SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    589201 6yxr:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589202 6yxr:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589203 6yxr:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589204 6yxr:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589205 6yxr:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589206 6yxr:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589207 6yxr:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589208 6yxr:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589209 6yxr:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589210 6yxr:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589211 6yxr:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589212 6yxr:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589213 6yxr:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589214 6yxr:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589215 6yxr:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589216 6yxr:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589217 6yxr:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589218 6yxr:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589219 6yxr:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589220 6yxr:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589221 6yxr:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589222 6yxr:B (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589223 6yxr:B (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589224 6yxr:B (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589225 6yxr:B (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589226 6yxr:B (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589227 6yxr:B (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589228 6yxr:B (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589229 6yxr:B (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589230 6yxr:B (3.4) BS46 PQN 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589231 6yxr:B (3.4) BS47 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    589232 6yxr:C (3.4) BS01 SF4 1.97.1.12 GO:0009055 ... D0FXW7 32569661
    589233 6yxr:C (3.4) BS02 SF4 1.97.1.12 GO:0009055 ... D0FXW7 32569661
    589234 6yxr:F (3.4) BS01 CLA N/A GO:0009522 ... N/A 32569661
    589235 6yxr:F (3.4) BS02 CLA N/A GO:0009522 ... N/A 32569661
    589236 6yxr:F (3.4) BS03 CLA N/A GO:0009522 ... N/A 32569661
    589237 6yxr:F (3.4) BS04 CLA N/A GO:0009522 ... N/A 32569661
    589238 6yxr:F (3.4) BS05 CLA N/A GO:0009522 ... N/A 32569661
    589239 6yxr:J (3.4) BS01 CLA ? GO:0009507 ... D0FXW0 32569661
    589240 6yxr:J (3.4) BS02 CLA ? GO:0009507 ... D0FXW0 32569661
    589241 6yxr:J (3.4) BS03 CLA ? GO:0009507 ... D0FXW0 32569661
    589242 6yxr:J (3.4) BS04 CLA ? GO:0009507 ... D0FXW0 32569661
    589243 6yxs:A (2.0) BS01 MG 2.7.1.32 N/A Q8IM71 N/A
    589244 6yxt:A (2.2) BS01 MG 2.7.1.32 N/A Q8IM71 N/A
    589245 6yxt:A (2.2) BS02 MG 2.7.1.32 N/A Q8IM71 N/A
    589246 6yxt:A (2.2) BS03 ADP 2.7.1.32 N/A Q8IM71 N/A
    589247 6yxu:D (3.08) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 33339823
    589248 6yxu:D (3.08) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 33339823
