SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587801 6yr3:C (1.48) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587802 6yr3:D (1.48) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587803 6yr3:E (1.48) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587804 6yr4:A (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587805 6yr4:B (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587806 6yr4:C (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587807 6yr4:D (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587808 6yr4:E (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587809 6yr4:F (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587810 6yr5:A (2.25) BS01 peptide ? GO:0000122 ... P31947 35286747
    587811 6yr5:B (2.25) BS01 peptide ? GO:0000122 ... P31947 35286747
    587812 6yr5:C (2.25) BS01 peptide ? GO:0000122 ... P31947 35286747
    587813 6yr5:D (2.25) BS01 peptide ? GO:0000122 ... P31947 35286747
    587814 6yr6:A (1.75) BS01 peptide ? GO:0000122 ... P31947 35286747
    587815 6yr6:C (1.75) BS01 peptide ? GO:0000122 ... P31947 35286747
    587816 6yr6:E (1.75) BS01 peptide ? GO:0000122 ... P31947 35286747
    587817 6yr6:G (1.75) BS01 peptide ? GO:0000122 ... P31947 35286747
    587818 6yr7:A (2.105) BS01 peptide ? GO:0000122 ... P31947 35286747
    587819 6yr7:B (2.105) BS01 peptide ? GO:0000122 ... P31947 35286747
    587820 6yr8:A (1.9) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    587821 6yr9:A (1.925) BS01 P9K 2.7.10.2 GO:0004672 ... Q05397 33497606
    587822 6yr9:B (1.925) BS01 P9K 2.7.10.2 GO:0004672 ... Q05397 33497606
    587823 6yr9:C (1.925) BS01 P9K 2.7.10.2 GO:0004672 ... Q05397 33497606
    587824 6yr9:D (1.925) BS01 P9K 2.7.10.2 GO:0004672 ... Q05397 33497606
    587825 6yra:B (4.0) BS01 ZN 3.5.2.- GO:0003824 ... A0A2W0FH34 33826169
    587826 6yra:D (4.0) BS01 ZN 3.5.2.- GO:0003824 ... A0A2W0FH34 33826169
    587827 6yrb:A (2.351) BS01 rna ? N/A Q9E006 32937107
    587828 6yrb:B (2.351) BS01 rna ? N/A Q9E006 32937107
    587829 6yrc:A (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587830 6yrc:B (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587831 6yrc:C (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587832 6yrc:D (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587833 6yrc:E (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587834 6yrc:F (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587835 6yrd:A (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587836 6yrd:B (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587837 6yrd:C (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587838 6yrd:D (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587839 6yrd:E (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587840 6yrd:F (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587841 6yrh:A (1.8) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587842 6yrh:B (1.8) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587843 6yrh:C (1.8) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587844 6yrh:D (1.8) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587845 6yrh:E (1.8) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587846 6yri:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 33000794
    587847 6yri:A (1.6) BS02 DHC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 33000794 BindingDB: Ki=1610nM
