SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587201 6ynx:t (2.5) BS01 peptide ? GO:0016787 ... I7M7B9 33093501
    587202 6yny:A (2.7) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587203 6yny:A1 (2.7) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    587204 6yny:A1 (2.7) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    587205 6yny:A2 (2.7) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    587206 6yny:A2 (2.7) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    587207 6yny:B1 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587208 6yny:B2 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587209 6yny:C1 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587210 6yny:C2 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587211 6yny:D1 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587212 6yny:D1 (2.7) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587213 6yny:D2 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587214 6yny:D2 (2.7) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587215 6yny:E (2.7) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587216 6yny:E1 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587217 6yny:E2 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587218 6yny:G (2.7) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587219 6yny:G (2.7) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587220 6yny:H (2.7) BS01 ATP ? N/A I7MCZ0 33093501
    587221 6yny:I (2.7) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587222 6yny:K (2.7) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587223 6yny:a (2.7) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587224 6yny:e (2.7) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587225 6yny:g (2.7) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587226 6yny:g (2.7) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587227 6yny:h (2.7) BS01 ATP ? N/A I7MCZ0 33093501
    587228 6yny:i (2.7) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587229 6yny:k (2.7) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587230 6yny:l (2.7) BS01 UQ8 ? N/A I7MCQ6 33093501
    587231 6yny:m (2.7) BS01 UQ8 ? N/A I7M980 33093501
    587232 6ynz:A (3.1) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587233 6ynz:A1 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    587234 6ynz:A1 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    587235 6ynz:A2 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    587236 6ynz:A2 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    587237 6ynz:A3 (3.1) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587238 6ynz:A4 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    587239 6ynz:A4 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    587240 6ynz:A5 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    587241 6ynz:A5 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    587242 6ynz:B1 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587243 6ynz:B2 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587244 6ynz:B4 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587245 6ynz:B5 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587246 6ynz:C1 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587247 6ynz:C2 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587248 6ynz:C4 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587249 6ynz:C5 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587250 6ynz:D1 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587251 6ynz:D1 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587252 6ynz:D2 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587253 6ynz:D2 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587254 6ynz:D4 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587255 6ynz:D4 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587256 6ynz:D5 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587257 6ynz:D5 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587258 6ynz:E (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587259 6ynz:E1 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587260 6ynz:E1 (3.1) BS02 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587261 6ynz:E2 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587262 6ynz:E2 (3.1) BS02 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587263 6ynz:E3 (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587264 6ynz:E4 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587265 6ynz:E4 (3.1) BS02 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587266 6ynz:E5 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587267 