SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    58601 1vvj:QN (3.44) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    58602 1vvj:QO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    58603 1vvj:QO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    58604 1vvj:QP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    58605 1vvj:QQ (3.44) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    58606 1vvj:QR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    58607 1vvj:QS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    58608 1vvj:QT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    58609 1vvj:R0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    58610 1vvj:R0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    58611 1vvj:R0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    58612 1vvj:R1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    58613 1vvj:R2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    58614 1vvj:R3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    58615 1vvj:R3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    58616 1vvj:R4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    58617 1vvj:R5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    58618 1vvj:R6 (3.44) BS01 rna ? GO:0003735 ... P35871 25128388
    58619 1vvj:R7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    58620 1vvj:R8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    58621 1vvj:RD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    58622 1vvj:RD (3.44) BS02 rna ? GO:0002181 ... P60405 25128388
    58623 1vvj:RD (3.44) BS03 MG ? GO:0002181 ... P60405 25128388
    58624 1vvj:RE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    58625 1vvj:RF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    58626 1vvj:RG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    58627 1vvj:RG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    58628 1vvj:RH (3.44) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    58629 1vvj:RI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    58630 1vvj:RN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    58631 1vvj:RO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    58632 1vvj:RO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    58633 1vvj:RP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    58634 1vvj:RQ (3.44) BS01 rna ? GO:0003735 ... P60489 25128388
    58635 1vvj:RR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    58636 1vvj:RS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    58637 1vvj:RS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    58638 1vvj:RT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    58639 1vvj:RT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    58640 1vvj:RU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    58641 1vvj:RV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    58642 1vvj:RW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    58643 1vvj:RX (3.44) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    58644 1vvj:RY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    58645 1vvj:RZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    58646 1vvj:XB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    58647 1vvj:XC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    58648 1vvj:XD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    58649 1vvj:XD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    58650 1vvj:XE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    58651 1vvj:XF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    58652 1vvj:XG (3.44) BS01 rna ? GO:0000049 ... P17291 25128388
    58653 1vvj:XH (3.44) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    58654 1vvj:XI (3.44) BS01 rna ? GO:0003723 ... P80374 25128388
    58655 1vvj:XI (3.44) BS02 rna ? GO:0003723 ... P80374 25128388
    58656 1vvj:XJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    58657 1vvj:XK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    58658 1vvj:XL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    58659 1vvj:XM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    58660 1vvj:XM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    58661 1vvj:XM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    58662 1vvj:XN (3.44) BS01 rna N/A GO:0003735 ... P0DOY6 25128388
    58663 1vvj:XN (3.44) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    58664 1vvj:XO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    58665 1vvj:XO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    58666 1vvj:XP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    58667 1vvj:XQ (3.44) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    58668 1vvj:XR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    58669 1vvj:XS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    58670 1vvj:XT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    58671 1vvj:Y0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    58672 1vvj:Y0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    58673 1vvj:Y0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    58674 1vvj:Y1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    58675 1vvj:Y2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    58676 1vvj:Y3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    58677 1vvj:Y3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    58678 1vvj:Y4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    58679 1vvj:Y5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    58680 1vvj:Y6 (3.44) BS01 rna ? GO:0003735 ... P35871 25128388
    58681 1vvj:Y7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    58682 1vvj:Y8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    58683 1vvj:YD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    58684 1vvj:YD (3.44) BS02 MG ? GO:0002181 ... P60405 25128388
    58685 1vvj:YE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    58686 1vvj:YF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    58687 1vvj:YG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    58688 1vvj:YG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    58689 1vvj:YH (3.44) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    58690 1vvj:YI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    58691 1vvj:YI (3.44) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    58692 1vvj:YN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    58693 1vvj:YO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    58694 1vvj:YO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    58695 1vvj:YP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    58696 1vvj:YQ (3.44) BS01 rna ? GO:0003735 ... P60489 25128388
