SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587401 6yoo:A (1.06) BS01 peptide ? GO:0000045 ... Q9H0R8 N/A
    587402 6yoo:A (1.06) BS02 ZN ? GO:0000045 ... Q9H0R8 N/A
    587403 6yoq:A (1.3) BS01 P5H ? GO:0003723 ... Q96MU7 N/A
    587404 6yoq:B (1.3) BS01 P5H ? GO:0003723 ... Q96MU7 N/A
    587405 6yos:A (2.75) BS01 peptide ? GO:0000122 ... P63104 33744286
    587406 6yos:B (2.75) BS01 peptide ? GO:0000122 ... P63104 33744286
    587407 6yot:A (1.96) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    587408 6yot:A (1.96) BS02 P4W 2.7.11.11 GO:0000287 ... P25321 N/A
    587409 6yot:A (1.96) BS03 P4W 2.7.11.11 GO:0000287 ... P25321 N/A
    587410 6you:A (1.73) BS01 P4Q 2.7.11.11 GO:0000287 ... P25321 N/A
    587411 6yov:A (3.42) BS01 dna ? GO:0000786 ... P68431 32327602
    587412 6yov:A (3.42) BS02 dna ? GO:0000786 ... P68431 32327602
    587413 6yov:B (3.42) BS01 dna ? GO:0000781 ... P62805 32327602
    587414 6yov:B (3.42) BS02 dna ? GO:0000781 ... P62805 32327602
    587415 6yov:C (3.42) BS01 dna ? GO:0000786 ... P04908 32327602
    587416 6yov:C (3.42) BS02 dna ? GO:0000786 ... P04908 32327602
    587417 6yov:D (3.42) BS01 dna ? GO:0000786 ... P06899 32327602
    587418 6yov:D (3.42) BS02 PTD ? GO:0000786 ... P06899 32327602
    587419 6yov:E (3.42) BS01 dna ? GO:0000786 ... P68431 32327602
    587420 6yov:E (3.42) BS02 dna ? GO:0000786 ... P68431 32327602
    587421 6yov:F (3.42) BS01 dna ? GO:0000781 ... P62805 32327602
    587422 6yov:G (3.42) BS01 dna ? GO:0000786 ... P04908 32327602
    587423 6yov:G (3.42) BS02 dna ? GO:0000786 ... P04908 32327602
    587424 6yov:H (3.42) BS01 dna ? GO:0000786 ... P06899 32327602
    587425 6yov:H (3.42) BS02 PTD ? GO:0000786 ... P06899 32327602
    587426 6yov:L (3.42) BS01 dna ? N/A P48431 32327602
    587427 6yov:L (3.42) BS02 dna ? N/A P48431 32327602
    587428 6yow:A (1.23) BS01 peptide ? GO:0000122 ... P31947 32816380
    587429 6yow:A (1.23) BS02 L3Y ? GO:0000122 ... P31947 32816380
    587430 6yox:A (2.05) BS01 peptide ? GO:0000122 ... P31947 32816380
    587431 6yox:A (2.05) BS02 L3V ? GO:0000122 ... P31947 32816380
    587432 6yox:A (2.05) BS03 CA ? GO:0000122 ... P31947 32816380
    587433 6yoy:A (1.8) BS01 peptide ? GO:0000122 ... P31947 32816380
    587434 6yoy:A (1.8) BS02 L3S ? GO:0000122 ... P31947 32816380
    587435 6yoz:AAA (1.88) BS01 BGC 3.2.1.4 GO:0004553 ... P56680 34458755
    587436 6yoz:AAA (1.88) BS02 YLL 3.2.1.4 GO:0004553 ... P56680 34458755
    587437 6yoz:BBB (1.88) BS01 BGC 3.2.1.4 GO:0004553 ... P56680 34458755
    587438 6yoz:BBB (1.88) BS02 YLL 3.2.1.4 GO:0004553 ... P56680 34458755
    587439 6yp2:A (1.8) BS01 peptide ? GO:0000122 ... P31947 32816380
    587440 6yp2:A (1.8) BS02 P5N ? GO:0000122 ... P31947 32816380
    587441 6yp3:A (1.8) BS01 peptide ? GO:0000122 ... P31947 32816380
    587442 6yp3:A (1.8) BS02 P5Q ? GO:0000122 ... P31947 32816380
    587443 6yp4:A (1.94541) BS01 MG ? GO:0016462 ... E1AQY1 33075486
    587444 6yp4:A (1.94541) BS02 MG ? GO:0016462 ... E1AQY1 33075486
    587445 6yp7:A (3.8) BS01 OEX 1.10.3.9 GO:0005506 ... P06585 33207833
    587446 6yp7:A (3.8) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 33207833
    587447 6yp7:A (3.8) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    587448 6yp7:A (3.8) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    587449 6yp7:A (3.8) BS05 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    587450 6yp7:A (3.8) BS06 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    587451 6yp7:A (3.8) BS07 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    587452 6yp7:A (3.8) BS08 BCT 1.10.3.9 GO:0005506 ... P06585 33207833
