SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    588601 6yw9:B (1.68) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    588602 6yw9:B (1.68) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    588603 6yw9:C (1.68) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    588604 6yw9:C (1.68) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    588605 6ywa:A (2.311) BS01 PWB ? GO:0002218 ... Q86WV6 N/A
    588606 6ywa:B (2.311) BS01 PWB ? GO:0002218 ... Q86WV6 N/A
    588607 6ywb:A (2.503) BS01 PWB ? GO:0002218 ... Q86WV6 N/A
    588608 6ywe:0 (2.99) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    588609 6ywe:0 (2.99) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    588610 6ywe:1 (2.99) BS01 rna N/A N/A N/A 33056988
    588611 6ywe:11 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588612 6ywe:2 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588613 6ywe:2 (2.99) BS02 NAD N/A GO:0003735 ... N/A 33056988
    588614 6ywe:22 (2.99) BS01 rna ? GO:0005739 ... Q7SHR6 33056988
    588615 6ywe:22 (2.99) BS02 rna ? GO:0005739 ... Q7SHR6 33056988
    588616 6ywe:3 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588617 6ywe:33 (2.99) BS01 rna ? N/A Q9HE52 33056988
    588618 6ywe:4 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588619 6ywe:44 (2.99) BS01 rna N/A GO:0004784 ... N/A 33056988
    588620 6ywe:5 (2.99) BS01 rna N/A GO:0003725 ... N/A 33056988
    588621 6ywe:6 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588622 6ywe:66 (2.99) BS01 rna ? GO:0003735 ... Q7SHB2 33056988
    588623 6ywe:7 (2.99) BS01 rna ? GO:0003735 ... Q7S518 33056988
    588624 6ywe:8 (2.99) BS01 rna ? GO:0005739 ... Q7S711 33056988
    588625 6ywe:9 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588626 6ywe:AA (2.99) BS01 rna N/A N/A N/A 33056988
    588627 6ywe:B (2.99) BS01 rna N/A GO:0003723 ... N/A 33056988
    588628 6ywe:BB (2.99) BS01 rna ? GO:0003735 ... V5ILE0 33056988
    588629 6ywe:BB (2.99) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    588630 6ywe:C (2.99) BS01 rna ? GO:0003735 ... Q873B3 33056988
    588631 6ywe:CC (2.99) BS01 rna ? GO:0005739 ... A0A1W5YJW8 33056988
    588632 6ywe:D (2.99) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    588633 6ywe:DD (2.99) BS01 rna N/A GO:0003723 ... N/A 33056988
    588634 6ywe:E (2.99) BS01 rna ? GO:0003735 ... Q96U12 33056988
    588635 6ywe:E (2.99) BS02 NAD ? GO:0003735 ... Q96U12 33056988
    588636 6ywe:EE (2.99) BS01 rna ? GO:0003723 ... Q8X048 33056988
    588637 6ywe:F (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588638 6ywe:FF (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588639 6ywe:G (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588640 6ywe:GG (2.99) BS01 rna N/A GO:0006412 ... N/A 33056988
    588641 6ywe:GG (2.99) BS02 rna N/A GO:0006412 ... N/A 33056988
    588642 6ywe:H (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588643 6ywe:HH (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588644 6ywe:I (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588645 6ywe:I (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    588646 6ywe:II (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588647 6ywe:II (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    588648 6ywe:J (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588649 6ywe:JJ (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588650 6ywe:K (2.99) BS01 rna ? GO:0003735 ... Q8X081 33056988
    588651 6ywe:KK (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588652 6ywe:KK (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    588653 6ywe:L (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588654 6ywe:LL (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588655 6ywe:M (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588656 6ywe:MM (2.99) BS01 rna ? GO:0003676 ... Q6MVY0 33056988
    588657 6ywe:N (2.99) BS01 rna ? GO:0003735 ... Q6MVF2 33056988
    588658 6ywe:NN (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588659 6ywe:O (2.99) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    588660 6ywe:OO (2.99) BS01 rna ? GO:0003735 ... Q8X067 33056988
    588661 6ywe:P (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588662 6ywe:PP (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588663 6ywe:Q (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588664 6ywe:QQ (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588665 6ywe:R (2.99) BS01 rna ? GO:0003735 ... Q8X0Q2 33056988
    588666 6ywe:RR (2.99) BS01 rna ? GO:0003735 ... Q872A7 33056988
