SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    588801 6ywv:J (3.03) BS01 rna ? GO:0003735 ... Q7SB98 33056988
    588802 6ywv:K (3.03) BS01 rna ? GO:0003735 ... F5HIJ5 33056988
    588803 6ywv:K (3.03) BS02 MG ? GO:0003735 ... F5HIJ5 33056988
    588804 6ywv:L (3.03) BS01 rna ? GO:0003735 ... Q1K8C8 33056988
    588805 6ywv:M (3.03) BS01 rna ? GO:0003735 ... Q7RYW8 33056988
    588806 6ywv:N (3.03) BS01 rna ? GO:0003735 ... Q7SGE5 33056988
    588807 6ywv:O (3.03) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    588808 6ywv:P (3.03) BS01 rna ? GO:0003735 ... Q7SA60 33056988
    588809 6ywv:Q (3.03) BS01 rna ? GO:0003735 ... Q7RXU7 33056988
    588810 6ywv:R (3.03) BS01 rna ? GO:0003735 ... Q1K730 33056988
    588811 6ywv:S (3.03) BS01 rna ? GO:0003735 ... Q7SC44 33056988
    588812 6ywv:T (3.03) BS01 rna ? GO:0003735 ... Q7S910 33056988
    588813 6ywv:U (3.03) BS01 rna ? GO:0003735 ... Q1K8Y7 33056988
    588814 6ywv:V (3.03) BS01 rna ? GO:0003735 ... Q1K7L7 33056988
    588815 6ywv:W (3.03) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    588816 6ywv:W (3.03) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    588817 6ywv:X (3.03) BS01 rna ? GO:0003735 ... V5IM60 33056988
    588818 6ywv:Y (3.03) BS01 rna ? GO:0003735 ... Q1K7P9 33056988
    588819 6ywv:a (3.03) BS01 rna ? GO:0003735 ... Q1K6U7 33056988
    588820 6ywv:b (3.03) BS01 rna ? GO:0003735 ... Q7SEK9 33056988
    588821 6ywv:c (3.03) BS01 rna ? GO:0003735 ... U9W8F2 33056988
    588822 6ywv:d (3.03) BS01 rna ? GO:0000002 ... Q7RYM5 33056988
    588823 6ywv:f (3.03) BS01 rna ? GO:0003735 ... Q7RZ62 33056988
    588824 6ywv:g (3.03) BS01 rna ? GO:0003735 ... Q7RX40 33056988
    588825 6ywv:i (3.03) BS01 rna ? GO:0003735 ... Q7SCZ3 33056988
    588826 6ywv:n (3.03) BS01 rna ? GO:0005739 ... Q7SAC2 33056988
    588827 6yww:A (2.102) BS01 dna ? GO:0003677 ... P51608 34324427
    588828 6yww:A (2.102) BS02 dna ? GO:0003677 ... P51608 34324427
    588829 6ywx:0 (3.1) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    588830 6ywx:0 (3.1) BS02 MG ? GO:0003735 ... Q7S4E7 33056988
    588831 6ywx:0 (3.1) BS03 ZN ? GO:0003735 ... Q7S4E7 33056988
    588832 6ywx:1 (3.1) BS01 rna ? GO:0005739 ... Q7RXV8 33056988
    588833 6ywx:11 (3.1) BS01 rna ? GO:0003735 ... Q7S4Y4 33056988
    588834 6ywx:2 (3.1) BS01 rna N/A GO:0003735 ... N/A 33056988
    588835 6ywx:2 (3.1) BS02 NAD N/A GO:0003735 ... N/A 33056988
    588836 6ywx:22 (3.1) BS01 rna ? GO:0005739 ... Q7SHR6 33056988
    588837 6ywx:22 (3.1) BS02 rna ? GO:0005739 ... Q7SHR6 33056988
    588838 6ywx:3 (3.1) BS01 rna ? GO:0003735 ... Q7S5W0 33056988
    588839 6ywx:33 (3.1) BS01 rna ? GO:0005739 ... Q1K6Q3 33056988
    588840 6ywx:4 (3.1) BS01 rna ? GO:0003735 ... Q7S300 33056988
    588841 6ywx:44 (3.1) BS01 rna ? GO:0004784 ... Q7S2H6 33056988
    588842 6ywx:5 (3.1) BS01 rna ? GO:0003723 ... Q7SA88 33056988
    588843 6ywx:6 (3.1) BS01 rna ? GO:0003735 ... Q7S1Z3 33056988
    588844 6ywx:6 (3.1) BS02 NAD ? GO:0003735 ... Q7S1Z3 33056988
    588845 6ywx:66 (3.1) BS01 rna ? GO:0003735 ... Q7SHB2 33056988
    588846 6ywx:7 (3.1) BS01 rna ? GO:0003735 ... Q7S518 33056988
    588847 6ywx:8 (3.1) BS01 rna ? GO:0005739 ... Q7S711 33056988
    588848 6ywx:9 (3.1) BS01 rna ? GO:0003735 ... Q7S1R6 33056988
    588849 6ywx:AA (3.1) BS01 rna ? GO:0003735 ... A7UWX2 33056988
    588850 6ywx:B (3.1) BS01 rna ? GO:0003723 ... Q7SCX7 33056988