    587453 6yp7:B (3.8) BS01 CLA ? GO:0009507 ... Q9XQR6 33207833
    587454 6yp7:B (3.8) BS02 CLA ? GO:0009507 ... Q9XQR6 33207833
    587455 6yp7:B (3.8) BS03 CLA ? GO:0009507 ... Q9XQR6 33207833
    587456 6yp7:B (3.8) BS04 CLA ? GO:0009507 ... Q9XQR6 33207833
    587457 6yp7:B (3.8) BS05 CLA ? GO:0009507 ... Q9XQR6 33207833
    587458 6yp7:B (3.8) BS06 CLA ? GO:0009507 ... Q9XQR6 33207833
    587459 6yp7:B (3.8) BS07 CLA ? GO:0009507 ... Q9XQR6 33207833
    587460 6yp7:B (3.8) BS08 CLA ? GO:0009507 ... Q9XQR6 33207833
    587461 6yp7:B (3.8) BS09 CLA ? GO:0009507 ... Q9XQR6 33207833
    587462 6yp7:B (3.8) BS10 CLA ? GO:0009507 ... Q9XQR6 33207833
    587463 6yp7:B (3.8) BS11 CLA ? GO:0009507 ... Q9XQR6 33207833
    587464 6yp7:B (3.8) BS12 CLA ? GO:0009507 ... Q9XQR6 33207833
    587465 6yp7:B (3.8) BS13 CLA ? GO:0009507 ... Q9XQR6 33207833
    587466 6yp7:B (3.8) BS14 CLA ? GO:0009507 ... Q9XQR6 33207833
    587467 6yp7:B (3.8) BS15 CLA ? GO:0009507 ... Q9XQR6 33207833
    587468 6yp7:C (3.8) BS01 OEX ? GO:0005737 ... P06004 33207833
    587469 6yp7:C (3.8) BS02 CLA ? GO:0005737 ... P06004 33207833
    587470 6yp7:C (3.8) BS03 CLA ? GO:0005737 ... P06004 33207833
    587471 6yp7:C (3.8) BS04 CLA ? GO:0005737 ... P06004 33207833
    587472 6yp7:C (3.8) BS05 CLA ? GO:0005737 ... P06004 33207833
    587473 6yp7:C (3.8) BS06 CLA ? GO:0005737 ... P06004 33207833
    587474 6yp7:C (3.8) BS07 CLA ? GO:0005737 ... P06004 33207833
    587475 6yp7:C (3.8) BS08 CLA ? GO:0005737 ... P06004 33207833
    587476 6yp7:C (3.8) BS09 CLA ? GO:0005737 ... P06004 33207833
    587477 6yp7:C (3.8) BS10 CLA ? GO:0005737 ... P06004 33207833
    587478 6yp7:C (3.8) BS11 CLA ? GO:0005737 ... P06004 33207833
    587479 6yp7:C (3.8) BS12 CLA ? GO:0005737 ... P06004 33207833
    587480 6yp7:C (3.8) BS13 CLA ? GO:0005737 ... P06004 33207833
    587481 6yp7:C (3.8) BS14 CLA ? GO:0005737 ... P06004 33207833
    587482 6yp7:D (3.8) BS01 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    587483 6yp7:D (3.8) BS02 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    587484 6yp7:D (3.8) BS03 BCT 1.10.3.9 GO:0005506 ... P06006 33207833
    587485 6yp7:D (3.8) BS04 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    587486 6yp7:D (3.8) BS05 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    587487 6yp7:E (3.8) BS01 HEM ? GO:0005506 ... P13554 33207833
    587488 6yp7:F (3.8) BS01 HEM ? GO:0009523 ... P62096 33207833
    587489 6yp7:G (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    587490 6yp7:G (3.8) BS02 CLA ? GO:0009765 ... P27490 33207833
    587491 6yp7:G (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    587492 6yp7:G (3.8) BS04 CHL ? GO:0009765 ... P27490 33207833
    587493 6yp7:G (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    587494 6yp7:G (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    587495 6yp7:G (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    587496 6yp7:G (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    587497 6yp7:G (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    587498 6yp7:G (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    587499 6yp7:G (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    587500 6yp7:G (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    587501 6yp7:G (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    587502 6yp7:G (3.8) BS14 CHL ? GO:0009765 ... P27490 33207833
