SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    589001 6ywy:d (3.05) BS01 rna N/A GO:0000002 ... N/A 33056988
    589002 6ywy:e (3.05) BS01 rna ? GO:0003735 ... Q870V5 33056988
    589003 6ywy:f (3.05) BS01 rna ? GO:0005840 ... Q6M9C4 33056988
    589004 6ywy:g (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    589005 6ywy:i (3.05) BS01 rna N/A N/A N/A 33056988
    589006 6ywy:j (3.05) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    589007 6ywz:A (2.12) BS01 PWN ? N/A Q9Y566 34163995
    589008 6ywz:A (2.12) BS02 THR ? N/A Q9Y566 34163995
    589009 6ywz:A (2.12) BS03 LEU ? N/A Q9Y566 34163995
    589010 6ywz:B (2.12) BS01 PWN ? N/A Q9Y566 34163995
    589011 6ywz:B (2.12) BS02 THR ? N/A Q9Y566 34163995
    589012 6ywz:B (2.12) BS03 LEU ? N/A Q9Y566 34163995
    589013 6yx0:A (1.57) BS01 peptide ? N/A Q9Y566 34163995
    589014 6yx0:B (1.57) BS01 peptide ? N/A Q9Y566 34163995
    589015 6yx0:B (1.57) BS02 PWQ ? N/A Q9Y566 34163995
    589016 6yx1:A (1.8) BS01 PWT ? N/A Q9Y566 34163995
    589017 6yx1:A (1.8) BS02 THR ? N/A Q9Y566 34163995
    589018 6yx1:A (1.8) BS03 ARG ? N/A Q9Y566 34163995
    589019 6yx1:A (1.8) BS04 LEU ? N/A Q9Y566 34163995
    589020 6yx1:B (1.8) BS01 PWT ? N/A Q9Y566 34163995
    589021 6yx1:B (1.8) BS02 THR ? N/A Q9Y566 34163995
    589022 6yx1:B (1.8) BS03 ARG ? N/A Q9Y566 34163995
    589023 6yx1:B (1.8) BS04 LEU ? N/A Q9Y566 34163995
    589024 6yx2:A (1.62) BS01 peptide ? N/A Q9Y566 34163995
    589025 6yx2:B (1.62) BS01 peptide ? N/A Q9Y566 34163995
    589026 6yx2:B (1.62) BS02 PWW ? N/A Q9Y566 34163995
    589027 6yx3:A (1.22) BS01 MG 6.3.2.6 GO:0004639 ... B1MHW4 35037462
    589028 6yx3:A (1.22) BS02 ATP 6.3.2.6 GO:0004639 ... B1MHW4 35037462
    589029 6yx4:A (1.36) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589030 6yx4:A (1.36) BS02 6LR 2.7.13.3 N/A B8GAY9 33862085
    589031 6yx4:B (1.36) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589032 6yx4:B (1.36) BS02 6LR 2.7.13.3 N/A B8GAY9 33862085
    589033 6yx5:A (2.14) BS01 MG 3.6.5.2 GO:0003924 ... P61006 33469029
    589034 6yx5:A (2.14) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 33469029
    589035 6yx5:A (2.14) BS03 GLC 3.6.5.2 GO:0003924 ... P61006 33469029
    589036 6yx5:B (2.14) BS01 LJN 2.7.7.108
    2.7.7.n6
    N/A Q29ST3 33469029
    589037 6yx5:B (2.14) BS02 GLC 2.7.7.108
    2.7.7.n6
    N/A Q29ST3 33469029
    589038 6yx5:B (2.14) BS03 GLC 2.7.7.108
    2.7.7.n6
    N/A Q29ST3 33469029
    589039 6yx6:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589040 6yx6:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589041 6yx7:DDD (1.419) BS01 GLU ? GO:0009579 ... A0A4Y5PW23 N/A
    589042 6yx7:HHH (1.419) BS01 GLU ? GO:0009579 ... A0A4Y5PW23 N/A
    589043 6yx7:JJJ (1.419) BS01 DSN ? GO:0009579 ... A0A4Y5PW23 N/A
    589044 6yx7:KKK (1.419) BS01 LYS ? GO:0009579 ... A0A4Y5PW22 N/A
    589045 6yx7:LLL (1.419) BS01 DSN ? GO:0009579 ... A0A4Y5PW23 N/A
    589046 6yx8:AAA (1.831) BS01 PXQ ? GO:0009579 ... A0A4Y5PW22 N/A
    589047 6yx8:BBB (1.831) BS01 PXQ ? GO:0009579 ... A0A4Y5PW23 N/A
    589048 6yx8:BBB (1.831) BS02 PXQ ? GO:0009579 ... A0A4Y5PW23 N/A
    589049 6yx8:CCC (1.831) BS01 PXQ ? GO:0009579 ... A0A4Y5PW22 N/A
    589050 6yx8:DDD (1.831) BS01 PXQ ? GO:0009579 ... A0A4Y5PW23 N/A
