SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587601 6yp7:e (3.8) BS01 HEM ? GO:0005506 ... P13554 33207833
    587602 6yp7:f (3.8) BS01 HEM ? GO:0009523 ... P62096 33207833
    587603 6yp7:g (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    587604 6yp7:g (3.8) BS02 CLA ? GO:0009765 ... P27490 33207833
    587605 6yp7:g (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    587606 6yp7:g (3.8) BS04 CHL ? GO:0009765 ... P27490 33207833
    587607 6yp7:g (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    587608 6yp7:g (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    587609 6yp7:g (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    587610 6yp7:g (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    587611 6yp7:g (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    587612 6yp7:g (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    587613 6yp7:g (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    587614 6yp7:g (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    587615 6yp7:g (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    587616 6yp7:h (3.8) BS01 CLA ? GO:0009523 ... Q9XQR3 33207833
    587617 6yp7:h (3.8) BS02 CLA ? GO:0009523 ... Q9XQR3 33207833
    587618 6yp7:i (3.8) BS01 CLA ? GO:0009507 ... D5MAJ9 33207833
    587619 6yp7:n (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    587620 6yp7:n (3.8) BS02 CHL ? GO:0009765 ... P27490 33207833
    587621 6yp7:n (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    587622 6yp7:n (3.8) BS04 CLA ? GO:0009765 ... P27490 33207833
    587623 6yp7:n (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    587624 6yp7:n (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    587625 6yp7:n (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    587626 6yp7:n (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    587627 6yp7:n (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    587628 6yp7:n (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    587629 6yp7:n (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    587630 6yp7:n (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    587631 6yp7:n (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    587632 6yp7:n (3.8) BS14 CHL ? GO:0009765 ... P27490 33207833
    587633 6yp7:r (3.8) BS01 CHL N/A GO:0009765 ... N/A 33207833
    587634 6yp7:r (3.8) BS02 CLA N/A GO:0009765 ... N/A 33207833
    587635 6yp7:r (3.8) BS03 CLA N/A GO:0009765 ... N/A 33207833
    587636 6yp7:r (3.8) BS04 CLA N/A GO:0009765 ... N/A 33207833
    587637 6yp7:r (3.8) BS05 CHL N/A GO:0009765 ... N/A 33207833
    587638 6yp7:r (3.8) BS06 CHL N/A GO:0009765 ... N/A 33207833
    587639 6yp7:r (3.8) BS07 CHL N/A GO:0009765 ... N/A 33207833
    587640 6yp7:r (3.8) BS08 CLA N/A GO:0009765 ... N/A 33207833
    587641 6yp7:r (3.8) BS09 CLA N/A GO:0009765 ... N/A 33207833
    587642 6yp7:r (3.8) BS10 CLA N/A GO:0009765 ... N/A 33207833
    587643 6yp7:r (3.8) BS11 CLA N/A GO:0009765 ... N/A 33207833
    587644 6yp7:s (3.8) BS01 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587645 6yp7:s (3.8) BS02 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587646 6yp7:s (3.8) BS03 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587647 6yp7:s (3.8) BS04 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587648 6yp7:s (3.8) BS05 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587649 6yp7:s (3.8) BS06 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587650 6yp7:s (3.8) BS07 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587651 6yp7:s (3.8) BS08 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    587652 6yp7:s (3.8) BS09 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587653 6yp7:s (3.8) BS10 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587654 6yp7:s (3.8) BS11 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587655 6yp7:s (3.8) BS12 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587656 6yp7:s (3.8) BS13 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587657 6yp7:s (3.8) BS14 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    587658 6yp7:y (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    587659 6yp7:y (3.8) BS02 CHL ? GO:0009765 ... P27490 33207833
