SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    588201 6yst:b (3.2) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    588202 6yst:c (3.2) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    588203 6yst:d (3.2) BS01 rna ? GO:0003723 ... C3SR62 32796827
    588204 6yst:e (3.2) BS01 rna ? GO:0000028 ... C3SR27 32796827
    588205 6yst:f (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    588206 6yst:g (3.2) BS01 rna N/A GO:0003723 ... N/A 32796827
    588207 6yst:h (3.2) BS01 rna ? GO:0000028 ... C3SR12 32796827
    588208 6yst:i (3.2) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    588209 6yst:i (3.2) BS02 rna ? GO:0000028 ... C3SRY2 32796827
    588210 6yst:j (3.2) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    588211 6yst:k (3.2) BS01 rna ? GO:0000028 ... C3SR57 32796827
    588212 6yst:l (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    588213 6yst:m (3.2) BS01 rna ? GO:0000028 ... C3SR52 32796827
    588214 6yst:n (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    588215 6yst:o (3.2) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    588216 6yst:o (3.2) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    588217 6yst:p (3.2) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    588218 6yst:q (3.2) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    588219 6yst:r (3.2) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    588220 6yst:s (3.2) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    588221 6yst:s (3.2) BS02 rna ? GO:0000028 ... C3SQW2 32796827
    588222 6yst:t (3.2) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    588223 6yst:u (3.2) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    588224 6yst:y (3.2) BS01 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588225 6yst:y (3.2) BS02 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588226 6yst:y (3.2) BS03 peptide 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588227 6ysu:0 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    588228 6ysu:1 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    588229 6ysu:2 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    588230 6ysu:3 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    588231 6ysu:4 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    588232 6ysu:4 (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    588233 6ysu:5 (3.7) BS01 rna N/A GO:0003735 ... N/A 32796827
    588234 6ysu:C (3.7) BS01 rna ? GO:0000027 ... P60422 32796827
    588235 6ysu:C (3.7) BS02 rna ? GO:0000027 ... P60422 32796827
    588236 6ysu:C (3.7) BS03 MG ? GO:0000027 ... P60422 32796827
    588237 6ysu:D (3.7) BS01 rna ? GO:0000027 ... P60438 32796827
    588238 6ysu:E (3.7) BS01 rna ? GO:0001070 ... P60723 32796827
    588239 6ysu:F (3.7) BS01 rna ? GO:0000027 ... P62399 32796827
    588240 6ysu:F (3.7) BS02 rna ? GO:0000027 ... P62399 32796827
    588241 6ysu:F (3.7) BS03 rna ? GO:0000027 ... P62399 32796827
    588242 6ysu:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 32796827
    588243 6ysu:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    588244 6ysu:I (3.7) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    588245 6ysu:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 32796827
    588246 6ysu:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    588247 6ysu:K (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    588248 6ysu:L (3.7) BS01 rna ? GO:0002181 ... P02413 32796827
    588249 6ysu:M (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    588250 6ysu:M (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    588251 6ysu:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 32796827
