2.5) BS01 UQ8 ? N/A I7M980 33093501
    587192 6ynx:a (2.5) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587193 6ynx:e (2.5) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587194 6ynx:g (2.5) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587195 6ynx:g (2.5) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587196 6ynx:h (2.5) BS01 ATP ? N/A I7MCZ0 33093501
    587197 6ynx:i (2.5) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587198 6ynx:i2 (2.5) BS01 peptide ? N/A I7M7C0 33093501
    587199 6ynx:k (2.5) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587200 6ynx:m (2.5) BS01 UQ8 ? N/A I7M980 33093501

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).