    589051 6yx8:DDD (1.831) BS02 PXQ ? GO:0009579 ... A0A4Y5PW23 N/A
    589052 6yx8:EEE (1.831) BS01 PXQ ? GO:0009579 ... A0A4Y5PW22 N/A
    589053 6yx8:FFF (1.831) BS01 PXQ ? GO:0009579 ... A0A4Y5PW23 N/A
    589054 6yx8:FFF (1.831) BS02 PXQ ? GO:0009579 ... A0A4Y5PW23 N/A
    589055 6yx9:A (2.404) BS01 ZN ? GO:0016020 ... Q86V24 34723237
    589056 6yxa:A (3.95) BS01 MN 2.7.6.5 GO:0015969 ... O54408 32937119
    589057 6yxb:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589058 6yxb:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589059 6yxb:C (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589060 6yxb:D (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    589061 6yxc:A (1.65) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    589062 6yxc:B (1.65) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    589063 6yxd:A (2.9) BS01 ZN ? GO:0016020 ... Q86V24 34723237
    589064 6yxe:A (2.1) BS01 ZN 2.3.2.27 GO:0003697 ... Q86WT6 33021497
    589065 6yxe:A (2.1) BS02 ZN 2.3.2.27 GO:0003697 ... Q86WT6 33021497
    589066 6yxe:B (2.1) BS01 ZN 2.3.2.27 GO:0003697 ... Q86WT6 33021497
    589067 6yxe:B (2.1) BS02 ZN 2.3.2.27 GO:0003697 ... Q86WT6 33021497
    589068 6yxf:A (3.025) BS01 ZN ? GO:0016020 ... Q86V24 34723237
    589069 6yxf:A (3.025) BS02 DO3 ? GO:0016020 ... Q86V24 34723237
    589070 6yxf:H (3.025) BS01 DO3 N/A N/A N/A 34723237
    589071 6yxg:A (3.01) BS01 ZN ? GO:0016020 ... Q86V24 34723237
    589072 6yxg:H (3.01) BS01 7MT N/A N/A N/A 34723237
    589073 6yxh:A (2.6) BS01 ZN 3.5.1.-
    3.5.1.23
    GO:0000139 ... Q9NUN7 34723237
    589074 6yxh:A (2.6) BS02 CA 3.5.1.-
    3.5.1.23
    GO:0000139 ... Q9NUN7 34723237
    589075 6yxh:A (2.6) BS03 MG 3.5.1.-
    3.5.1.23
    GO:0000139 ... Q9NUN7 34723237
    589076 6yxi:A (1.34) BS01 PZ8 3.1.1.98 GO:0016787 ... Q6P988 32787107 MOAD: ic50=14uM
    BindingDB: IC50=430nM
    589077 6yxk:A (2.0) BS01 peptide N/A N/A N/A 35138894
    589078 6yxk:B (2.0) BS01 peptide N/A N/A N/A 35138894
    589079 6yxm:HHH (2.85) BS01 peptide N/A N/A N/A 35138894
    589080 6yxm:HHH (2.85) BS02 FUC N/A N/A N/A 35138894
    589081 6yxm:HHH (2.85) BS03 ZN N/A N/A N/A 35138894
    589082 6yxm:HHH (2.85) BS04 ZN N/A N/A N/A 35138894
    589083 6yxm:LLL (2.85) BS01 peptide N/A N/A N/A 35138894
    589084 6yxr:1 (3.4) BS01 CLA ? GO:0009765 ... C1K003 32569661
    589085 6yxr:1 (3.4) BS02 CLA ? GO:0009765 ... C1K003 32569661
    589086 6yxr:1 (3.4) BS03 CLA ? GO:0009765 ... C1K003 32569661
    589087 6yxr:1 (3.4) BS04 CLA ? GO:0009765 ... C1K003 32569661
    589088 6yxr:1 (3.4) BS05 CLA ? GO:0009765 ... C1K003 32569661
    589089 6yxr:1 (3.4) BS06 CLA ? GO:0009765 ... C1K003 32569661
    589090 6yxr:1 (3.4) BS07 CLA ? GO:0009765 ... C1K003 32569661
    589091 6yxr:1 (3.4) BS08 CLA ? GO:0009765 ... C1K003 32569661
    589092 6yxr:1 (3.4) BS09 CHL ? GO:0009765 ... C1K003 32569661
    589093 6yxr:1 (3.4) BS10 CLA ? GO:0009765 ... C1K003 32569661
    589094 6yxr:1 (3.4) BS11 CLA ? GO:0009765 ... C1K003 32569661
    589095 6yxr:1 (3.4) BS12 CLA ? GO:0009765 ... C1K003 32569661
    589096 6yxr:1 (3.4) BS13 CLA ? GO:0009765 ... C1K003 32569661
    589097 6yxr:2 (3.4) BS01 CLA N/A GO:0009765 ... N/A 32569661
    589098 6yxr:2 (3.4) BS02 CLA N/A GO:0009765 ... N/A 32569661
    589099 6yxr:2 (3.4) BS03 CLA N/A GO:0009765 ... N/A 32569661