    587660 6yp7:y (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    587661 6yp7:y (3.8) BS04 CLA ? GO:0009765 ... P27490 33207833
    587662 6yp7:y (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    587663 6yp7:y (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    587664 6yp7:y (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    587665 6yp7:y (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    587666 6yp7:y (3.8) BS09 CHL ? GO:0009765 ... P27490 33207833
    587667 6yp7:y (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    587668 6yp7:y (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    587669 6yp7:y (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    587670 6yp7:y (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    587671 6yp7:y (3.8) BS14 CLA ? GO:0009765 ... P27490 33207833
    587672 6yp8:A (1.8) BS01 peptide ? GO:0000122 ... P31947 32816380
    587673 6yp8:A (1.8) BS02 P6Z ? GO:0000122 ... P31947 32816380
    587674 6yp9:A (2.564) BS01 ATP 3.6.4.- GO:0000287 ... P68135 33483497
    587675 6ypa:A (1.58) BS01 P6W ? GO:0016787 ... O58376 N/A
    587676 6ypa:B (1.58) BS01 P6W ? GO:0016787 ... O58376 N/A
    587677 6ypa:C (1.58) BS01 P6W ? GO:0016787 ... O58376 N/A
    587678 6ypa:D (1.58) BS01 P6W ? GO:0016787 ... O58376 N/A
    587679 6ypd:A (1.6) BS01 KL8 3.5.2.6 GO:0008800 ... P00811 32545682
    587680 6ype:A (1.45) BS01 CA ? N/A Q15818 32855309
    587681 6ype:A (1.45) BS02 CA ? N/A Q15818 32855309
    587682 6ype:B (1.45) BS01 CA ? N/A Q15818 32855309
    587683 6ype:B (1.45) BS02 CA ? N/A Q15818 32855309
    587684 6ypf:A (1.45) BS01 GPP 3.6.1.68 GO:0005737 ... M4I1C6 32639596
    587685 6ypg:A (1.51) BS01 N5Q 2.7.11.1 GO:0004672 ... P68400 33119282 BindingDB: IC50=600nM, Kd=110nM, Ki=180nM
    587686 6yph:A (1.67) BS01 N5Q 2.7.11.1 GO:0004672 ... P68400 33119282 BindingDB: IC50=600nM, Kd=110nM, Ki=180nM
    587687 6yph:B (1.67) BS01 N5Q 2.7.11.1 GO:0004672 ... P68400 33119282 BindingDB: IC50=600nM, Kd=110nM, Ki=180nM
    587688 6ypi:A (1.479) BS01 ZN N/A N/A N/A 33526894
    587689 6ypj:A (1.64) BS01 P5W 2.7.11.1 GO:0004672 ... P68400 33119282 BindingDB: Ki=1100nM, IC50=9000nM
    587690 6ypk:A (1.79) BS01 GDP 2.7.11.1 GO:0004672 ... P68400 33119282
    587691 6ypl:A (1.8) BS01 peptide ? GO:0000122 ... P31947 32816380
    587692 6ypl:A (1.8) BS02 P6H ? GO:0000122 ... P31947 32816380
    587693 6ypn:B (1.58) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 33119282
    587694 6ypn:B (1.58) BS02 ADP 2.7.11.1 GO:0004672 ... P68400 33119282
    587695 6ypn:B (1.58) BS03 MG 2.7.11.1 GO:0004672 ... P68400 33119282
    587696 6ypn:B (1.58) BS04 PO4 2.7.11.1 GO:0004672 ... P68400 33119282
    587697 6ypo:A (1.67) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    587698 6ypo:B (1.67) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    587699 6ypp:A (1.75) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    587700 6ypp:A (1.75) BS02 ISQ 2.7.11.11 GO:0000287 ... P25321 N/A
    587701 6ypq:A (1.29) BS01 GLY ? GO:0009579 ... P50032 33559611
    587702 6ypq:A (1.29) BS02 LYS ? GO:0009579 ... P50032 33559611
    587703 6ypq:B (1.29) BS01 LYS ? GO:0009579 ... P50033 33559611