6ynz:E5 (3.1) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587268 6ynz:F1 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587269 6ynz:F2 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587270 6ynz:F4 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587271 6ynz:F5 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587272 6ynz:G (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587273 6ynz:G (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587274 6ynz:G3 (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587275 6ynz:G3 (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587276 6ynz:H (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    587277 6ynz:H3 (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    587278 6ynz:I (3.1) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587279 6ynz:I3 (3.1) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587280 6ynz:K (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587281 6ynz:K3 (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587282 6ynz:L3 (3.1) BS01 UQ8 ? N/A I7MCQ6 33093501
    587283 6ynz:M (3.1) BS01 UQ8 ? N/A I7M980 33093501
    587284 6ynz:a (3.1) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587285 6ynz:a3 (3.1) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    587286 6ynz:e (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587287 6ynz:e3 (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    587288 6ynz:g (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587289 6ynz:g (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587290 6ynz:g3 (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    587291 6ynz:g3 (3.1) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    587292 6ynz:h (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    587293 6ynz:h3 (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    587294 6ynz:i (3.1) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587295 6ynz:i3 (3.1) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    587296 6ynz:k (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587297 6ynz:k3 (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    587298 6ynz:l (3.1) BS01 UQ8 ? N/A I7MCQ6 33093501
    587299 6ynz:l3 (3.1) BS01 UQ8 ? N/A I7MCQ6 33093501
    587300 6ynz:m (3.1) BS01 UQ8 ? N/A I7M980 33093501
    587301 6ynz:m3 (3.1) BS01 UQ8 ? N/A I7M980 33093501
    587302 6yo0:A1 (2.9) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587303 6yo0:B1 (2.9) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587304 6yo0:C1 (2.9) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    587305 6yo0:D1 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587306 6yo0:D1 (2.9) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587307 6yo0:E1 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    587308 6yo1:A (1.9) BS01 UVC 4.6.1.18 GO:0003676 ... P61823 33209320
    587309 6yo1:B (1.9) BS01 UVC 4.6.1.18 GO:0003676 ... P61823 33209320
    587310 6yo2:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587311 6yo2:A (1.2) BS02 P6Q 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587312 6yo3:A (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587313 6yo3:A (1.84) BS02 P3K ? GO:0005737 ... Q05097 33314528 MOAD: Kd=1.11mM
    587314 6yo3:B (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587315 6yo3:C (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587316 6yo3:C (1.84) BS02 P3K ? GO:0005737 ... Q05097 33314528 MOAD: Kd=1.11mM
    587317 6yo3:D (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587318 6yo4:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587319 6yo4:A (1.7) BS02 P8B 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587320 6yo5:AAA (1.5) BS01 CU ? GO:0005507 ... B5HSR1 39541228
    587321 6yo5:AAA (1.5) BS02 CU ? GO:0005507 ... B5HSR1 39541228
    587322 6yo5:AAA (1.5) BS03 CU ? GO:0005507 ... B5HSR1 39541228
    587323 6yo5:AAA (1.5) BS04 CU ? GO:0005507 ... B5HSR1 39541228
    587324 6yo5:BBB (1.5) BS01 CU ? GO:0005507 ... B5HSR1 39541228
    587325 6yo5:BBB (1.5) BS02 CU ? GO:0005507 ... B5HSR1 39541228
    587326 6yo5:BBB (1.5) BS03 CU ? GO:0005507 ... B5HSR1 39541228
    587327 6yo5:BBB (1.5) BS04 CU ? GO:0005507 ... B5HSR1 39541228
    587328 6yo5:CCC (1.5) BS01 CU ? GO:0005507 ... B5HSR1 39541228
    587329 6yo5:CCC (1.5) BS02 CU ? GO:0005507 ... B5HSR1 39541228
    587330 6yo5:CCC (1.5) BS03 CU ? GO:0005507 ... B5HSR1 39541228
    587331 6yo5:CCC (1.5) BS04 CU ? GO:0005507 ... B5HSR1 39541228
    587332 6yo5:CCC (1.5) BS05 CU ? GO:0005507 ... B5HSR1 39541228