    589100 6yxr:2 (3.4) BS04 CLA N/A GO:0009765 ... N/A 32569661
    589101 6yxr:2 (3.4) BS05 CLA N/A GO:0009765 ... N/A 32569661
    589102 6yxr:2 (3.4) BS06 CLA N/A GO:0009765 ... N/A 32569661
    589103 6yxr:2 (3.4) BS07 CLA N/A GO:0009765 ... N/A 32569661
    589104 6yxr:2 (3.4) BS08 CHL N/A GO:0009765 ... N/A 32569661
    589105 6yxr:2 (3.4) BS09 CHL N/A GO:0009765 ... N/A 32569661
    589106 6yxr:2 (3.4) BS10 CHL N/A GO:0009765 ... N/A 32569661
    589107 6yxr:2 (3.4) BS11 CLA N/A GO:0009765 ... N/A 32569661
    589108 6yxr:2 (3.4) BS12 CHL N/A GO:0009765 ... N/A 32569661
    589109 6yxr:2 (3.4) BS13 CLA N/A GO:0009765 ... N/A 32569661
    589110 6yxr:2 (3.4) BS14 CLA N/A GO:0009765 ... N/A 32569661
    589111 6yxr:3 (3.4) BS01 CHL ? GO:0009765 ... C1K004 32569661
    589112 6yxr:3 (3.4) BS02 CLA ? GO:0009765 ... C1K004 32569661
    589113 6yxr:3 (3.4) BS03 CLA ? GO:0009765 ... C1K004 32569661
    589114 6yxr:3 (3.4) BS04 CHL ? GO:0009765 ... C1K004 32569661
    589115 6yxr:3 (3.4) BS05 CLA ? GO:0009765 ... C1K004 32569661
    589116 6yxr:3 (3.4) BS06 CLA ? GO:0009765 ... C1K004 32569661
    589117 6yxr:3 (3.4) BS07 CLA ? GO:0009765 ... C1K004 32569661
    589118 6yxr:3 (3.4) BS08 CLA ? GO:0009765 ... C1K004 32569661
    589119 6yxr:3 (3.4) BS09 CLA ? GO:0009765 ... C1K004 32569661
    589120 6yxr:3 (3.4) BS10 CLA ? GO:0009765 ... C1K004 32569661
    589121 6yxr:3 (3.4) BS11 CLA ? GO:0009765 ... C1K004 32569661
    589122 6yxr:3 (3.4) BS12 CLA ? GO:0009765 ... C1K004 32569661
    589123 6yxr:3 (3.4) BS13 CLA ? GO:0009765 ... C1K004 32569661
    589124 6yxr:3 (3.4) BS14 CLA ? GO:0009765 ... C1K004 32569661
    589125 6yxr:3 (3.4) BS15 CLA ? GO:0009765 ... C1K004 32569661
    589126 6yxr:4 (3.4) BS01 CHL N/A GO:0009765 ... N/A 32569661
    589127 6yxr:4 (3.4) BS02 CLA N/A GO:0009765 ... N/A 32569661
    589128 6yxr:4 (3.4) BS03 CLA N/A GO:0009765 ... N/A 32569661
    589129 6yxr:4 (3.4) BS04 CLA N/A GO:0009765 ... N/A 32569661
    589130 6yxr:4 (3.4) BS05 CLA N/A GO:0009765 ... N/A 32569661
    589131 6yxr:4 (3.4) BS06 CLA N/A GO:0009765 ... N/A 32569661
    589132 6yxr:4 (3.4) BS07 CLA N/A GO:0009765 ... N/A 32569661
    589133 6yxr:4 (3.4) BS08 CLA N/A GO:0009765 ... N/A 32569661
    589134 6yxr:4 (3.4) BS09 CLA N/A GO:0009765 ... N/A 32569661
    589135 6yxr:4 (3.4) BS10 CHL N/A GO:0009765 ... N/A 32569661
    589136 6yxr:4 (3.4) BS11 CHL N/A GO:0009765 ... N/A 32569661
    589137 6yxr:4 (3.4) BS12 CLA N/A GO:0009765 ... N/A 32569661
    589138 6yxr:4 (3.4) BS13 CHL N/A GO:0009765 ... N/A 32569661
    589139 6yxr:4 (3.4) BS14 CLA N/A GO:0009765 ... N/A 32569661
    589140 6yxr:A (3.4) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589141 6yxr:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589142 6yxr:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589143 6yxr:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589144 6yxr:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589145 6yxr:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589146 6yxr:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589147 6yxr:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589148 6yxr:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589149 6yxr:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589150 6yxr:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589151 6yxr:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589152 6yxr:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589153 6yxr:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589154 6yxr:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589155 6yxr:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589156 6yxr:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589157 6yxr:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589158 6yxr:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589159 6yxr:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589160 6yxr:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589161 6yxr:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589162 6yxr:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589163 6yxr:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589164 6yxr:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589165 6yxr:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589166 6yxr:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589167 6yxr:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589168 6yxr:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589169 6yxr:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589170 6yxr:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589171 6yxr:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589172 6yxr:A (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589173 6yxr:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589174 6yxr:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589175 6yxr:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589176 6yxr:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589177 6yxr:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589178 6yxr:A (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589179 6yxr:A (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589180 6yxr:A (3.4) BS41 PQN 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589181 6yxr:A (3.4) BS42 SF4 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589182 6yxr:A (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589183 6yxr:A (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589184 6yxr:A (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    589185 6yxr:B (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589186 6yxr:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589187 6yxr:B (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589188 6yxr:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589189 6yxr:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589190 6yxr:B (3.4) BS06 SF4 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589191 6yxr:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589192 6yxr:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589193 6yxr:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589194 6yxr:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589195 6yxr:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589196 6yxr:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589197 6yxr:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589198 6yxr:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589199 6yxr:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589200 6yxr:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).