    587704 6yps:A (1.35) BS01 P72 2.7.11.11 GO:0000287 ... P25321 33021032
    587705 6ypt:A (3.663) BS01 GVE 2.1.1.-
    2.7.7.48
    3.4.19.12
    3.4.22.-
    3.6.4.-
    GO:0004197 ... P10358 N/A
    587706 6ypt:C (3.663) BS01 GVE 2.1.1.-
    2.7.7.48
    3.4.19.12
    3.4.22.-
    3.6.4.-
    GO:0004197 ... P10358 N/A
    587707 6ypu:e (2.9) BS01 rna ? GO:0003723 ... D0CD21 32857965
    587708 6ypu:f (2.9) BS01 rna ? GO:0003723 ... D0CD14 32857965
    587709 6ypu:f (2.9) BS02 rna ? GO:0003723 ... D0CD14 32857965
    587710 6ypu:g (2.9) BS01 rna ? GO:0003735 ... D0C5Z0 32857965
    587711 6ypu:i (2.9) BS01 rna ? GO:0003735 ... D0CD11 32857965
    587712 6ypu:l (2.9) BS01 rna ? GO:0003735 ... D0CD20 32857965
    587713 6ypu:l (2.9) BS02 rna ? GO:0003735 ... D0CD20 32857965
    587714 6ypu:m (2.9) BS01 rna ? GO:0000049 ... D0C9P6 32857965
    587715 6ypu:p (2.9) BS01 rna ? GO:0003735 ... D0CAU9 32857965
    587716 6ypu:q (2.9) BS01 rna ? GO:0003735 ... D0CCR5 32857965
    587717 6ypu:r (2.9) BS01 rna ? GO:0003735 ... D0CD06 32857965
    587718 6ypu:s (2.9) BS01 rna ? GO:0003735 ... D0C5Y9 32857965
    587719 6ypu:u (2.9) BS01 rna ? GO:0003723 ... D0C7N1 32857965
    587720 6ypu:u (2.9) BS02 rna ? GO:0003723 ... D0C7N1 32857965
    587721 6ypu:v (2.9) BS01 rna ? GO:0003735 ... D0C5Q3 32857965
    587722 6ypv:A (2.1) BS01 FE 1.14.11.33 GO:0005515 ... P05050 32939282
    587723 6ypv:A (2.1) BS02 AKG 1.14.11.33 GO:0005515 ... P05050 32939282
    587724 6ypw:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34283610
    587725 6ypw:A (1.1) BS02 P75 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34283610 BindingDB: Ki=9.3nM
    587726 6ypy:A (1.4) BS01 peptide ? GO:0000122 ... P31947 32816380
    587727 6ypy:A (1.4) BS02 P7E ? GO:0000122 ... P31947 32816380
    587728 6ypz:AAA (1.08) BS01 NDP ? GO:0016491 ... A0A2S6PN47 32840360
    587729 6ypz:BBB (1.08) BS01 NDP ? GO:0016491 ... A0A2S6PN47 32840360
    587730 6yq0:AAA (1.08) BS01 NAP ? GO:0016491 ... A0A2S6PN47 32840360
    587731 6yq0:AAA (1.08) BS02 P7K ? GO:0016491 ... A0A2S6PN47 32840360
    587732 6yq0:BBB (1.08) BS01 NAP ? GO:0016491 ... A0A2S6PN47 32840360
    587733 6yq0:BBB (1.08) BS02 P7K ? GO:0016491 ... A0A2S6PN47 32840360
    587734 6yq1:A (1.784) BS01 P7N 2.7.10.2 GO:0004672 ... Q05397 33497606
    587735 6yq1:B (1.784) BS01 P7N 2.7.10.2 GO:0004672 ... Q05397 33497606
    587736 6yq1:C (1.784) BS01 P7N 2.7.10.2 GO:0004672 ... Q05397 33497606
    587737 6yq1:D (1.784) BS01 P7N 2.7.10.2 GO:0004672 ... Q05397 33497606
    587738 6yq2:A (1.4) BS01 peptide ? GO:0000122 ... P31947 32816380
    587739 6yq2:A (1.4) BS02 P7T ? GO:0000122 ... P31947 32816380
    587740 6yq3:AAA (1.57) BS01 NAP ? GO:0016491 ... A0A2S6PN47 32840360
    587741 6yq3:AAA (1.57) BS02 P7Q ? GO:0016491 ... A0A2S6PN47 32840360
    587742 6yq3:BBB (1.57) BS01 NAP ? GO:0016491 ... A0A2S6PN47 32840360
    587743 6yq3:BBB (1.57) BS02 P7Q ? GO:0016491 ... A0A2S6PN47 32840360
    587744 6yq4:A (2.399) BS01 MG ? GO:0016787 ... Q8RFS1 33336898
    587745 6yq4:B (2.399) BS01 SPD ? GO:0016787 ... Q8RFS1 33336898
    587746 6yq4:B (2.399) BS02 MG ? GO:0016787 ... Q8RFS1 33336898
    587747 6yq4:C (2.399) BS01 MG ? GO:0016787 ... Q8RFS1 33336898
    587748 6yq7:A (1.58) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33497208
    587749 6yq7:B (1.58) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33497208