    588851 6ywx:BB (3.1) BS01 rna ? GO:0003735 ... V5ILE0 33056988
    588852 6ywx:BB (3.1) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    588853 6ywx:C (3.1) BS01 rna ? GO:0003735 ... Q1K8T6 33056988
    588854 6ywx:CC (3.1) BS01 rna ? GO:0005739 ... P23351 33056988
    588855 6ywx:D (3.1) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    588856 6ywx:DD (3.1) BS01 rna ? GO:0003723 ... Q7SA90 33056988
    588857 6ywx:E (3.1) BS01 rna ? GO:0003723 ... Q1K6P0 33056988
    588858 6ywx:E (3.1) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    588859 6ywx:EE (3.1) BS01 rna ? GO:0003723 ... Q1K548 33056988
    588860 6ywx:F (3.1) BS01 rna ? GO:0003735 ... Q7RZF0 33056988
    588861 6ywx:FF (3.1) BS01 rna ? GO:0003735 ... Q7SB95 33056988
    588862 6ywx:G (3.1) BS01 rna ? GO:0003735 ... Q7S054 33056988
    588863 6ywx:GG (3.1) BS01 rna ? GO:0000028 ... Q7S6M9 33056988
    588864 6ywx:H (3.1) BS01 rna ? GO:0003729 ... Q7SBV6 33056988
    588865 6ywx:HH (3.1) BS01 rna ? GO:0003735 ... Q7SHF3 33056988
    588866 6ywx:I (3.1) BS01 rna ? GO:0003735 ... Q7SBJ8 33056988
    588867 6ywx:I (3.1) BS02 rna ? GO:0003735 ... Q7SBJ8 33056988
    588868 6ywx:II (3.1) BS01 rna ? GO:0003723 ... Q7S7R6 33056988
    588869 6ywx:J (3.1) BS01 rna ? GO:0003735 ... Q7SB98 33056988
    588870 6ywx:JJ (3.1) BS01 rna ? GO:0003735 ... Q7RYL4 33056988
    588871 6ywx:K (3.1) BS01 rna ? GO:0003735 ... F5HIJ5 33056988
    588872 6ywx:KK (3.1) BS01 rna ? GO:0003735 ... Q7SGU0 33056988
    588873 6ywx:L (3.1) BS01 rna ? GO:0003735 ... Q1K8C8 33056988
    588874 6ywx:LL (3.1) BS01 rna ? GO:0003735 ... Q7S9I4 33056988
    588875 6ywx:M (3.1) BS01 rna ? GO:0003735 ... Q7RYW8 33056988
    588876 6ywx:MM (3.1) BS01 rna ? GO:0003676 ... Q7S2C2 33056988
    588877 6ywx:MM (3.1) BS02 rna ? GO:0003676 ... Q7S2C2 33056988
    588878 6ywx:N (3.1) BS01 rna ? GO:0003735 ... Q7SGE5 33056988
    588879 6ywx:NN (3.1) BS01 rna ? GO:0003735 ... Q7SF85 33056988
    588880 6ywx:O (3.1) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    588881 6ywx:OO (3.1) BS01 rna ? GO:0003735 ... Q1K5G1 33056988
    588882 6ywx:P (3.1) BS01 rna ? GO:0003735 ... Q7SA60 33056988
    588883 6ywx:PP (3.1) BS01 rna ? GO:0003735 ... P08580 33056988
    588884 6ywx:Q (3.1) BS01 rna ? GO:0003735 ... Q7RXU7 33056988
    588885 6ywx:QQ (3.1) BS01 rna ? GO:0003735 ... Q7S4E0 33056988
    588886 6ywx:R (3.1) BS01 rna ? GO:0003735 ... Q1K730 33056988
    588887 6ywx:RR (3.1) BS01 rna ? GO:0003735 ... Q1K8E0 33056988
    588888 6ywx:S (3.1) BS01 rna ? GO:0003735 ... Q7SC44 33056988
    588889 6ywx:SS (3.1) BS01 rna ? GO:0000028 ... Q1K8V2 33056988
    588890 6ywx:T (3.1) BS01 rna ? GO:0003735 ... Q7S910 33056988
    588891 6ywx:TT (3.1) BS01 rna ? GO:0003735 ... Q7SAJ1 33056988
    588892 6ywx:U (3.1) BS01 rna ? GO:0003735 ... Q1K8Y7 33056988
    588893 6ywx:UU (3.1) BS01 rna ? GO:0003735 ... Q873E4 33056988
    588894 6ywx:V (3.1) BS01 rna ? GO:0003735 ... Q1K7L7 33056988
    588895 6ywx:VV (3.1) BS01 rna ? GO:0005739 ... Q7SHR9 33056988
    588896 6ywx:W (3.1) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    588897 6ywx:W (3.1) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    588898 6ywx:WW (3.1) BS01 rna ? GO:0005739 ... Q7RYW7 33056988
    588899 6ywx:X (3.1) BS01 rna ? GO:0003735 ... V5IM60 33056988
    588900 6ywx:XX (3.1) BS01 rna ? GO:0003735 ... Q7SD06 33056988
