SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    588001 6ysl:G (3.5) BS01 peptide ? GO:0005886 ... P28611 32929189
    588002 6ysn:A (3.0) BS01 PJQ ? GO:0005216 ... P0AEX9
    Q9UL62
    33230284
    588003 6ysn:B (3.0) BS01 PJQ ? GO:0005216 ... P0AEX9
    Q9UL62
    33230284
    588004 6ysn:C (3.0) BS01 PJQ ? GO:0005216 ... P0AEX9
    Q9UL62
    33230284
    588005 6ysn:D (3.0) BS01 PJQ ? GO:0005216 ... P0AEX9
    Q9UL62
    33230284
    588006 6yso:A (3.13) BS01 128 7.2.2.10 GO:0000166 ... P04191 33209320
    588007 6yso:A (3.13) BS02 VN4 7.2.2.10 GO:0000166 ... P04191 33209320
    588008 6yso:A (3.13) BS03 MG 7.2.2.10 GO:0000166 ... P04191 33209320
    588009 6yso:B (3.13) BS01 128 7.2.2.10 GO:0000166 ... P04191 33209320
    588010 6yso:B (3.13) BS02 VN4 7.2.2.10 GO:0000166 ... P04191 33209320
    588011 6yso:B (3.13) BS03 MG 7.2.2.10 GO:0000166 ... P04191 33209320
    588012 6ysp:A (1.38) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    588013 6ysp:B (1.38) BS01 CP 2.1.3.2 GO:0004070 ... P49077 33574254
    588014 6ysp:B (1.38) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    588015 6ysp:C (1.38) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    588016 6ysr:0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    588017 6ysr:1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    588018 6ysr:2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    588019 6ysr:3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    588020 6ysr:4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    588021 6ysr:4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    588022 6ysr:5 (3.1) BS01 rna N/A GO:0003735 ... N/A 32796827
    588023 6ysr:6 (3.1) BS01 rna N/A GO:0003735 ... N/A 32796827
    588024 6ysr:6 (3.1) BS02 ZN N/A GO:0003735 ... N/A 32796827
    588025 6ysr:C (3.1) BS01 rna ? GO:0000027 ... P60422 32796827
    588026 6ysr:C (3.1) BS02 rna ? GO:0000027 ... P60422 32796827
    588027 6ysr:D (3.1) BS01 rna ? GO:0000027 ... P60438 32796827
    588028 6ysr:E (3.1) BS01 rna ? GO:0001070 ... P60723 32796827
    588029 6ysr:F (3.1) BS01 rna ? GO:0000027 ... P62399 32796827
    588030 6ysr:F (3.1) BS02 rna ? GO:0000027 ... P62399 32796827
    588031 6ysr:F (3.1) BS03 rna ? GO:0000027 ... P62399 32796827
    588032 6ysr:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 32796827
    588033 6ysr:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    588034 6ysr:I (3.1) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    588035 6ysr:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 32796827
    588036 6ysr:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    588037 6ysr:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    588038 6ysr:L (3.1) BS01 rna ? GO:0002181 ... P02413 32796827
    588039 6ysr:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    588040 6ysr:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    588041 6ysr:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 32796827
    588042 6ysr:O (3.1) BS01 rna ? GO:0002181 ... P0C018 32796827
    588043 6ysr:O (3.1) BS02 rna ? GO:0002181 ... P0C018 32796827
    588044 6ysr:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    588045 6ysr:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    588046 6ysr:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    588047 6ysr:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 32796827
    588048 6ysr:S (3.1) BS01 rna ? GO:0002181 ... P61175 32796827
    588049 6ysr:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    588050 6ysr:U (3.1) BS01 rna ? GO:0000027 ... P60624 32796827
    588051 6ysr:V (3.1) BS01 rna ? GO:0000027 ... P68919 32796827
    588052 6ysr:W (3.1) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    588053 6ysr:W (3.1) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    588054 6ysr:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 32796827
    588055 6ysr:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    588056 6ysr:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 32796827
    588057 6ysr:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 32796827
    588058 6ysr:b (3.1) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    588059 6ysr:c (3.1) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    588060 6ysr:c (3.1) BS02 rna ? GO:0000028 ... C3SQX2 32796827
    588061 6ysr:d (3.1) BS01 rna ? GO:0003723 ... C3SR62 32796827
    588062 6ysr:e (3.1) BS01 rna ? GO:0000028 ... C3SR27 32796827
    588063 6ysr:f (3.1) BS01 rna N/A GO:0003735 ... N/A 32796827
    588064 6ysr:g (3.1) BS01 rna N/A GO:0003723 ... N/A 32796827
    588065 6ysr:g (3.1) BS02 MG N/A GO:0003723 ... N/A 32796827
    588066 6ysr:h (3.1) BS01 rna ? GO:0000028 ... C3SR12 32796827