    587750 6yq9:AAA (1.55) BS01 5QP 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587751 6yq9:AAA (1.55) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587752 6yq9:BBB (1.55) BS01 5QP 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587753 6yq9:BBB (1.55) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587754 6yqa:AAA (1.67) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587755 6yqa:AAA (1.67) BS02 GLC 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587756 6yqa:AAA (1.67) BS03 P9Q 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587757 6yqa:BBB (1.67) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587758 6yqa:BBB (1.67) BS02 GLC 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587759 6yqa:BBB (1.67) BS03 P9Q 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587760 6yqb:AAA (1.5) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587761 6yqb:AAA (1.5) BS02 GLC 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587762 6yqb:AAA (1.5) BS03 93Z 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587763 6yqb:BBB (1.5) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587764 6yqb:BBB (1.5) BS02 GLC 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587765 6yqb:BBB (1.5) BS03 93Z 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587766 6yqc:AAA (1.35) BS01 QJN 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587767 6yqc:AAA (1.35) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587768 6yqc:BBB (1.35) BS01 QJN 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587769 6yqc:BBB (1.35) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    587770 6yqg:B (1.45) BS01 TE4 ? GO:0009579 ... P50033 33559611
    587771 6yqh:AAA (1.41) BS01 PJ5 ? GO:0005975 ... Q8AAW3 33528085
    587772 6yqh:AAA (1.41) BS02 ZN ? GO:0005975 ... Q8AAW3 33528085
    587773 6yqi:A (1.42) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587774 6yqi:A (1.42) BS02 6TV 2.7.11.11 GO:0000287 ... P25321 33029876
    587775 6yqj:A (1.58) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587776 6yqj:A (1.58) BS02 6TX 2.7.11.11 GO:0000287 ... P25321 33029876
    587777 6yqk:A (1.67) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 33029876
    587778 6yqk:A (1.67) BS02 7KB 2.7.11.11 GO:0000287 ... P25321 33029876
    587779 6yqm:AAA (1.02) BS01 DGP 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 34329705
    587780 6yqn:A (1.05) BS01 P8T ? N/A O60885 32599645 MOAD: ic50=0.72uM
    587781 6yqo:A (1.07) BS01 P8Q ? N/A O60885 32599645 MOAD: ic50=4.53uM
    587782 6yqp:A (1.25) BS01 P8N ? N/A O60885 32599645 MOAD: ic50=1.35uM
    587783 6yqq:A (2.5) BS01 PRP ? GO:0005524 ... A0A5S9CYM0 32515440 MOAD: Kd=4uM
    587784 6yqr:AAA (1.684) BS01 P8W ? N/A Q9H8M2 32410449 BindingDB: IC50=100nM
    587785 6yqs:AAA (1.683) BS01 P8Z ? N/A Q9H8M2 32410449 BindingDB: IC50=200nM, Ki=40nM
    587786 6yqt:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    587787 6yqt:A (1.5) BS02 P9E 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    587788 6yqt:A (1.5) BS03 P9E 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    587789 6yqu:A (1.478) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    587790 6yqu:A (1.478) BS02 P92 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32573627
    587791 6yqv:H (1.45) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587792 6yqv:H (1.45) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587793 6yqv:H (1.45) BS03 8K2 3.4.21.5 GO:0004252 ... P00734 N/A
    587794 6yqw:A (1.5) BS01 82I ? N/A Q9H8M2 32410449 BindingDB: IC50=25119nM
    587795 6yqz:A (1.39) BS01 P8W ? N/A O60885 32410449 BindingDB: IC50=12589nM
    587796 6yr1:AAA (2.3) BS01 T1C ? GO:0000976 ... P0ACT4 N/A
    587797 6yr2:AAA (1.95) BS01 T1C ? GO:0000976 ... P0ACT4 N/A
    587798 6yr2:BBB (1.95) BS01 T1C ? GO:0000976 ... P0ACT4 N/A
    587799 6yr3:A (1.48) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587800 6yr3:B (1.48) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).