SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    591001 6z6n:Lp (2.9) BS02 ZN ? GO:0002181 ... P61513 32687489
    591002 6z6n:Lr (2.9) BS01 rna ? GO:0002181 ... P46779 32687489
    591003 6z6n:Lz (2.9) BS01 rna ? GO:0002181 ... P62906 32687489
    591004 6z6n:Lz (2.9) BS02 rna ? GO:0002181 ... P62906 32687489
    591005 6z6n:SA (2.9) BS01 rna ? GO:0000028 ... P08865 32687489
    591006 6z6n:SB (2.9) BS01 rna ? GO:0002181 ... P61247 32687489
    591007 6z6n:SB (2.9) BS02 rna ? GO:0002181 ... P61247 32687489
    591008 6z6n:SC (2.9) BS01 rna ? GO:0002181 ... P15880 32687489
    591009 6z6n:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32687489
    591010 6z6n:SE (2.9) BS01 rna ? GO:0002181 ... P62701 32687489
    591011 6z6n:SF (2.9) BS01 rna ? GO:0000028 ... P46782 32687489
    591012 6z6n:SF (2.9) BS02 rna ? GO:0000028 ... P46782 32687489
    591013 6z6n:SG (2.9) BS01 rna ? GO:0000082 ... P62753 32687489
    591014 6z6n:SH (2.9) BS01 rna ? GO:0001843 ... P62081 32687489
    591015 6z6n:SI (2.9) BS01 rna ? GO:0000462 ... P62241 32687489
    591016 6z6n:SI (2.9) BS02 rna ? GO:0000462 ... P62241 32687489
    591017 6z6n:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 32687489
    591018 6z6n:SK (2.9) BS01 rna ? GO:0002181 ... P46783 32687489
    591019 6z6n:SL (2.9) BS01 rna ? GO:0002181 ... P62280 32687489
    591020 6z6n:SM (2.9) BS01 rna ? GO:0002181 ... P25398 32687489
    591021 6z6n:SN (2.9) BS01 rna ? GO:0002181 ... P62277 32687489
    591022 6z6n:SN (2.9) BS02 rna ? GO:0002181 ... P62277 32687489
    591023 6z6n:SO (2.9) BS01 rna ? GO:0000028 ... P62263 32687489
    591024 6z6n:SP (2.9) BS01 rna ? GO:0000028 ... P62841 32687489
    591025 6z6n:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 32687489
    591026 6z6n:SR (2.9) BS01 rna ? GO:0002181 ... P08708 32687489
    591027 6z6n:SS (2.9) BS01 rna ? GO:0002181 ... P62269 32687489
    591028 6z6n:ST (2.9) BS01 rna ? GO:0000028 ... P39019 32687489
    591029 6z6n:SU (2.9) BS01 rna ? GO:0002181 ... P60866 32687489
    591030 6z6n:SW (2.9) BS01 rna ? GO:0002181 ... P62244 32687489
    591031 6z6n:SX (2.9) BS01 rna ? GO:0002181 ... P62266 32687489
    591032 6z6n:SY (2.9) BS01 rna ? GO:0002181 ... P62847 32687489
    591033 6z6n:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 32687489
    591034 6z6n:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 32687489
    591035 6z6n:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 32687489
    591036 6z6n:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 32687489
    591037 6z6n:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 32687489
    591038 6z6n:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 32687489
    591039 6z6n:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 32687489
    591040 6z6n:Se (2.9) BS01 rna ? GO:0003735 ... P62861 32687489
    591041 6z6n:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 32687489
    591042 6z6n:Sf (2.9) BS02 ZN ? GO:0002181 ... P62979 32687489
    591043 6z6n:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 32687489
    591044 6z6o:A (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591045 6z6o:B (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591046 6z6o:E (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591047 6z6o:F (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591048 6z6o:I (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591049 6z6o:J (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591050 6z6o:M (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591051 6z6o:N (3.8) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591052 6z6p:A (4.43) BS01 dna ? GO:0000786 ... P84233 33523989
    591053 6z6p:A (4.43) BS02 dna ? GO:0000786 ... P84233 33523989
    591054 6z6p:B (4.43) BS01 dna ? GO:0003677 ... P62799 33523989
    591055 6z6p:B (4.43) BS02 dna ? GO:0003677 ... P62799 33523989
    591056 6z6p:C (4.43) BS01 dna ? GO:0000786 ... Q6AZJ8 33523989
    591057 6z6p:C (4.43) BS02 dna ? GO:0000786 ... Q6AZJ8 33523989
    591058 6z6p:D (4.43) BS01 dna ? GO:0000786 ... P02281 33523989
    591059 6z6p:D (4.43) BS02 dna ? GO:0000786 ... P02281 33523989
    591060 6z6p:E (4.43) BS01 dna ? GO:0000786 ... P84233 33523989
    591061 6z6p:E (4.43) BS02 dna ? GO:0000786 ... P84233 33523989
    591062 6z6p:F (4.43) BS01 dna ? GO:0003677 ... P62799 33523989
    591063 6z6p:F (4.43) BS02 dna ? GO:0003677 ... P62799 33523989
    591064 6z6p:G (4.43) BS01 dna ? GO:0000786 ... P06897 33523989