    588901 6ywx:XX (3.1) BS02 ATP ? GO:0003735 ... Q7SD06 33056988
    588902 6ywx:Y (3.1) BS01 rna ? GO:0003735 ... Q1K7P9 33056988
    588903 6ywx:YY (3.1) BS01 rna ? GO:0005739 ... Q1K5R0 33056988
    588904 6ywx:ZZ (3.1) BS01 rna ? GO:0003735 ... Q1K5Z0 33056988
    588905 6ywx:a (3.1) BS01 rna ? GO:0003735 ... Q1K6U7 33056988
    588906 6ywx:b (3.1) BS01 rna ? GO:0003735 ... Q7SEK9 33056988
    588907 6ywx:c (3.1) BS01 rna ? GO:0003735 ... U9W8F2 33056988
    588908 6ywx:d (3.1) BS01 rna ? GO:0000002 ... Q7RYM5 33056988
    588909 6ywx:e (3.1) BS01 rna ? GO:0003735 ... Q1K699 33056988
    588910 6ywx:e (3.1) BS02 rna ? GO:0003735 ... Q1K699 33056988
    588911 6ywx:f (3.1) BS01 rna ? GO:0003735 ... Q7RZ62 33056988
    588912 6ywx:g (3.1) BS01 rna ? GO:0003735 ... Q7RX40 33056988
    588913 6ywx:i (3.1) BS01 rna ? GO:0003735 ... Q7SCZ3 33056988
    588914 6ywx:j (3.1) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    588915 6ywy:0 (3.05) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    588916 6ywy:0 (3.05) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    588917 6ywy:00 (3.05) BS01 rna N/A GO:0005739 ... N/A 33056988
    588918 6ywy:1 (3.05) BS01 rna N/A N/A N/A 33056988
    588919 6ywy:11 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588920 6ywy:2 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588921 6ywy:2 (3.05) BS02 NAD N/A GO:0003735 ... N/A 33056988
    588922 6ywy:22 (3.05) BS01 rna ? GO:0005739 ... Q7SHR6 33056988
    588923 6ywy:22 (3.05) BS02 rna ? GO:0005739 ... Q7SHR6 33056988
    588924 6ywy:3 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588925 6ywy:33 (3.05) BS01 rna ? N/A Q9HE52 33056988
    588926 6ywy:4 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588927 6ywy:44 (3.05) BS01 rna N/A GO:0004784 ... N/A 33056988
    588928 6ywy:5 (3.05) BS01 rna N/A GO:0003725 ... N/A 33056988
    588929 6ywy:6 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588930 6ywy:66 (3.05) BS01 rna ? GO:0003735 ... Q7SHB2 33056988
    588931 6ywy:7 (3.05) BS01 rna ? GO:0003735 ... Q7S518 33056988
    588932 6ywy:8 (3.05) BS01 rna ? GO:0005739 ... Q7S711 33056988
    588933 6ywy:9 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588934 6ywy:AA (3.05) BS01 rna N/A N/A N/A 33056988
    588935 6ywy:B (3.05) BS01 rna N/A GO:0003723 ... N/A 33056988
    588936 6ywy:BB (3.05) BS01 rna ? GO:0003735 ... V5ILE0 33056988
    588937 6ywy:BB (3.05) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    588938 6ywy:C (3.05) BS01 rna ? GO:0003735 ... Q873B3 33056988
    588939 6ywy:CC (3.05) BS01 rna ? GO:0005739 ... A0A1W5YJW8 33056988
    588940 6ywy:D (3.05) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    588941 6ywy:DD (3.05) BS01 rna N/A GO:0003723 ... N/A 33056988
    588942 6ywy:E (3.05) BS01 rna ? GO:0003735 ... Q96U12 33056988
    588943 6ywy:E (3.05) BS02 rna ? GO:0003735 ... Q96U12 33056988
    588944 6ywy:E (3.05) BS03 NAD ? GO:0003735 ... Q96U12 33056988
    588945 6ywy:EE (3.05) BS01 rna ? GO:0003723 ... Q8X048 33056988
    588946 6ywy:F (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588947 6ywy:FF (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588948 6ywy:G (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588949 6ywy:GG (3.05) BS01 rna N/A GO:0006412 ... N/A 33056988
    588950 6ywy:GG (3.05) BS02 rna N/A GO:0006412 ... N/A 33056988