    589249 6yxu:D (3.08) BS03 MG 2.7.7.6 GO:0000287 ... A0QS66 33339823
    589250 6yxv:A (2.298) BS01 Q2H 2.7.10.2 GO:0004672 ... Q05397 33497606
    589251 6yxv:B (2.298) BS01 Q2H 2.7.10.2 GO:0004672 ... Q05397 33497606
    589252 6yxv:C (2.298) BS01 Q2H 2.7.10.2 GO:0004672 ... Q05397 33497606
    589253 6yxv:D (2.298) BS01 Q2H 2.7.10.2 GO:0004672 ... Q05397 33497606
    589254 6yxw:A (2.06) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    589255 6yxw:C (2.06) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    589256 6yxx:A1 (3.9) BS01 rna ? GO:0003735 ... Q586A2 32679035
    589257 6yxx:A2 (3.9) BS01 rna ? GO:0003735 ... Q38EM7 32679035
    589258 6yxx:A3 (3.9) BS01 rna ? N/A C9ZY77 32679035
    589259 6yxx:A5 (3.9) BS01 rna ? GO:0005634 ... Q584F4 32679035
    589260 6yxx:A5 (3.9) BS02 ZN ? GO:0005634 ... Q584F4 32679035
    589261 6yxx:A8 (3.9) BS01 rna ? N/A D0A1K1 32679035
    589262 6yxx:A8 (3.9) BS02 MG ? N/A D0A1K1 32679035
    589263 6yxx:AE (3.9) BS01 rna ? GO:0003735 ... Q580R4 32679035
    589264 6yxx:AF (3.9) BS01 rna ? GO:0003735 ... A0A1G4HYD1 32679035
    589265 6yxx:AF (3.9) BS02 NAD ? GO:0003735 ... A0A1G4HYD1 32679035
    589266 6yxx:AI (3.9) BS01 rna ? GO:0005737 ... Q57UC5 32679035
    589267 6yxx:AN (3.9) BS01 rna ? GO:0003729 ... Q580D5 32679035
    589268 6yxx:AP (3.9) BS01 rna ? GO:0003735 ... Q57U68 32679035
    589269 6yxx:AP (3.9) BS02 NAD ? GO:0003735 ... Q57U68 32679035
    589270 6yxx:AR (3.9) BS01 rna ? GO:0000315 ... Q57YI7 32679035
    589271 6yxx:AT (3.9) BS01 rna ? GO:0005737 ... Q4GZ98 32679035
    589272 6yxx:AU (3.9) BS01 rna ? GO:0003735 ... Q383R2 32679035
    589273 6yxx:AV (3.9) BS01 rna ? GO:0003723 ... C9ZT11 32679035
    589274 6yxx:AW (3.9) BS01 rna ? GO:0003735 ... C9ZSI8 32679035
    589275 6yxx:AX (3.9) BS01 rna ? GO:0003735 ... Q387G3 32679035
    589276 6yxx:AY (3.9) BS01 rna ? GO:0003723 ... C9ZK52 32679035
    589277 6yxx:Ae (3.9) BS01 rna ? GO:0005654 ... Q383U6 32679035
    589278 6yxx:Af (3.9) BS01 rna ? GO:0005739 ... Q383S1 32679035
    589279 6yxx:Ag (3.9) BS01 rna ? GO:0003735 ... Q583E5 32679035
    589280 6yxx:Al (3.9) BS01 rna ? GO:0005739 ... Q57Z82 32679035
    589281 6yxx:Ao (3.9) BS01 rna N/A N/A N/A 32679035
    589282 6yxx:Ap (3.9) BS01 rna ? N/A A0A3L6L3K9 32679035
    589283 6yxx:At (3.9) BS01 rna ? N/A C9ZU82 32679035
    589284 6yxx:Av (3.9) BS01 rna ? N/A D0A934 32679035
    589285 6yxx:Av (3.9) BS02 NAD ? N/A D0A934 32679035
    589286 6yxx:BA (3.9) BS01 rna ? N/A D0A5V6 32679035
    589287 6yxx:BE (3.9) BS01 rna ? GO:0005739 ... Q57WG1 32679035
    589288 6yxx:BF (3.9) BS01 rna ? N/A A0A3L6LA84 32679035
    589289 6yxx:BI (3.9) BS01 rna ? N/A D0A108 32679035
    589290 6yxx:BJ (3.9) BS01 peptide ? GO:0005739 ... Q383M2 32679035
    589291 6yxx:BK (3.9) BS01 rna ? N/A C9ZQR6 32679035
    589292 6yxx:BK (3.9) BS02 peptide ? N/A C9ZQR6 32679035
    589293 6yxx:BL (3.9) BS01 rna ? N/A D0A4P5 32679035
    589294 6yxx:BO (3.9) BS01 rna ? N/A D0A755 32679035
    589295 6yxx:BQ (3.9) BS01 rna 5.2.1.8 GO:0000413 ... Q57WF8 32679035
    589296 6yxx:BR (3.9) BS01 rna ? GO:0005739 ... Q586A6 32679035
    589297 6yxx:BS (3.9) BS01 rna ? GO:0005737 ... Q38FG8 32679035
    589298 6yxx:BT (3.9) BS01 rna ? N/A A0A3L6L8W0 32679035
    589299 6yxx:BU (3.9) BS01 rna ? N/A D0A7Z9 32679035