    588252 6ysu:O (3.7) BS01 rna ? GO:0002181 ... P0C018 32796827
    588253 6ysu:O (3.7) BS02 rna ? GO:0002181 ... P0C018 32796827
    588254 6ysu:P (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    588255 6ysu:P (3.7) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    588256 6ysu:Q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    588257 6ysu:R (3.7) BS01 rna ? GO:0002181 ... P0AG48 32796827
    588258 6ysu:S (3.7) BS01 rna ? GO:0002181 ... P61175 32796827
    588259 6ysu:T (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    588260 6ysu:U (3.7) BS01 rna ? GO:0000027 ... P60624 32796827
    588261 6ysu:V (3.7) BS01 rna ? GO:0000027 ... P68919 32796827
    588262 6ysu:W (3.7) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    588263 6ysu:W (3.7) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    588264 6ysu:X (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32796827
    588265 6ysu:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    588266 6ysu:Z (3.7) BS01 rna ? GO:0000027 ... P0AG51 32796827
    588267 6ysu:b (3.7) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    588268 6ysu:c (3.7) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    588269 6ysu:d (3.7) BS01 rna ? GO:0003723 ... C3SR62 32796827
    588270 6ysu:e (3.7) BS01 rna ? GO:0000028 ... C3SR27 32796827
    588271 6ysu:f (3.7) BS01 rna N/A GO:0003735 ... N/A 32796827
    588272 6ysu:g (3.7) BS01 rna N/A GO:0003723 ... N/A 32796827
    588273 6ysu:h (3.7) BS01 rna ? GO:0000028 ... C3SR12 32796827
    588274 6ysu:i (3.7) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    588275 6ysu:j (3.7) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    588276 6ysu:k (3.7) BS01 rna ? GO:0000028 ... C3SR57 32796827
    588277 6ysu:l (3.7) BS01 rna ? GO:0000028 ... C3SQR7 32796827
    588278 6ysu:m (3.7) BS01 rna ? GO:0000028 ... C3SR52 32796827
    588279 6ysu:m (3.7) BS02 rna ? GO:0000028 ... C3SR52 32796827
    588280 6ysu:m (3.7) BS03 MG ? GO:0000028 ... C3SR52 32796827
    588281 6ysu:n (3.7) BS01 rna ? GO:0003735 ... C3SR07 32796827
    588282 6ysu:o (3.7) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    588283 6ysu:o (3.7) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    588284 6ysu:p (3.7) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    588285 6ysu:q (3.7) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    588286 6ysu:r (3.7) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    588287 6ysu:s (3.7) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    588288 6ysu:t (3.7) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    588289 6ysu:u (3.7) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    588290 6ysu:y (3.7) BS01 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588291 6ysu:y (3.7) BS02 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588292 6ysu:y (3.7) BS03 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    588293 6ysw:A (2.82) BS01 COA 1.1.1.35
    4.2.1.17
    5.1.2.3
    GO:0003857 ... P77399 N/A
    588294 6ysx:H (1.48) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    588295 6ysx:H (1.48) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    588296 6ysx:H (1.48) BS03 08D 3.4.21.5 GO:0004252 ... P00734 N/A
    588297 6ysy:A (3.246) BS01 ADP ? GO:0000146 ... Q28641 33035452
    588298 6ysy:A (3.246) BS02 MG ? GO:0000146 ... Q28641 33035452
    588299 6ysy:A (3.246) BS03 PJT ? GO:0000146 ... Q28641 33035452
    588300 6yt1:A (1.9) BS01 PK5 2.7.4.9 GO:0000287 ... P9WKE1 32823003 MOAD: ic50=47uM
    588301 6yt1:B (1.9) BS01 PK5 2.7.4.9 GO:0000287 ... P9WKE1 32823003 MOAD: ic50=47uM