    588951 6ywy:H (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588952 6ywy:HH (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588953 6ywy:I (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588954 6ywy:I (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    588955 6ywy:II (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588956 6ywy:II (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    588957 6ywy:J (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588958 6ywy:JJ (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588959 6ywy:K (3.05) BS01 rna ? GO:0003735 ... Q8X081 33056988
    588960 6ywy:K (3.05) BS02 MG ? GO:0003735 ... Q8X081 33056988
    588961 6ywy:KK (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588962 6ywy:KK (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    588963 6ywy:L (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588964 6ywy:LL (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588965 6ywy:M (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588966 6ywy:MM (3.05) BS01 rna ? GO:0003676 ... Q6MVY0 33056988
    588967 6ywy:MM (3.05) BS02 rna ? GO:0003676 ... Q6MVY0 33056988
    588968 6ywy:N (3.05) BS01 rna ? GO:0003735 ... Q6MVF2 33056988
    588969 6ywy:NN (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588970 6ywy:O (3.05) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    588971 6ywy:OO (3.05) BS01 rna ? GO:0003735 ... Q8X067 33056988
    588972 6ywy:P (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588973 6ywy:PP (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588974 6ywy:Q (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588975 6ywy:QQ (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588976 6ywy:R (3.05) BS01 rna ? GO:0003735 ... Q8X0Q2 33056988
    588977 6ywy:RR (3.05) BS01 rna ? GO:0003735 ... Q872A7 33056988
    588978 6ywy:S (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588979 6ywy:S (3.05) BS02 MG N/A GO:0003735 ... N/A 33056988
    588980 6ywy:SS (3.05) BS01 rna N/A GO:0003723 ... N/A 33056988
    588981 6ywy:T (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588982 6ywy:TT (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588983 6ywy:TT (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    588984 6ywy:U (3.05) BS01 rna ? GO:0003735 ... Q8X098 33056988
    588985 6ywy:UU (3.05) BS01 rna ? GO:0003735 ... Q873E4 33056988
    588986 6ywy:V (3.05) BS01 rna ? GO:0003735 ... Q9C2E5 33056988
    588987 6ywy:V (3.05) BS02 rna ? GO:0003735 ... Q9C2E5 33056988
    588988 6ywy:VV (3.05) BS01 rna ? GO:0005739 ... Q7SHR9 33056988
    588989 6ywy:W (3.05) BS01 rna ? GO:0003735 ... Q9HFL0 33056988
    588990 6ywy:W (3.05) BS02 ZN ? GO:0003735 ... Q9HFL0 33056988
    588991 6ywy:WW (3.05) BS01 rna ? GO:0005739 ... Q7RYW7 33056988
    588992 6ywy:X (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    588993 6ywy:XX (3.05) BS01 rna ? GO:0003735 ... Q7SD06 33056988
    588994 6ywy:XX (3.05) BS02 ATP ? GO:0003735 ... Q7SD06 33056988
    588995 6ywy:Y (3.05) BS01 rna ? GO:0003735 ... Q96U95 33056988
    588996 6ywy:YY (3.05) BS01 rna N/A N/A N/A 33056988
    588997 6ywy:ZZ (3.05) BS01 rna ? GO:0003735 ... Q9P5J2 33056988
    588998 6ywy:a (3.05) BS01 rna ? GO:0003735 ... Q8NIR6 33056988
    588999 6ywy:b (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    589000 6ywy:c (3.05) BS01 rna N/A N/A N/A 33056988

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).