    587848 6yrj:A (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587849 6yrj:B (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587850 6yrj:C (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587851 6yrj:D (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587852 6yrj:E (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587853 6yrj:F (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    587854 6yrm:A (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587855 6yrm:B (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587856 6yrm:C (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587857 6yrm:D (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587858 6yrm:E (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587859 6yrp:A (1.95) BS01 ZN 3.5.2.6 GO:0046872 ... B8QIQ9 32937203
    587860 6yrp:A (1.95) BS02 ZN 3.5.2.6 GO:0046872 ... B8QIQ9 32937203
    587861 6yrp:A (1.95) BS03 PJB 3.5.2.6 GO:0046872 ... B8QIQ9 32937203 MOAD: Kd=389nM
    587862 6yrq:A (1.902) BS01 rna ? N/A Q9E006 32937107
    587863 6yrq:A (1.902) BS02 rna ? N/A Q9E006 32937107
    587864 6yrq:B (1.902) BS01 rna ? N/A Q9E006 32937107
    587865 6yrq:B (1.902) BS02 rna ? N/A Q9E006 32937107
    587866 6yrq:C (1.902) BS01 rna ? N/A Q9E006 32937107
    587867 6yrq:C (1.902) BS02 rna ? N/A Q9E006 32937107
    587868 6yrq:D (1.902) BS01 rna ? N/A Q9E006 32937107
    587869 6yrq:D (1.902) BS02 rna ? N/A Q9E006 32937107
    587870 6yrt:A (1.65) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587871 6yrt:B (1.65) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587872 6yrt:C (1.65) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587873 6yrt:D (1.65) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587874 6yrt:E (1.65) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587875 6yru:AAA (1.78) BS01 FAD 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587876 6yrv:AAA (1.94) BS01 FAD 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587877 6yrv:AAA (1.94) BS02 PJ8 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587878 6yrv:AAA (1.94) BS03 CO2 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587879 6yrw:A (2.5) BS01 PLP 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587880 6yrw:A (2.5) BS02 DSN 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587881 6yrw:B (2.5) BS01 PLP 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587882 6yrw:B (2.5) BS02 DSN 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587883 6yrw:C (2.5) BS01 PLP 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587884 6yrw:C (2.5) BS02 DSN 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587885 6yrw:D (2.5) BS01 PLP 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587886 6yrw:D (2.5) BS02 DSN 2.1.2.1 GO:0004372 ... Q5M0B4 N/A
    587887 6yrx:AAA (1.87) BS01 FAD 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587888 6yry:A (1.82) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    587889 6yrz:AAA (1.824) BS01 FAD 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587890 6yrz:AAA (1.824) BS02 PJ8 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587891 6yrz:AAA (1.824) BS03 CO2 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587892 6ys0:A (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587893 6ys0:B (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587894 6ys0:C (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587895 6ys0:D (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587896 6ys0:E (1.7) BS01 F6R 2.2.1.2 GO:0004801 ... Q9HKI3 N/A