    588067 6ysr:i (3.1) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    588068 6ysr:i (3.1) BS02 rna ? GO:0000028 ... C3SRY2 32796827
    588069 6ysr:j (3.1) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    588070 6ysr:k (3.1) BS01 rna ? GO:0000028 ... C3SR57 32796827
    588071 6ysr:l (3.1) BS01 rna ? GO:0000028 ... C3SQR7 32796827
    588072 6ysr:m (3.1) BS01 rna ? GO:0000028 ... C3SR52 32796827
    588073 6ysr:n (3.1) BS01 rna ? GO:0003735 ... C3SR07 32796827
    588074 6ysr:o (3.1) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    588075 6ysr:o (3.1) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    588076 6ysr:p (3.1) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    588077 6ysr:q (3.1) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    588078 6ysr:r (3.1) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    588079 6ysr:s (3.1) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    588080 6ysr:t (3.1) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    588081 6ysr:u (3.1) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    588082 6yss:0 (2.6) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    588083 6yss:1 (2.6) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    588084 6yss:2 (2.6) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    588085 6yss:3 (2.6) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    588086 6yss:4 (2.6) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    588087 6yss:4 (2.6) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    588088 6yss:5 (2.6) BS01 rna N/A GO:0003735 ... N/A 32796827
    588089 6yss:6 (2.6) BS01 rna N/A GO:0003735 ... N/A 32796827
    588090 6yss:6 (2.6) BS02 rna N/A GO:0003735 ... N/A 32796827
    588091 6yss:6 (2.6) BS03 ZN N/A GO:0003735 ... N/A 32796827
    588092 6yss:C (2.6) BS01 rna ? GO:0000027 ... P60422 32796827
    588093 6yss:C (2.6) BS02 rna ? GO:0000027 ... P60422 32796827
    588094 6yss:C (2.6) BS03 MG ? GO:0000027 ... P60422 32796827
    588095 6yss:C (2.6) BS04 MG ? GO:0000027 ... P60422 32796827
    588096 6yss:D (2.6) BS01 rna ? GO:0000027 ... P60438 32796827
    588097 6yss:E (2.6) BS01 rna ? GO:0001070 ... P60723 32796827
    588098 6yss:E (2.6) BS02 peptide ? GO:0001070 ... P60723 32796827
    588099 6yss:F (2.6) BS01 rna ? GO:0000027 ... P62399 32796827
    588100 6yss:F (2.6) BS02 rna ? GO:0000027 ... P62399 32796827
    588101 6yss:F (2.6) BS03 rna ? GO:0000027 ... P62399 32796827
    588102 6yss:G (2.6) BS01 rna ? GO:0000027 ... P0AG55 32796827
    588103 6yss:H (2.6) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    588104 6yss:I (2.6) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    588105 6yss:J (2.6) BS01 rna ? GO:0002181 ... P0AA10 32796827
    588106 6yss:K (2.6) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    588107 6yss:K (2.6) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    588108 6yss:L (2.6) BS01 rna ? GO:0002181 ... P02413 32796827
    588109 6yss:M (2.6) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    588110 6yss:M (2.6) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    588111 6yss:M (2.6) BS03 MG ? GO:0000027 ... P0ADY7 32796827
    588112 6yss:N (2.6) BS01 rna ? GO:0000027 ... P0AG44 32796827
    588113 6yss:O (2.6) BS01 rna ? GO:0002181 ... P0C018 32796827
    588114 6yss:O (2.6) BS02 rna ? GO:0002181 ... P0C018 32796827
    588115 6yss:P (2.6) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    588116 6yss:P (2.6) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    588117 6yss:Q (2.6) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    588118 6yss:R (2.6) BS01 rna ? GO:0002181 ... P0AG48 32796827
    588119 6yss:S (2.6) BS01 rna ? GO:0002181 ... P61175 32796827
    588120 6yss:T (2.6) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    588121 6yss:U (2.6) BS01 rna ? GO:0000027 ... P60624 32796827
    588122 6yss:V (2.6) BS01 rna ? GO:0000027 ... P68919 32796827
    588123 6yss:W (2.6) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    588124 6yss:W (2.6) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    588125 6yss:X (2.6) BS01 rna ? GO:0000027 ... P0A7M2 32796827
    588126 6yss:Y (2.6) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    588127 6yss:Z (2.6) BS01 rna ? GO:0000027 ... P0AG51 32796827
    588128 6yss:Z (2.6) BS02 rna ? GO:0000027 ... P0AG51 32796827
    588129 6yss:b (2.6) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    588130 6yss:c (2.6) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    588131 6yss:d (2.6) BS01 rna ? GO:0003723 ... C3SR62 32796827
    588132 6yss:e (2.6) BS01 rna ? GO:0000028 ... C3SR27 32796827
    588133 6yss:f (2.6) BS01 rna N/A GO:0003735 ... N/A 32796827