    587333 6yo7:A (1.17) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587334 6yo7:A (1.17) BS02 P7Z 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587335 6yo8:A (2.09) BS01 peptide ? GO:0000122 ... P63104 33744286
    587336 6yo8:B (2.09) BS01 peptide ? GO:0000122 ... P63104 33744286
    587337 6yo8:C (2.09) BS01 peptide ? GO:0000122 ... P63104 33744286
    587338 6yo8:D (2.09) BS01 peptide ? GO:0000122 ... P63104 33744286
    587339 6yo9:A (2.4) BS01 P4B 3.5.4.44 GO:0005737 ... E1V7W1 32404365
    587340 6yo9:A (2.4) BS02 P4B 3.5.4.44 GO:0005737 ... E1V7W1 32404365
    587341 6yo9:B (2.4) BS01 P4B 3.5.4.44 GO:0005737 ... E1V7W1 32404365
    587342 6yo9:B (2.4) BS02 P4B 3.5.4.44 GO:0005737 ... E1V7W1 32404365
    587343 6yof:A (2.45) BS01 78M ? GO:0005886 ... Q5M4H8 33209324
    587344 6yof:A (2.45) BS02 78M ? GO:0005886 ... Q5M4H8 33209324
    587345 6yof:A (2.45) BS03 78M ? GO:0005886 ... Q5M4H8 33209324
    587346 6yof:A (2.45) BS04 78M ? GO:0005886 ... Q5M4H8 33209324
    587347 6yof:A (2.45) BS05 78M ? GO:0005886 ... Q5M4H8 33209324
    587348 6yof:A (2.45) BS06 78M ? GO:0005886 ... Q5M4H8 33209324
    587349 6yof:A (2.45) BS07 78M ? GO:0005886 ... Q5M4H8 33209324
    587350 6yof:A (2.45) BS08 78M ? GO:0005886 ... Q5M4H8 33209324
    587351 6yof:A (2.45) BS09 78M ? GO:0005886 ... Q5M4H8 33209324
    587352 6yof:A (2.45) BS10 78M ? GO:0005886 ... Q5M4H8 33209324
    587353 6yof:A (2.45) BS11 78M ? GO:0005886 ... Q5M4H8 33209324
    587354 6yof:A (2.45) BS12 78M ? GO:0005886 ... Q5M4H8 33209324
    587355 6yof:A (2.45) BS13 78M ? GO:0005886 ... Q5M4H8 33209324
    587356 6yof:A (2.45) BS14 78M ? GO:0005886 ... Q5M4H8 33209324
    587357 6yog:A (2.3) BS01 78M ? GO:0005886 ... Q5M4H8 33209324
    587358 6yog:A (2.3) BS02 78M ? GO:0005886 ... Q5M4H8 33209324
    587359 6yog:A (2.3) BS03 78M ? GO:0005886 ... Q5M4H8 33209324
    587360 6yog:A (2.3) BS04 78M ? GO:0005886 ... Q5M4H8 33209324
    587361 6yog:A (2.3) BS05 78M ? GO:0005886 ... Q5M4H8 33209324
    587362 6yog:A (2.3) BS06 78M ? GO:0005886 ... Q5M4H8 33209324
    587363 6yog:A (2.3) BS07 78M ? GO:0005886 ... Q5M4H8 33209324
    587364 6yog:A (2.3) BS08 78M ? GO:0005886 ... Q5M4H8 33209324
    587365 6yog:A (2.3) BS09 78M ? GO:0005886 ... Q5M4H8 33209324
    587366 6yog:A (2.3) BS10 78M ? GO:0005886 ... Q5M4H8 33209324
    587367 6yog:A (2.3) BS11 78M ? GO:0005886 ... Q5M4H8 33209324
    587368 6yog:A (2.3) BS12 78M ? GO:0005886 ... Q5M4H8 33209324
    587369 6yog:A (2.3) BS13 78M ? GO:0005886 ... Q5M4H8 33209324
    587370 6yog:A (2.3) BS14 78M ? GO:0005886 ... Q5M4H8 33209324
    587371 6yog:A (2.3) BS15 78M ? GO:0005886 ... Q5M4H8 33209324
    587372 6yog:A (2.3) BS16 78M ? GO:0005886 ... Q5M4H8 33209324
    587373 6yoh:A (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587374 6yoh:A (1.84) BS02 P4H ? GO:0005737 ... Q05097 33314528
    587375 6yoh:B (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587376 6yoh:B (1.84) BS02 P4H ? GO:0005737 ... Q05097 33314528
    587377 6yoh:C (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587378 6yoh:D (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    587379 6yoh:D (1.84) BS02 P4H ? GO:0005737 ... Q05097 33314528
    587380 6yoi:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587381 6yoi:A (1.2) BS02 P7H 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587382 6yoj:A (1.361) BS01 P4N 2.7.10.2 GO:0004672 ... Q05397 33497606 BindingDB: IC50=4.0nM
    587383 6yok:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587384 6yok:A (1.25) BS02 P82 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587385 6yol:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587386 6yol:A (1.15) BS02 P5T 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32757220
    587387 6yom:A (3.25) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    587388 6yom:A (3.25) BS02 MN 3.1.5.- N/A Q9Y3Z3 32576829
    587389 6yom:A (3.25) BS03 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    587390 6yom:A (3.25) BS04 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    587391 6yom:A (3.25) BS05 DTP 3.1.5.- N/A Q9Y3Z3 32576829
    587392 6yom:A (3.25) BS06 DTP 3.1.5.- N/A Q9Y3Z3 32576829
    587393 6yom:A (3.25) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    587394 6yom:B (3.25) BS01 CZF 3.1.5.- N/A Q9Y3Z3 32576829
    587395 6yom:B (3.25) BS02 DTP 3.1.5.- N/A Q9Y3Z3 32576829
    587396 6yom:B (3.25) BS03 DTP 3.1.5.- N/A Q9Y3Z3 32576829
    587397 6yom:B (3.25) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    587398 6yom:B (3.25) BS05 MN 3.1.5.- N/A Q9Y3Z3 32576829
    587399 6yom:B (3.25) BS06 0KX 3.1.5.- N/A Q9Y3Z3 32576829
    587400 6yom:B (3.25) BS07 CZF 3.1.5.- N/A Q9Y3Z3 32576829

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).