    587503 6yp7:H (3.8) BS01 CLA ? GO:0009523 ... Q9XQR3 33207833
    587504 6yp7:H (3.8) BS02 CLA ? GO:0009523 ... Q9XQR3 33207833
    587505 6yp7:N (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    587506 6yp7:N (3.8) BS02 CLA ? GO:0009765 ... P27490 33207833
    587507 6yp7:N (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    587508 6yp7:N (3.8) BS04 CHL ? GO:0009765 ... P27490 33207833
    587509 6yp7:N (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    587510 6yp7:N (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    587511 6yp7:N (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    587512 6yp7:N (3.8) BS08 CLA ? GO:0009765 ... P27490 33207833
    587513 6yp7:N (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    587514 6yp7:N (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    587515 6yp7:N (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    587516 6yp7:N (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    587517 6yp7:N (3.8) BS13 CHL ? GO:0009765 ... P27490 33207833
    587518 6yp7:R (3.8) BS01 CHL N/A GO:0009765 ... N/A 33207833
    587519 6yp7:R (3.8) BS02 CLA N/A GO:0009765 ... N/A 33207833
    587520 6yp7:R (3.8) BS03 CLA N/A GO:0009765 ... N/A 33207833
    587521 6yp7:R (3.8) BS04 CLA N/A GO:0009765 ... N/A 33207833
    587522 6yp7:R (3.8) BS05 CHL N/A GO:0009765 ... N/A 33207833
    587523 6yp7:R (3.8) BS06 CHL N/A GO:0009765 ... N/A 33207833
    587524 6yp7:R (3.8) BS07 CHL N/A GO:0009765 ... N/A 33207833
    587525 6yp7:R (3.8) BS08 CLA N/A GO:0009765 ... N/A 33207833
    587526 6yp7:R (3.8) BS09 CLA N/A GO:0009765 ... N/A 33207833
    587527 6yp7:R (3.8) BS10 CLA N/A GO:0009765 ... N/A 33207833
    587528 6yp7:R (3.8) BS11 CLA N/A GO:0009765 ... N/A 33207833
    587529 6yp7:S (3.8) BS01 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587530 6yp7:S (3.8) BS02 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587531 6yp7:S (3.8) BS03 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587532 6yp7:S (3.8) BS04 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587533 6yp7:S (3.8) BS05 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587534 6yp7:S (3.8) BS06 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587535 6yp7:S (3.8) BS07 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587536 6yp7:S (3.8) BS08 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587537 6yp7:S (3.8) BS09 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587538 6yp7:S (3.8) BS10 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587539 6yp7:S (3.8) BS11 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587540 6yp7:S (3.8) BS12 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587541 6yp7:S (3.8) BS13 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587542 6yp7:S (3.8) BS14 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587543 6yp7:W (3.8) BS01 CLA ? GO:0009507 ... A0A2D0TCJ2 33207833
    587544 6yp7:Y (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    587545 6yp7:Y (3.8) BS02 CHL ? GO:0009765 ... P27490 33207833
    587546 6yp7:Y (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    587547 6yp7:Y (3.8) BS04 CLA ? GO:0009765 ... P27490 33207833