    588667 6ywe:S (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588668 6ywe:S (2.99) BS02 MG N/A GO:0003735 ... N/A 33056988
    588669 6ywe:SS (2.99) BS01 rna N/A GO:0003723 ... N/A 33056988
    588670 6ywe:SS (2.99) BS02 rna N/A GO:0003723 ... N/A 33056988
    588671 6ywe:T (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588672 6ywe:TT (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588673 6ywe:TT (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    588674 6ywe:U (2.99) BS01 rna ? GO:0003735 ... Q8X098 33056988
    588675 6ywe:UU (2.99) BS01 rna ? GO:0003735 ... Q873E4 33056988
    588676 6ywe:V (2.99) BS01 rna ? GO:0003735 ... Q9C2E5 33056988
    588677 6ywe:V (2.99) BS02 rna ? GO:0003735 ... Q9C2E5 33056988
    588678 6ywe:VV (2.99) BS01 rna ? GO:0005739 ... Q7SHR9 33056988
    588679 6ywe:W (2.99) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    588680 6ywe:W (2.99) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    588681 6ywe:WW (2.99) BS01 rna ? GO:0005739 ... Q7RYW7 33056988
    588682 6ywe:X (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588683 6ywe:XX (2.99) BS01 rna ? GO:0003735 ... Q7SD06 33056988
    588684 6ywe:XX (2.99) BS02 rna ? GO:0003735 ... Q7SD06 33056988
    588685 6ywe:XX (2.99) BS03 rna ? GO:0003735 ... Q7SD06 33056988
    588686 6ywe:XX (2.99) BS04 ATP ? GO:0003735 ... Q7SD06 33056988
    588687 6ywe:Y (2.99) BS01 rna ? GO:0003735 ... Q96U95 33056988
    588688 6ywe:YY (2.99) BS01 rna N/A N/A N/A 33056988
    588689 6ywe:ZZ (2.99) BS01 rna ? GO:0003735 ... Q9P5J2 33056988
    588690 6ywe:a (2.99) BS01 rna ? GO:0003735 ... Q8NIR6 33056988
    588691 6ywe:b (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588692 6ywe:c (2.99) BS01 rna N/A N/A N/A 33056988
    588693 6ywe:d (2.99) BS01 rna N/A GO:0000002 ... N/A 33056988
    588694 6ywe:e (2.99) BS01 rna ? GO:0003735 ... Q870V5 33056988
    588695 6ywe:f (2.99) BS01 rna ? GO:0005840 ... Q6M9C4 33056988
    588696 6ywe:g (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    588697 6ywe:i (2.99) BS01 rna N/A N/A N/A 33056988
    588698 6ywe:j (2.99) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    588699 6ywg:A (1.45) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588700 6ywg:B (1.45) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588701 6ywg:B (1.45) BS02 FMN 2.7.13.3 N/A B8GAY9 33774867
    588702 6ywh:A (1.07) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588703 6ywh:B (1.07) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588704 6ywi:A (1.13) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588705 6ywi:B (1.13) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588706 6ywi:B (1.13) BS02 FMN 2.7.13.3 N/A B8GAY9 33774867
    588707 6ywj:A (2.4) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    588708 6ywj:B (2.4) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    588709 6ywk:C (2.2) BS01 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588710 6ywk:E (2.2) BS01 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588711 6ywl:A (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588712 6ywl:B (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588713 6ywl:C (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588714 6ywl:C (2.5) BS02 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588715 6ywl:D (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588716 6ywl:E (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588717 6ywl:E (2.5) BS02 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588718 6ywm:B (2.16) BS01 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33850605
    588719 6ywn:A (1.45) BS01 CA ? N/A G2R014 32785623
    588720 6ywn:A (1.45) BS02 2TM ? N/A G2R014 32785623
    588721 6ywo:A (1.9) BS01 rna ? N/A G2R014 32785623
    588722 6ywo:B (1.9) BS01 rna ? N/A G2R014 32785623
    588723 6ywo:C (1.9) BS01 rna ? N/A G2R014 32785623
    588724 6ywo:D (1.9) BS01 rna ? N/A G2R014 32785623
    588725 6ywq:A (1.27) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588726 6ywq:B (1.27) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588727 6ywr:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588728 6ywr:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    588729 6yws:0 (2.74) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    588730 6yws:0 (2.74) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    588731 6yws:1 (2.74) BS01 rna ? GO:0005739 ... Q7RXV8 33056988
    588732 6yws:2 (2.74) BS01 rna N/A GO:0003735 ... N/A 33056988
    588733 6yws:2 (2.74) BS02 NAD N/A GO:0003735 ... N/A 33056988
    588734 6yws:3 (2.74) BS01 rna ? GO:0003735 ... Q7S5W0 33056988