    587897 6ys1:AAA (1.64) BS01 FAD 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587898 6ys2:AAA (1.97) BS01 FAD 4.1.1.106 GO:0016614 ... A0A248QE08 33833098
    587899 6ys3:0 (2.58) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    587900 6ys3:1 (2.58) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    587901 6ys3:2 (2.58) BS01 rna ? GO:0000027 ... P0AG51 N/A
    587902 6ys3:3 (2.58) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    587903 6ys3:4 (2.58) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    587904 6ys3:6 (2.58) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    587905 6ys3:7 (2.58) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    587906 6ys3:8 (2.58) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    587907 6ys3:c (2.58) BS01 rna ? GO:0000027 ... P60422 N/A
    587908 6ys3:d (2.58) BS01 rna ? GO:0000027 ... P60438 N/A
    587909 6ys3:e (2.58) BS01 rna ? GO:0001070 ... P60723 N/A
    587910 6ys3:f (2.58) BS01 rna ? GO:0000027 ... P62399 N/A
    587911 6ys3:f (2.58) BS02 rna ? GO:0000027 ... P62399 N/A
    587912 6ys3:f (2.58) BS03 rna ? GO:0000027 ... P62399 N/A
    587913 6ys3:g (2.58) BS01 rna ? GO:0000027 ... P0AG55 N/A
    587914 6ys3:h (2.58) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    587915 6ys3:j (2.58) BS01 rna ? GO:0002181 ... P0AA10 N/A
    587916 6ys3:k (2.58) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    587917 6ys3:l (2.58) BS01 rna ? GO:0002181 ... P02413 N/A
    587918 6ys3:m (2.58) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    587919 6ys3:m (2.58) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    587920 6ys3:n (2.58) BS01 rna ? GO:0000027 ... P0AG44 N/A
    587921 6ys3:o (2.58) BS01 rna ? GO:0003735 ... P0ADY7 N/A
    587922 6ys3:o (2.58) BS02 rna ? GO:0003735 ... P0ADY7 N/A
    587923 6ys3:p (2.58) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    587924 6ys3:q (2.58) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    587925 6ys3:r (2.58) BS01 rna ? GO:0002181 ... P0AG48 N/A
    587926 6ys3:s (2.58) BS01 rna ? GO:0002181 ... P61175 N/A
    587927 6ys3:t (2.58) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    587928 6ys3:u (2.58) BS01 rna ? GO:0000027 ... P60624 N/A
    587929 6ys3:w (2.58) BS01 rna ? GO:0000027 ... P68919 N/A
    587930 6ys3:y (2.58) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    587931 6ys3:y (2.58) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    587932 6ys3:z (2.58) BS01 rna ? N/A P02526 N/A
    587933 6ys4:B (2.11) BS01 GLY ? N/A Q6UVJ0 35240058
    587934 6ys4:C (2.11) BS01 GLY ? N/A Q6UVJ0 35240058
    587935 6ys4:C (2.11) BS02 GLY ? N/A Q6UVJ0 35240058
    587936 6ys4:C (2.11) BS03 GLY ? N/A Q6UVJ0 35240058
    587937 6ys5:d (3.0) BS01 rna ? GO:0003676 ... D0CD03 32857965
    587938 6ys5:h (3.0) BS01 rna ? GO:0000049 ... D0C9P7 32857965
    587939 6ys5:j (3.0) BS01 rna ? GO:0003723 ... D0CG36 32857965
    587940 6ys5:j (3.0) BS02 rna ? GO:0003723 ... D0CG36 32857965
    587941 6ys5:k (3.0) BS01 rna ? GO:0000049 ... D0CCZ6 32857965
    587942 6ys5:n (3.0) BS01 rna ? GO:0000049 ... D0CD19 32857965
    587943 6ys5:n (3.0) BS02 MG ? GO:0000049 ... D0CD19 32857965
    587944 6ys5:o (3.0) BS01 rna ? GO:0003735 ... D0CD10 32857965
    587945 6ys5:t (3.0) BS01 rna ? GO:0000028 ... D0CD01 32857965
    587946 6ys6:B (1.55) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    587947 6ys6:C (1.55) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    587948 6ysc:A (2.05) BS01 BMA ? N/A P0DOX5 33009381
    587949 6ysc:A (2.05) BS02 GAL ? N/A P0DOX5 33009381