    588302 6yt2:A (1.8) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 32459875
    588303 6yt2:A (1.8) BS02 PJW 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 32459875 MOAD: Ki=0.31uM
    588304 6yt2:A (1.8) BS03 C15 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 32459875
    588305 6yt2:B (1.8) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 32459875
    588306 6yt2:B (1.8) BS02 PJW 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 32459875 MOAD: Ki=0.31uM
    588307 6yt2:B (1.8) BS03 C15 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 32459875
    588308 6yt3:A (2.85) BS01 ATP ? GO:0005737 ... P84308 34587504
    588309 6yt3:A (2.85) BS02 MG ? GO:0005737 ... P84308 34587504
    588310 6yt3:B (2.85) BS01 ATP ? GO:0005737 ... P84253 34587504
    588311 6yt4:A (2.4) BS01 RET ? GO:0016020 ... N0DKS8 N/A
    588312 6yt4:B (2.4) BS01 RET ? GO:0016020 ... N0DKS8 N/A
    588313 6yt4:C (2.4) BS01 RET ? GO:0016020 ... N0DKS8 N/A
    588314 6yt4:D (2.4) BS01 RET ? GO:0016020 ... N0DKS8 N/A
    588315 6yt4:E (2.4) BS01 RET ? GO:0016020 ... N0DKS8 N/A
    588316 6yt6:A (1.537) BS01 PKE 2.7.10.2 GO:0004672 ... Q05397 33497606
    588317 6yt6:B (1.537) BS01 PKE 2.7.10.2 GO:0004672 ... Q05397 33497606
    588318 6yt7:A (1.55) BS01 BMA ? N/A P0DOX5 33009381
    588319 6yt7:A (1.55) BS02 GAL ? N/A P0DOX5 33009381
    588320 6yt7:B (1.55) BS01 GAL ? N/A P01857 33009381
    588321 6yt7:B (1.55) BS02 FUC ? N/A P01857 33009381
    588322 6yt9:c (2.7) BS01 rna ? GO:0003735 ... D0CC74 32857965
    588323 6yt9:e (2.7) BS01 rna ? GO:0003723 ... D0CD21 32857965
    588324 6yt9:f (2.7) BS01 rna ? GO:0003723 ... D0CD14 32857965
    588325 6yt9:f (2.7) BS02 rna ? GO:0003723 ... D0CD14 32857965
    588326 6yt9:g (2.7) BS01 rna ? GO:0003735 ... D0C5Z0 32857965
    588327 6yt9:i (2.7) BS01 rna ? GO:0003735 ... D0CD11 32857965
    588328 6yt9:l (2.7) BS01 rna ? GO:0003735 ... D0CD20 32857965
    588329 6yt9:l (2.7) BS02 rna ? GO:0003735 ... D0CD20 32857965
    588330 6yt9:m (2.7) BS01 rna ? GO:0000049 ... D0C9P6 32857965
    588331 6yt9:p (2.7) BS01 rna ? GO:0003735 ... D0CAU9 32857965
    588332 6yt9:q (2.7) BS01 rna ? GO:0003735 ... D0CCR5 32857965
    588333 6yt9:r (2.7) BS01 rna ? GO:0003735 ... D0CD06 32857965
    588334 6yt9:s (2.7) BS01 rna ? GO:0003735 ... D0C5Y9 32857965
    588335 6yt9:u (2.7) BS01 rna ? GO:0003723 ... D0C7N1 32857965
    588336 6yt9:u (2.7) BS02 rna ? GO:0003723 ... D0C7N1 32857965
    588337 6yt9:v (2.7) BS01 rna ? GO:0003735 ... D0C5Q3 32857965
    588338 6yt9:v (2.7) BS02 rna ? GO:0003735 ... D0C5Q3 32857965
    588339 6yta:A (2.3) BS01 IYZ 2.7.12.1 GO:0004672 ... P49759 32787076 MOAD: Ki=0.229uM
    588340 6ytb:A (1.65) BS01 GAL ? N/A P0DOX5 33009381
    588341 6ytb:B (1.65) BS01 GAL ? N/A P0DOX5 33009381
    588342 6ytd:A (2.0) BS01 EAE 2.7.12.1 GO:0004672 ... P49759 32787076 MOAD: Ki=0.671uM
    BindingDB: Kd=19nM, IC50=49nM
    588343 6yte:C (2.3) BS01 EAE 2.7.12.1 GO:0004672 ... P49759 32787076 MOAD: Kd=0.075uM
    BindingDB: Kd=19nM, IC50=49nM
    588344 6ytf:d (3.0) BS01 rna ? GO:0003676 ... D0CD03 32857965
    588345 6ytf:h (3.0) BS01 rna ? GO:0000049 ... D0C9P7 32857965
    588346 6ytf:j (3.0) BS01 rna ? GO:0003723 ... D0CG36 32857965
    588347 6ytf:k (3.0) BS01 rna ? GO:0000049 ... D0CCZ6 32857965
    588348 6ytf:n (3.0) BS01 rna ? GO:0000049 ... D0CD19 32857965
    588349 6ytf:n (3.0) BS02 MG ? GO:0000049 ... D0CD19 32857965
    588350 6ytf:o (3.0) BS01 rna ? GO:0003735 ... D0CD10 32857965
    588351 6ytf:t (3.0) BS01 rna ? GO:0000028 ... D0CD01 32857965
    588352 6ytg:A (1.95) BS01 KHC 2.7.12.1 GO:0004672 ... P49759 32787076 MOAD: Ki=0.136uM
    588353 6ytg:A (1.95) BS02 KHC 2.7.12.1 GO:0004672 ... P49759 32787076 MOAD: Ki=0.136uM