    588134 6yss:g (2.6) BS01 rna N/A GO:0003723 ... N/A 32796827
    588135 6yss:h (2.6) BS01 rna ? GO:0000028 ... C3SR12 32796827
    588136 6yss:i (2.6) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    588137 6yss:i (2.6) BS02 rna ? GO:0000028 ... C3SRY2 32796827
    588138 6yss:j (2.6) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    588139 6yss:k (2.6) BS01 rna ? GO:0000028 ... C3SR57 32796827
    588140 6yss:l (2.6) BS01 rna N/A GO:0003735 ... N/A 32796827
    588141 6yss:m (2.6) BS01 rna ? GO:0000028 ... C3SR52 32796827
    588142 6yss:m (2.6) BS02 rna ? GO:0000028 ... C3SR52 32796827
    588143 6yss:m (2.6) BS03 MG ? GO:0000028 ... C3SR52 32796827
    588144 6yss:n (2.6) BS01 rna N/A GO:0003735 ... N/A 32796827
    588145 6yss:n (2.6) BS02 MG N/A GO:0003735 ... N/A 32796827
    588146 6yss:o (2.6) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    588147 6yss:o (2.6) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    588148 6yss:p (2.6) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    588149 6yss:q (2.6) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    588150 6yss:r (2.6) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    588151 6yss:s (2.6) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    588152 6yss:t (2.6) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    588153 6yss:u (2.6) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    588154 6yss:y (2.6) BS01 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588155 6yss:y (2.6) BS02 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588156 6yss:y (2.6) BS03 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588157 6yst:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    588158 6yst:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    588159 6yst:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    588160 6yst:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    588161 6yst:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    588162 6yst:4 (3.2) BS02 MG ? GO:0002181 ... P0A7Q6 32796827
    588163 6yst:4 (3.2) BS03 ZN ? GO:0002181 ... P0A7Q6 32796827
    588164 6yst:5 (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    588165 6yst:6 (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    588166 6yst:6 (3.2) BS02 MG N/A GO:0003735 ... N/A 32796827
    588167 6yst:6 (3.2) BS03 ZN N/A GO:0003735 ... N/A 32796827
    588168 6yst:C (3.2) BS01 rna ? GO:0000027 ... P60422 32796827
    588169 6yst:C (3.2) BS02 rna ? GO:0000027 ... P60422 32796827
    588170 6yst:D (3.2) BS01 rna ? GO:0000027 ... P60438 32796827
    588171 6yst:E (3.2) BS01 rna ? GO:0001070 ... P60723 32796827
    588172 6yst:E (3.2) BS02 peptide ? GO:0001070 ... P60723 32796827
    588173 6yst:F (3.2) BS01 rna ? GO:0000027 ... P62399 32796827
    588174 6yst:F (3.2) BS02 rna ? GO:0000027 ... P62399 32796827
    588175 6yst:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 32796827
    588176 6yst:H (3.2) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    588177 6yst:I (3.2) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    588178 6yst:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 32796827
    588179 6yst:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    588180 6yst:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    588181 6yst:L (3.2) BS01 rna ? GO:0002181 ... P02413 32796827
    588182 6yst:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    588183 6yst:M (3.2) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    588184 6yst:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 32796827
    588185 6yst:O (3.2) BS01 rna ? GO:0002181 ... P0C018 32796827
    588186 6yst:O (3.2) BS02 rna ? GO:0002181 ... P0C018 32796827
    588187 6yst:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    588188 6yst:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    588189 6yst:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    588190 6yst:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 32796827
    588191 6yst:S (3.2) BS01 rna ? GO:0002181 ... P61175 32796827
    588192 6yst:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    588193 6yst:U (3.2) BS01 rna ? GO:0000027 ... P60624 32796827
    588194 6yst:V (3.2) BS01 rna ? GO:0000027 ... P68919 32796827
    588195 6yst:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    588196 6yst:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    588197 6yst:X (3.2) BS01 rna ? GO:0003735 ... A0A0H3ENK5 32796827
    588198 6yst:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    588199 6yst:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 32796827
    588200 6yst:Z (3.2) BS02 rna ? GO:0000027 ... P0AG51 32796827

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).