    58697 1vvj:YR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    58698 1vvj:YS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    58699 1vvj:YS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    58700 1vvj:YT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    58701 1vvj:YT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    58702 1vvj:YU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    58703 1vvj:YV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    58704 1vvj:YW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    58705 1vvj:YX (3.44) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    58706 1vvj:YY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    58707 1vvj:YZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    58708 1vwa:B (1.85) BS01 peptide ? GO:0009374 ... P22629 9148939
    58709 1vwa:D (1.85) BS01 peptide ? GO:0009374 ... P22629 9148939
    58710 1vwb:B (1.82) BS01 peptide ? GO:0009374 ... P22629 9148939
    58711 1vwc:B (1.86) BS01 peptide ? GO:0009374 ... P22629 9148939
    58712 1vwd:B (1.87) BS01 peptide ? GO:0009374 ... P22629 9148939
    58713 1vwe:B (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    58714 1vwf:B (1.92) BS01 peptide ? GO:0009374 ... P22629 9148939
    58715 1vwg:B (1.46) BS01 peptide ? GO:0009374 ... P22629 9148939
    58716 1vwh:B (1.48) BS01 peptide ? GO:0009374 ... P22629 9148939
    58717 1vwi:B (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    58718 1vwi:D (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    58719 1vwj:B (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    58720 1vwj:D (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    58721 1vwk:B (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    58722 1vwk:D (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    58723 1vwl:B (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    58724 1vwl:D (1.45) BS01 peptide ? GO:0009374 ... P22629 9148939
    58725 1vwm:B (1.6) BS01 peptide ? GO:0009374 ... P22629 9148939
    58726 1vwn:B (1.85) BS01 peptide ? GO:0009374 ... P22629 9148939
    58727 1vwo:B (1.65) BS01 peptide ? GO:0009374 ... P22629 9148939
    58728 1vwp:B (1.75) BS01 peptide ? GO:0009374 ... P22629 9148939
    58729 1vwq:B (1.7) BS01 peptide ? GO:0009374 ... P22629 9148939
    58730 1vwr:B (1.5) BS01 peptide ? GO:0009374 ... P22629 9148939
    58731 1vwt:A (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    58732 1vwt:B (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    58733 1vwt:C (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    58734 1vwt:D (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    58735 1vxa:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58736 1vxb:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58737 1vxc:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58738 1vxd:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58739 1vxe:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58740 1vxf:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58741 1vxg:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58742 1vxh:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8642596
    58743 1vxo:A (2.4) BS01 VXA 3.1.1.7 GO:0001507 ... P04058 N/A
    58744 1vxr:A (2.2) BS01 VX 3.1.1.7 GO:0001507 ... P04058 N/A
    58745 1vy4:AB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    58746 1vy4:AB (2.6) BS02 MG ? GO:0003735 ... P80371 25132179
    58747 1vy4:AC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    58748 1vy4:AD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    58749 1vy4:AD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    58750 1vy4:AE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    58751 1vy4:AE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    58752 1vy4:AF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    58753 1vy4:AG (2.6) BS01 rna ? GO:0000049 ... P17291 25132179
    58754 1vy4:AG (2.6) BS02 rna ? GO:0000049 ... P17291 25132179
    58755 1vy4:AH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    58756 1vy4:AI (2.6) BS01 rna ? GO:0003723 ... P80374 25132179
    58757 1vy4:AI (2.6) BS02 rna ? GO:0003723 ... P80374 25132179
    58758 1vy4:AJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    58759 1vy4:AK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    58760 1vy4:AK (2.6) BS02 MG ? GO:0003735 ... P80376 25132179
    58761 1vy4:AL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    58762 1vy4:AL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    58763 1vy4:AM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    58764 1vy4:AM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    58765 1vy4:AM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    58766 1vy4:AM (2.6) BS04 MG ? GO:0000049 ... P80377 25132179
    58767 1vy4:AN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    58768 1vy4:AN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    58769 1vy4:AO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    58770 1vy4:AO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    58771 1vy4:AP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    58772 1vy4:AQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    58773 1vy4:AR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    58774 1vy4:AS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    58775 1vy4:AT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    58776 1vy4:AT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    58777 1vy4:B0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    58778 1vy4:B0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    58779 1vy4:B0 (2.6) BS03 MG ? GO:0003735 ... P60493 25132179
    58780 1vy4:B1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    58781 1vy4:B1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    58782 1vy4:B2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    58783 1vy4:B3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    58784 1vy4:B3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    58785 1vy4:B4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    58786 1vy4:B4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    58787 1vy4:B5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    58788 1vy4:B5 (2.6) BS02 MG ? GO:0003735 ... P80339 25132179
    58789 1vy4:B5 (2.6) BS03 ZN ? GO:0003735 ... P80339 25132179
    58790 1vy4:B6 (2.6) BS01 rna ? GO:0003735 ... P35871 25132179
    58791 1vy4:B6 (2.6) BS02 ZN ? GO:0003735 ... P35871 25132179
    58792 1vy4:B7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    58793 1vy4:B7 (2.6) BS02 MG ? GO:0003735 ... P80340 25132179
    58794 1vy4:B7 (2.6) BS03 MG ? GO:0003735 ... P80340 25132179
    58795 1vy4:B7 (2.6) BS04 MG ? GO:0003735 ... P80340 25132179
    58796 1vy4:B8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    58797 1vy4:B8 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    58798 1vy4:B9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    58799 1vy4:B9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    58800 1vy4:BD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).