    591065 6z6p:G (4.43) BS02 dna ? GO:0000786 ... P06897 33523989
    591066 6z6p:H (4.43) BS01 dna ? GO:0000786 ... P02281 33523989
    591067 6z6p:H (4.43) BS02 dna ? GO:0000786 ... P02281 33523989
    591068 6z6p:K (4.43) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591069 6z6p:L (4.43) BS01 ZN 3.5.1.98 GO:0000118 ... P53973 33523989
    591070 6z6p:M (4.43) BS01 dna ? GO:0005634 ... Q06623 33523989
    591071 6z6q:A (1.81) BS01 peptide 1.14.11.16 GO:0018193 ... Q12797 34163896
    591072 6z6q:A (1.81) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 34163896
    591073 6z6q:A (1.81) BS03 QA8 1.14.11.16 GO:0018193 ... Q12797 34163896
    591074 6z6r:A (2.13) BS01 peptide 1.14.11.16 GO:0018193 ... Q12797 34163896
    591075 6z6r:A (2.13) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 34163896
    591076 6z6r:A (2.13) BS03 UQK 1.14.11.16 GO:0018193 ... Q12797 34163896
    591077 6z6s:DDD (3.153) BS01 ZN 2.7.7.80
    2.8.1.11
    GO:0008641 ... G0SC54 32901956
    591078 6z6y:A (1.34) BS01 L4L ? GO:0030246 ... O00214 33409472
    591079 6z6z:A (1.78) BS01 CA ? GO:0005506 ... P80188 N/A
    591080 6z72:A (2.3) BS01 A3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33202171
    591081 6z72:B (2.3) BS01 A3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33202171
    591082 6z72:C (2.3) BS01 A3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33202171
    591083 6z72:D (2.3) BS01 A3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33202171
    591084 6z74:A (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    591085 6z74:B (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    591086 6z74:C (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    591087 6z74:D (2.0) BS01 ZN ? GO:0003677 ... A9CJ36 33313837
    591088 6z79:A (1.92) BS01 I3C ? N/A A0A291L8F4 33462435
    591089 6z7a:A (1.21) BS01 MAN ? N/A A0A291L8F4 N/A
    591090 6z7b:A (1.86) BS01 SVR ? N/A A0A291L8F4 33462435
    591091 6z7b:B (1.86) BS01 MAN ? N/A A0A291L8F4 33462435
    591092 6z7b:B (1.86) BS02 SVR ? N/A A0A291L8F4 33462435
    591093 6z7c:A (1.64) BS01 MAN ? N/A A0A291L8F4 33462435
    591094 6z7d:A (1.75) BS01 MAN ? N/A A0A291L8F4 33462435
    591095 6z7e:A (1.663) BS01 MAN ? N/A A0A291L8F4 33462435
    591096 6z7f:AAA (1.605) BS01 QB5 ? N/A P25440 32691591
    591097 6z7g:AAA (1.59) BS01 QB5 ? N/A O60885 32691591
    591098 6z7k:A (1.1) BS01 QBZ 3.5.2.6 GO:0008800 ... G3G192 35612361
    591099 6z7l:AAA (1.624) BS01 QAN ? N/A O60885 32691589
    591100 6z7m:AAA (1.26) BS01 QAZ ? N/A O60885 32691589
    591101 6z7n:A (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591102 6z7n:A (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591103 6z7n:B (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591104 6z7n:B (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591105 6z7n:C (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591106 6z7n:C (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591107 6z7n:D (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591108 6z7n:D (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591109 6z7n:E (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591110 6z7n:E (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591111 6z7n:F (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591112 6z7n:F (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591113 6z7n:F (3.77) BS03 peptide ? GO:0005198 ... P11820 33523995
    591114 6z7n:G (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591115 6z7n:G (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591116 6z7n:H (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591117 6z7n:H (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591118 6z7n:H (3.77) BS03 peptide ? GO:0005198 ... P11820 33523995
    591119 6z7n:I (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591120 6z7n:I (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591121 6z7n:J (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591122 6z7n:J (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591123 6z7n:K (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591124 6z7n:L (3.77) BS01 peptide ? GO:0005198 ... P11820 33523995
    591125 6z7n:L (3.77) BS02 peptide ? GO:0005198 ... P11820 33523995
    591126 6z7n:M (3.77) BS01 peptide ? GO:0005198 ... Q9QAH8 33523995
    591127 6z7n:O (3.77) BS01 peptide ? GO:0019028 ... Q67716 33523995