    589300 6yxx:BU (3.9) BS02 peptide ? N/A D0A7Z9 32679035
    589301 6yxx:BW (3.9) BS01 rna ? GO:0005739 ... Q57WW5 32679035
    589302 6yxx:Ba (3.9) BS01 rna ? N/A D0A4T0 32679035
    589303 6yxx:Bc (3.9) BS01 rna ? GO:0005739 ... Q389K3 32679035
    589304 6yxx:E1 (3.9) BS01 rna ? GO:0005739 ... Q57WG6 32679035
    589305 6yxx:E2 (3.9) BS01 rna ? N/A C9ZTN9 32679035
    589306 6yxx:E2 (3.9) BS02 ZN ? N/A C9ZTN9 32679035
    589307 6yxx:E2 (3.9) BS03 ZN ? N/A C9ZTN9 32679035
    589308 6yxx:E2 (3.9) BS04 ZN ? N/A C9ZTN9 32679035
    589309 6yxx:E2 (3.9) BS05 ZN ? N/A C9ZTN9 32679035
    589310 6yxx:E3 (3.9) BS01 peptide ? N/A D0A795 32679035
    589311 6yxx:E7 (3.9) BS01 rna N/A N/A N/A 32679035
    589312 6yxx:E8 (3.9) BS01 rna ? GO:0005739 ... Q57YZ6 32679035
    589313 6yxx:E9 (3.9) BS01 rna ? N/A A0A3L6L206 32679035
    589314 6yxx:E9 (3.9) BS02 ZN ? N/A A0A3L6L206 32679035
    589315 6yxx:EA (3.9) BS01 rna ? GO:0005525 ... Q57TZ4 32679035
    589316 6yxx:EA (3.9) BS02 GTP ? GO:0005525 ... Q57TZ4 32679035
    589317 6yxx:EA (3.9) BS03 MG ? GO:0005525 ... Q57TZ4 32679035
    589318 6yxx:EA (3.9) BS04 GTP ? GO:0005525 ... Q57TZ4 32679035
    589319 6yxx:EA (3.9) BS05 MG ? GO:0005525 ... Q57TZ4 32679035
    589320 6yxx:EB (3.9) BS01 rna ? GO:0003676 ... D0A9G9 32679035
    589321 6yxx:EB (3.9) BS02 ATP ? GO:0003676 ... D0A9G9 32679035
    589322 6yxx:EC (3.9) BS01 rna ? GO:0001522 ... Q38FJ3 32679035
    589323 6yxx:ED (3.9) BS01 rna ? GO:0001522 ... Q385G9 32679035
    589324 6yxx:EE (3.9) BS01 rna ? GO:0003723 ... C9ZZ65 32679035
    589325 6yxx:EF (3.9) BS01 rna ? GO:0003723 ... C9ZWD9 32679035
    589326 6yxx:EG (3.9) BS01 rna ? GO:0005730 ... Q387S8 32679035
    589327 6yxx:EG (3.9) BS02 ZN ? GO:0005730 ... Q387S8 32679035
    589328 6yxx:EL (3.9) BS01 rna ? N/A C9ZVC0 32679035
    589329 6yxx:EL (3.9) BS02 peptide ? N/A C9ZVC0 32679035
    589330 6yxx:EM (3.9) BS01 rna ? GO:0003924 ... Q38E75 32679035
    589331 6yxx:EM (3.9) BS02 peptide ? GO:0003924 ... Q38E75 32679035
    589332 6yxx:EN (3.9) BS01 rna ? N/A C9ZPS0 32679035
    589333 6yxx:ES (3.9) BS01 PM8 ? GO:0006629 ... A0A3L6L1Y4 32679035
    589334 6yxx:ET (3.9) BS01 rna ? GO:0005739 ... Q383S4 32679035
    589335 6yxy:A1 (3.1) BS01 rna ? GO:0003735 ... Q586A2 32679035
    589336 6yxy:A2 (3.1) BS01 rna ? GO:0003735 ... Q38EM7 32679035
    589337 6yxy:A3 (3.1) BS01 rna ? GO:0005739 ... Q38ED8 32679035
    589338 6yxy:A5 (3.1) BS01 rna ? GO:0005634 ... Q584F4 32679035
    589339 6yxy:A5 (3.1) BS02 ZN ? GO:0005634 ... Q584F4 32679035
    589340 6yxy:A8 (3.1) BS01 rna ? N/A D0A1K1 32679035
    589341 6yxy:A8 (3.1) BS02 peptide ? N/A D0A1K1 32679035
    589342 6yxy:AE (3.1) BS01 rna ? GO:0003735 ... Q580R4 32679035
    589343 6yxy:AF (3.1) BS01 rna ? GO:0003735 ... D0A7A6 32679035
    589344 6yxy:AF (3.1) BS02 peptide ? GO:0003735 ... D0A7A6 32679035
    589345 6yxy:AF (3.1) BS03 NAD ? GO:0003735 ... D0A7A6 32679035
    589346 6yxy:AI (3.1) BS01 rna ? GO:0005737 ... Q57UC5 32679035
    589347 6yxy:AN (3.1) BS01 rna ? GO:0003729 ... Q580D5 32679035
    589348 6yxy:AO (3.1) BS01 rna N/A GO:0003735 ... N/A 32679035
    589349 6yxy:AO (3.1) BS02 MG N/A GO:0003735 ... N/A 32679035
    589350 6yxy:AP (3.1) BS01 rna ? GO:0003735 ... Q57U68 32679035