    588735 6yws:4 (2.74) BS01 rna ? GO:0003735 ... Q7S300 33056988
    588736 6yws:5 (2.74) BS01 rna ? GO:0003723 ... Q7SA88 33056988
    588737 6yws:6 (2.74) BS01 rna ? GO:0003735 ... Q7S1Z3 33056988
    588738 6yws:7 (2.74) BS01 rna ? GO:0003735 ... Q7S518 33056988
    588739 6yws:8 (2.74) BS01 rna ? GO:0005739 ... Q7S711 33056988
    588740 6yws:9 (2.74) BS01 rna ? GO:0003735 ... Q7S1R6 33056988
    588741 6yws:B (2.74) BS01 rna ? GO:0003723 ... Q7SCX7 33056988
    588742 6yws:C (2.74) BS01 rna ? GO:0003735 ... Q1K8T6 33056988
    588743 6yws:D (2.74) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    588744 6yws:E (2.74) BS01 rna ? GO:0003723 ... Q1K6P0 33056988
    588745 6yws:E (2.74) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    588746 6yws:F (2.74) BS01 rna ? GO:0003735 ... Q7RZF0 33056988
    588747 6yws:G (2.74) BS01 rna ? GO:0003735 ... Q7S054 33056988
    588748 6yws:H (2.74) BS01 rna ? GO:0003729 ... Q7SBV6 33056988
    588749 6yws:I (2.74) BS01 rna ? GO:0003735 ... Q7SBJ8 33056988
    588750 6yws:J (2.74) BS01 rna N/A GO:0003735 ... N/A 33056988
    588751 6yws:K (2.74) BS01 rna ? GO:0003735 ... F5HIJ5 33056988
    588752 6yws:K (2.74) BS02 MG ? GO:0003735 ... F5HIJ5 33056988
    588753 6yws:L (2.74) BS01 rna ? GO:0003735 ... Q1K8C8 33056988
    588754 6yws:M (2.74) BS01 rna ? GO:0003735 ... Q7RYW8 33056988
    588755 6yws:N (2.74) BS01 rna ? GO:0003735 ... Q7SGE5 33056988
    588756 6yws:O (2.74) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    588757 6yws:P (2.74) BS01 rna ? GO:0003735 ... Q7SA60 33056988
    588758 6yws:Q (2.74) BS01 rna ? GO:0003735 ... Q7RXU7 33056988
    588759 6yws:R (2.74) BS01 rna ? GO:0003735 ... Q1K730 33056988
    588760 6yws:S (2.74) BS01 rna ? GO:0003735 ... Q7SC44 33056988
    588761 6yws:T (2.74) BS01 rna ? GO:0003735 ... Q7S910 33056988
    588762 6yws:U (2.74) BS01 rna ? GO:0003735 ... Q1K8Y7 33056988
    588763 6yws:V (2.74) BS01 rna ? GO:0003735 ... Q1K7L7 33056988
    588764 6yws:W (2.74) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    588765 6yws:W (2.74) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    588766 6yws:X (2.74) BS01 rna ? GO:0003735 ... V5IM60 33056988
    588767 6yws:Y (2.74) BS01 rna ? GO:0003735 ... Q96U95 33056988
    588768 6yws:a (2.74) BS01 rna ? GO:0003735 ... Q1K6U7 33056988
    588769 6yws:b (2.74) BS01 rna N/A GO:0003735 ... N/A 33056988
    588770 6yws:c (2.74) BS01 rna ? GO:0003735 ... U9W8F2 33056988
    588771 6yws:d (2.74) BS01 rna ? GO:0000002 ... Q7RYM5 33056988
    588772 6yws:e (2.74) BS01 rna ? GO:0003735 ... Q1K699 33056988
    588773 6yws:f (2.74) BS01 rna ? GO:0003735 ... Q7RZ62 33056988
    588774 6yws:g (2.74) BS01 rna ? GO:0003735 ... Q7RX40 33056988
    588775 6yws:h (2.74) BS01 rna ? GO:0003735 ... Q7SGH0 33056988
    588776 6yws:i (2.74) BS01 rna ? GO:0003735 ... Q7SCZ3 33056988
    588777 6yws:j (2.74) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    588778 6ywt:A (1.05) BS01 BMP 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    588779 6ywt:A (1.05) BS02 PRO 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    588780 6ywu:A (1.1) BS01 U5P 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    588781 6ywv:0 (3.03) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    588782 6ywv:0 (3.03) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    588783 6ywv:1 (3.03) BS01 rna ? GO:0005739 ... Q7RXV8 33056988
    588784 6ywv:2 (3.03) BS01 rna N/A GO:0003735 ... N/A 33056988
    588785 6ywv:2 (3.03) BS02 NAD N/A GO:0003735 ... N/A 33056988
    588786 6ywv:3 (3.03) BS01 rna ? GO:0003735 ... Q7S5W0 33056988
    588787 6ywv:4 (3.03) BS01 rna ? GO:0003735 ... Q7S300 33056988
    588788 6ywv:5 (3.03) BS01 rna ? GO:0003723 ... Q7SA88 33056988
    588789 6ywv:6 (3.03) BS01 rna ? GO:0003735 ... Q7S1Z3 33056988
    588790 6ywv:7 (3.03) BS01 rna ? GO:0003735 ... Q7S518 33056988
    588791 6ywv:8 (3.03) BS01 rna ? GO:0005739 ... Q7S711 33056988
    588792 6ywv:9 (3.03) BS01 rna ? GO:0003735 ... Q7S1R6 33056988
    588793 6ywv:B (3.03) BS01 rna ? GO:0003723 ... Q7SCX7 33056988
    588794 6ywv:C (3.03) BS01 rna ? GO:0003735 ... Q1K8T6 33056988
    588795 6ywv:D (3.03) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    588796 6ywv:E (3.03) BS01 rna ? GO:0003723 ... Q1K6P0 33056988
    588797 6ywv:E (3.03) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    588798 6ywv:F (3.03) BS01 rna ? GO:0003735 ... Q7RZF0 33056988
    588799 6ywv:H (3.03) BS01 rna ? GO:0003729 ... Q7SBV6 33056988
    588800 6ywv:I (3.03) BS01 rna ? GO:0003735 ... Q7SBJ8 33056988

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).