    587950 6ysc:B (2.05) BS01 BMA ? N/A P0DOX5 33009381
    587951 6ysc:B (2.05) BS02 MAN ? N/A P0DOX5 33009381
    587952 6ysc:B (2.05) BS03 GAL ? N/A P0DOX5 33009381
    587953 6ysc:B (2.05) BS04 FUC ? N/A P0DOX5 33009381
    587954 6ysf:B (3.4) BS01 peptide ? GO:0005886 ... A0A1V9IL35 32929189
    587955 6ysf:D (3.4) BS01 peptide N/A GO:0006935 ... N/A 32929189
    587956 6ysf:E (3.4) BS01 peptide N/A GO:0006935 ... N/A 32929189
    587957 6ysi:A (2.5) BS01 rna ? GO:0002181 ... D0CD00 32857965
    587958 6ysi:B (2.5) BS01 rna ? GO:0003735 ... D0CCZ7 32857965
    587959 6ysi:C (2.5) BS01 rna ? GO:0003735 ... D0CCZ8 32857965
    587960 6ysi:D (2.5) BS01 rna ? GO:0000049 ... D0CD09 32857965
    587961 6ysi:D (2.5) BS02 rna ? GO:0000049 ... D0CD09 32857965
    587962 6ysi:E (2.5) BS01 rna ? GO:0002181 ... D0CD12 32857965
    587963 6ysi:F (2.5) BS01 rna ? GO:0003729 ... D0CG35 32857965
    587964 6ysi:G (2.5) BS01 rna ? GO:0003735 ... D0CD07 32857965
    587965 6ysi:H (2.5) BS01 rna ? GO:0003735 ... D0CD16 32857965
    587966 6ysi:I (2.5) BS01 rna ? GO:0000049 ... D0CD04 32857965
    587967 6ysi:I (2.5) BS02 rna ? GO:0000049 ... D0CD04 32857965
    587968 6ysi:J (2.5) BS01 rna ? GO:0003735 ... D0CD23 32857965
    587969 6ysi:K (2.5) BS01 rna ? GO:0003735 ... D0CD13 32857965
    587970 6ysi:K (2.5) BS02 rna ? GO:0003735 ... D0CD13 32857965
    587971 6ysi:L (2.5) BS01 rna ? GO:0003735 ... D0CCR8 32857965
    587972 6ysi:M (2.5) BS01 rna ? GO:0000027 ... D0CA76 32857965
    587973 6ysi:N (2.5) BS01 rna ? GO:0003723 ... D0CDQ6 32857965
    587974 6ysi:O (2.5) BS01 rna ? GO:0003735 ... D0CD02 32857965
    587975 6ysi:P (2.5) BS01 rna ? GO:0003735 ... D0CCZ9 32857965
    587976 6ysi:Q (2.5) BS01 rna ? GO:0003723 ... D0CD08 32857965
    587977 6ysi:R (2.5) BS01 rna ? GO:0003723 ... D0C9L7 32857965
    587978 6ysi:R (2.5) BS02 rna ? GO:0003723 ... D0C9L7 32857965
    587979 6ysi:S (2.5) BS01 rna ? GO:0003735 ... D0CDQ7 32857965
    587980 6ysi:S (2.5) BS02 rna ? GO:0003735 ... D0CDQ7 32857965
    587981 6ysi:T (2.5) BS01 rna ? GO:0003735 ... D0CAL0 32857965
    587982 6ysi:U (2.5) BS01 rna ? GO:0003735 ... D0CD05 32857965
    587983 6ysi:V (2.5) BS01 rna ? GO:0003735 ... D0CD15 32857965
    587984 6ysi:V (2.5) BS02 rna ? GO:0003735 ... D0CD15 32857965
    587985 6ysi:W (2.5) BS01 rna ? GO:0003735 ... D0CBZ8 32857965
    587986 6ysi:X (2.5) BS01 rna ? GO:0003735 ... D0C9K5 32857965
    587987 6ysi:Y (2.5) BS01 rna ? GO:0003735 ... D0CAL1 32857965
    587988 6ysi:Z (2.5) BS01 rna ? GO:0003735 ... D0CG06 32857965
    587989 6ysi:a (2.5) BS01 rna ? GO:0003735 ... D0CA77 32857965
    587990 6ysi:b (2.5) BS01 rna ? GO:0003735 ... D0CD18 32857965
    587991 6ysi:b (2.5) BS02 ZN ? GO:0003735 ... D0CD18 32857965
    587992 6ysj:H (1.45) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587993 6ysj:H (1.45) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    587994 6ysj:H (1.45) BS03 47A 3.4.21.5 GO:0004252 ... P00734 N/A
    587995 6ysj:H (1.45) BS04 47A 3.4.21.5 GO:0004252 ... P00734 N/A
    587996 6ysk:A (1.21) BS01 PJK 3.1.1.98 GO:0016787 ... Q6P988 32787107 MOAD: ic50=0.11uM
    BindingDB: IC50=200nM
    587997 6ysl:C (3.5) BS01 peptide ? GO:0005886 ... P28611 32929189
    587998 6ysl:D (3.5) BS01 peptide ? GO:0005886 ... P28611 32929189
    587999 6ysl:E (3.5) BS01 peptide ? GO:0005886 ... P28611 32929189
    588000 6ysl:F (3.5) BS01 peptide ? GO:0005886 ... P28611 32929189

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).