    589351 6yxy:AP (3.1) BS02 NAD ? GO:0003735 ... Q57U68 32679035
    589352 6yxy:AR (3.1) BS01 rna ? GO:0000315 ... Q57YI7 32679035
    589353 6yxy:AT (3.1) BS01 rna ? GO:0005737 ... Q4GZ98 32679035
    589354 6yxy:AU (3.1) BS01 rna ? GO:0003735 ... Q383R2 32679035
    589355 6yxy:AV (3.1) BS01 rna ? GO:0003723 ... C9ZT11 32679035
    589356 6yxy:AW (3.1) BS01 rna ? GO:0003735 ... C9ZSI8 32679035
    589357 6yxy:AX (3.1) BS01 rna ? GO:0003735 ... Q387G3 32679035
    589358 6yxy:AY (3.1) BS01 rna ? GO:0003723 ... C9ZK52 32679035
    589359 6yxy:Ae (3.1) BS01 rna ? GO:0005654 ... Q383U6 32679035
    589360 6yxy:Af (3.1) BS01 rna ? GO:0005739 ... Q383S1 32679035
    589361 6yxy:Ag (3.1) BS01 rna ? GO:0003735 ... Q583E5 32679035
    589362 6yxy:Al (3.1) BS01 rna ? GO:0005739 ... Q57Z82 32679035
    589363 6yxy:Ao (3.1) BS01 rna ? GO:0005739 ... Q385V2 32679035
    589364 6yxy:Ap (3.1) BS01 rna ? N/A A0A3L6L3K9 32679035
    589365 6yxy:At (3.1) BS01 rna ? N/A C9ZU82 32679035
    589366 6yxy:Av (3.1) BS01 rna ? N/A D0A934 32679035
    589367 6yxy:Av (3.1) BS02 NAD ? N/A D0A934 32679035
    589368 6yxy:BA (3.1) BS01 rna ? GO:0005739 ... Q386Z1 32679035
    589369 6yxy:BE (3.1) BS01 rna ? GO:0005739 ... Q57WG1 32679035
    589370 6yxy:BF (3.1) BS01 rna ? N/A A0A3L6LA84 32679035
    589371 6yxy:BH (3.1) BS01 rna ? GO:0005739 ... Q38AM5 32679035
    589372 6yxy:BI (3.1) BS01 rna ? N/A D0A108 32679035
    589373 6yxy:BJ (3.1) BS01 rna ? GO:0005739 ... Q383M2 32679035
    589374 6yxy:BK (3.1) BS01 rna ? N/A C9ZQR6 32679035
    589375 6yxy:BL (3.1) BS01 rna ? GO:0005737 ... Q389N4 32679035
    589376 6yxy:BO (3.1) BS01 rna ? GO:0005739 ... Q385L5 32679035
    589377 6yxy:BQ (3.1) BS01 rna 5.2.1.8 GO:0000413 ... Q57WF8 32679035
    589378 6yxy:BR (3.1) BS01 rna ? GO:0005739 ... Q586A6 32679035
    589379 6yxy:BS (3.1) BS01 rna ? GO:0005737 ... Q38FG8 32679035
    589380 6yxy:BT (3.1) BS01 rna ? N/A A0A3L6L8W0 32679035
    589381 6yxy:BU (3.1) BS01 rna ? N/A D0A7Z9 32679035
    589382 6yxy:BW (3.1) BS01 rna ? GO:0005739 ... Q57WW5 32679035
    589383 6yxy:BX (3.1) BS01 rna ? GO:0046872 ... Q585P1 32679035
    589384 6yxy:BX (3.1) BS02 ZN ? GO:0046872 ... Q585P1 32679035
    589385 6yxy:BX (3.1) BS03 ZN ? GO:0046872 ... Q585P1 32679035
    589386 6yxy:Ba (3.1) BS01 rna ? N/A D0A4T0 32679035
    589387 6yxy:Bc (3.1) BS01 rna ? GO:0005739 ... Q389K3 32679035
    589388 6yxy:Bg (3.1) BS01 rna ? GO:0010608 ... Q587H8 32679035
    589389 6yxy:Bh (3.1) BS01 ZN ? N/A A0A3L6L2V1 32679035
    589390 6yxy:Bi (3.1) BS01 rna ? GO:0005737 ... Q4GZ80 32679035
    589391 6yxy:EA (3.1) BS01 rna ? GO:0005525 ... Q57TZ4 32679035
    589392 6yxy:EA (3.1) BS02 GTP ? GO:0005525 ... Q57TZ4 32679035
    589393 6yxy:EA (3.1) BS03 MG ? GO:0005525 ... Q57TZ4 32679035
    589394 6yxy:EA (3.1) BS04 GTP ? GO:0005525 ... Q57TZ4 32679035
    589395 6yxy:EA (3.1) BS05 MG ? GO:0005525 ... Q57TZ4 32679035
    589396 6yxy:EB (3.1) BS01 rna ? GO:0003676 ... D0A9G9 32679035
    589397 6yxy:EB (3.1) BS02 ATP ? GO:0003676 ... D0A9G9 32679035
    589398 6yxy:EC (3.1) BS01 rna ? GO:0001522 ... Q38FJ3 32679035
    589399 6yxy:ED (3.1) BS01 rna ? GO:0001522 ... Q385G9 32679035
    589400 6yxy:EE (3.1) BS01 rna ? GO:0003723 ... Q38DC9 32679035

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).