    587548 6yp7:Y (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    587549 6yp7:Y (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    587550 6yp7:Y (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    587551 6yp7:Y (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    587552 6yp7:Y (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    587553 6yp7:Y (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    587554 6yp7:Y (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    587555 6yp7:Y (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    587556 6yp7:Y (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    587557 6yp7:Y (3.8) BS14 CHL ? GO:0009765 ... P27490 33207833
    587558 6yp7:a (3.8) BS01 OEX 1.10.3.9 GO:0005506 ... P06585 33207833
    587559 6yp7:a (3.8) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 33207833
    587560 6yp7:a (3.8) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    587561 6yp7:a (3.8) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    587562 6yp7:a (3.8) BS05 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    587563 6yp7:a (3.8) BS06 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    587564 6yp7:a (3.8) BS07 BCT 1.10.3.9 GO:0005506 ... P06585 33207833
    587565 6yp7:a (3.8) BS08 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    587566 6yp7:b (3.8) BS01 CLA ? GO:0009507 ... Q9XQR6 33207833
    587567 6yp7:b (3.8) BS02 CLA ? GO:0009507 ... Q9XQR6 33207833
    587568 6yp7:b (3.8) BS03 CLA ? GO:0009507 ... Q9XQR6 33207833
    587569 6yp7:b (3.8) BS04 CLA ? GO:0009507 ... Q9XQR6 33207833
    587570 6yp7:b (3.8) BS05 CLA ? GO:0009507 ... Q9XQR6 33207833
    587571 6yp7:b (3.8) BS06 CLA ? GO:0009507 ... Q9XQR6 33207833
    587572 6yp7:b (3.8) BS07 CLA ? GO:0009507 ... Q9XQR6 33207833
    587573 6yp7:b (3.8) BS08 CLA ? GO:0009507 ... Q9XQR6 33207833
    587574 6yp7:b (3.8) BS09 CLA ? GO:0009507 ... Q9XQR6 33207833
    587575 6yp7:b (3.8) BS10 CLA ? GO:0009507 ... Q9XQR6 33207833
    587576 6yp7:b (3.8) BS11 CLA ? GO:0009507 ... Q9XQR6 33207833
    587577 6yp7:b (3.8) BS12 CLA ? GO:0009507 ... Q9XQR6 33207833
    587578 6yp7:b (3.8) BS13 CLA ? GO:0009507 ... Q9XQR6 33207833
    587579 6yp7:b (3.8) BS14 CLA ? GO:0009507 ... Q9XQR6 33207833
    587580 6yp7:b (3.8) BS15 CLA ? GO:0009507 ... Q9XQR6 33207833
    587581 6yp7:c (3.8) BS01 OEX ? GO:0005737 ... P06004 33207833
    587582 6yp7:c (3.8) BS02 CLA ? GO:0005737 ... P06004 33207833
    587583 6yp7:c (3.8) BS03 CLA ? GO:0005737 ... P06004 33207833
    587584 6yp7:c (3.8) BS04 CLA ? GO:0005737 ... P06004 33207833
    587585 6yp7:c (3.8) BS05 CLA ? GO:0005737 ... P06004 33207833
    587586 6yp7:c (3.8) BS06 CLA ? GO:0005737 ... P06004 33207833
    587587 6yp7:c (3.8) BS07 CLA ? GO:0005737 ... P06004 33207833
    587588 6yp7:c (3.8) BS08 CLA ? GO:0005737 ... P06004 33207833
    587589 6yp7:c (3.8) BS09 CLA ? GO:0005737 ... P06004 33207833
    587590 6yp7:c (3.8) BS10 CLA ? GO:0005737 ... P06004 33207833
    587591 6yp7:c (3.8) BS11 CLA ? GO:0005737 ... P06004 33207833
    587592 6yp7:c (3.8) BS12 CLA ? GO:0005737 ... P06004 33207833
    587593 6yp7:c (3.8) BS13 CLA ? GO:0005737 ... P06004 33207833
    587594 6yp7:c (3.8) BS14 CLA ? GO:0005737 ... P06004 33207833
    587595 6yp7:d (3.8) BS01 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    587596 6yp7:d (3.8) BS02 BCT 1.10.3.9 GO:0005506 ... P06006 33207833
    587597 6yp7:d (3.8) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    587598 6yp7:d (3.8) BS04 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    587599 6yp7:d (3.8) BS05 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    587600 6yp7:d (3.8) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 33207833

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).