    588354 6yti:A (2.4) BS01 7A7 2.7.12.1 GO:0004672 ... P49759 32787076
    588355 6ytm:A (1.56) BS01 PMW ? N/A P25440 32756710 MOAD: Kd=65nM
    588356 6ytm:A (1.56) BS02 PXN ? N/A P25440 32756710
    588357 6ytm:B (1.56) BS01 PMW ? N/A P25440 32756710 MOAD: Kd=65nM
    588358 6ytp:AAA (1.7) BS01 PN8 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0000423 ... P04062 34570911
    588359 6ytp:BBB (1.7) BS01 PN8 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0000423 ... P04062 34570911
    588360 6ytr:AAA (1.7) BS01 PO8 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0000423 ... P04062 34570911
    588361 6ytr:BBB (1.7) BS01 PO8 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0000423 ... P04062 34570911
    588362 6ytt:A (3.01) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588363 6ytt:B (3.01) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588364 6ytt:B (3.01) BS02 SF4 N/A GO:0003824 ... N/A 33080205
    588365 6ytt:B (3.01) BS03 XCC N/A GO:0003824 ... N/A 33080205
    588366 6ytt:C (3.01) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588367 6ytt:C (3.01) BS02 SF4 N/A GO:0003824 ... N/A 33080205
    588368 6ytt:C (3.01) BS03 XCC N/A GO:0003824 ... N/A 33080205
    588369 6ytt:D (3.01) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588370 6ytw:A (2.0) BS01 EAE 2.7.12.1 GO:0004672 ... P49761 32787076 MOAD: Kd=7.78uM
    BindingDB: Kd=3000nM
    588371 6ytw:B (2.0) BS01 EAE 2.7.12.1 GO:0004672 ... P49761 32787076 MOAD: Kd=7.78uM
    BindingDB: Kd=3000nM
    588372 6yty:A (1.76) BS01 EAE 2.7.12.1 GO:0004672 ... P49761 32787076 BindingDB: Kd=3000nM
    588373 6ytz:A (1.4) BS01 NAP N/A GO:0016491 ... N/A 33412202
    588374 6yu1:a (1.9) BS01 KHC 2.7.12.1 GO:0004672 ... P49761 32787076
    588375 6yu1:c (1.9) BS01 KHC 2.7.12.1 GO:0004672 ... P49761 32787076
    588376 6yu2:A (3.1) BS01 ILE ? GO:0016020 ... Q9KDT3 33155685
    588377 6yu2:B (3.1) BS01 ILE ? GO:0016020 ... Q9KDT3 33155685
    588378 6yu3:A (2.25) BS01 PHE ? GO:0016020 ... Q9KDT3 33155685
    588379 6yu4:A (2.26) BS01 PFF ? GO:0016020 ... Q9KDT3 33155685
    588380 6yu5:A (2.6) BS01 VAL ? GO:0016020 ... Q9KDT3 33155685
    588381 6yu5:B (2.6) BS01 VAL ? GO:0016020 ... Q9KDT3 33155685
    588382 6yu6:A (2.35) BS01 LEU ? GO:0016020 ... Q9KDT3 33155685
    588383 6yu6:B (2.35) BS01 LEU ? GO:0016020 ... Q9KDT3 33155685
    588384 6yu7:A (2.3) BS01 TYR ? GO:0016020 ... Q9KDT3 33155685
    588385 6yu8:A (1.841) BS01 MG 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    N/A Q5XX01 33503246
    588386 6yu8:A (1.841) BS02 MG 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    N/A Q5XX01 33503246
    588387 6yu9:A (1.904) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588388 6yu9:A (1.904) BS02 XCC N/A GO:0003824 ... N/A 33080205
    588389 6yu9:A (1.904) BS03 SF4 N/A GO:0003824 ... N/A 33080205
    588390 6yu9:B (1.904) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588391 6yu9:B (1.904) BS02 XCC N/A GO:0003824 ... N/A 33080205
    588392 6yu9:B (1.904) BS03 SF4 N/A GO:0003824 ... N/A 33080205
    588393 6yu9:C (1.904) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588394 6yu9:C (1.904) BS02 SF4 N/A GO:0003824 ... N/A 33080205
    588395 6yu9:C (1.904) BS03 XCC N/A GO:0003824 ... N/A 33080205
    588396 6yu9:D (1.904) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588397 6yu9:D (1.904) BS02 SF4 N/A GO:0003824 ... N/A 33080205
    588398 6yu9:D (1.904) BS03 XCC N/A GO:0003824 ... N/A 33080205
    588399 6yua:B (3.16) BS01 SF4 N/A GO:0003824 ... N/A 33080205
    588400 6yua:B (3.16) BS02 SF4 N/A GO:0003824 ... N/A 33080205

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).