    591128 6z7n:T (3.77) BS01 peptide ? GO:0019028 ... P11822 33523995
    591129 6z7n:U (3.77) BS01 peptide ? GO:0019028 ... P11822 33523995
    591130 6z7o:A (2.33) BS01 ZN ? GO:0000806 ... Q8IFW4 33708404
    591131 6z7p:A (4.8) BS01 MRH ? GO:0005509 ... P35828 31883796
    591132 6z7p:A (4.8) BS02 BMA ? GO:0005509 ... P35828 31883796
    591133 6z7p:A (4.8) BS03 MRH ? GO:0005509 ... P35828 31883796
    591134 6z7p:A (4.8) BS04 MRH ? GO:0005509 ... P35828 31883796
    591135 6z7p:A (4.8) BS05 CA ? GO:0005509 ... P35828 31883796
    591136 6z7p:A (4.8) BS06 CA ? GO:0005509 ... P35828 31883796
    591137 6z7p:A (4.8) BS07 CA ? GO:0005509 ... P35828 31883796
    591138 6z7p:A (4.8) BS08 CA ? GO:0005509 ... P35828 31883796
    591139 6z7p:A (4.8) BS09 CA ? GO:0005509 ... P35828 31883796
    591140 6z7p:A (4.8) BS10 CA ? GO:0005509 ... P35828 31883796
    591141 6z7p:A (4.8) BS11 CA ? GO:0005509 ... P35828 31883796
    591142 6z7p:A (4.8) BS12 CA ? GO:0005509 ... P35828 31883796
    591143 6z7p:A (4.8) BS13 CA ? GO:0005509 ... P35828 31883796
    591144 6z7p:A (4.8) BS14 CA ? GO:0005509 ... P35828 31883796
    591145 6z7p:A (4.8) BS15 CA ? GO:0005509 ... P35828 31883796
    591146 6z7p:A (4.8) BS16 CA ? GO:0005509 ... P35828 31883796
    591147 6z7p:A (4.8) BS17 CA ? GO:0005509 ... P35828 31883796
    591148 6z7p:A (4.8) BS18 CA ? GO:0005509 ... P35828 31883796
    591149 6z7p:A (4.8) BS19 CA ? GO:0005509 ... P35828 31883796
    591150 6z7p:A (4.8) BS20 CA ? GO:0005509 ... P35828 31883796
    591151 6z7p:A (4.8) BS21 CA ? GO:0005509 ... P35828 31883796
    591152 6z7p:A (4.8) BS22 CA ? GO:0005509 ... P35828 31883796
    591153 6z7p:A (4.8) BS23 CA ? GO:0005509 ... P35828 31883796
    591154 6z7p:A (4.8) BS24 CA ? GO:0005509 ... P35828 31883796
    591155 6z7p:A (4.8) BS25 CA ? GO:0005509 ... P35828 31883796
    591156 6z7p:A (4.8) BS26 CA ? GO:0005509 ... P35828 31883796
    591157 6z7r:A (1.77) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591158 6z7r:A (1.77) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591159 6z7r:A (1.77) BS03 SF4 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591160 6z7r:A (1.77) BS04 6ML 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591161 6z7r:B (1.77) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591162 6z7r:B (1.77) BS02 6ML 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591163 6z7r:B (1.77) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591164 6z7r:B (1.77) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591165 6z7r:B (1.77) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591166 6z7r:C (1.77) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591167 6z7r:C (1.77) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591168 6z7r:C (1.77) BS03 SF4 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591169 6z7r:C (1.77) BS04 6ML 1.12.2.1 GO:0008901 ... Q72AS4 32865640
    591170 6z7r:D (1.77) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591171 6z7r:D (1.77) BS02 6ML 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591172 6z7r:D (1.77) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591173 6z7r:D (1.77) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591174 6z7r:D (1.77) BS05 FE2 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    591175 6z7t:A (1.88) BS01 MG ? GO:0003774 ... P08799 33049993
    591176 6z7t:B (1.88) BS01 MG ? GO:0003774 ... P08799 33049993
    591177 6z7t:B (1.88) BS02 MG ? GO:0003774 ... P08799 33049993
    591178 6z7u:A (2.58) BS01 ADP ? GO:0003774 ... P08799 33049993
    591179 6z7u:A (2.58) BS02 BIT ? GO:0003774 ... P08799 33049993 BindingDB: IC50=4900nM
    591180 6z7w:A (2.42) BS01 peptide N/A N/A N/A 33277949
    591181 6z7w:B (2.42) BS01 peptide N/A N/A N/A 33277949
    591182 6z7w:B (2.42) BS02 peptide N/A N/A N/A 33277949
    591183 6z7w:C (2.42) BS01 peptide N/A N/A N/A 33277949
    591184 6z7w:D (2.42) BS01 peptide N/A N/A N/A 33277949
    591185 6z7w:D (2.42) BS02 peptide N/A N/A N/A 33277949
    591186 6z7w:E (2.42) BS01 peptide N/A N/A N/A 33277949
    591187 6z7w:F (2.42) BS01 peptide N/A N/A N/A 33277949
    591188 6z7w:F (2.42) BS02 peptide N/A N/A N/A 33277949
    591189 6z7w:G (2.42) BS01 peptide N/A N/A N/A 33277949
    591190 6z7w:H (2.42) BS01 peptide N/A N/A N/A 33277949
    591191 6z7w:H (2.42) BS02 peptide N/A N/A N/A 33277949
    591192 6z7y:A (2.2) BS01 peptide N/A N/A N/A 33277949
    591193 6z7y:A (2.2) BS02 peptide N/A N/A N/A 33277949
    591194 6z7y:B (2.2) BS01 peptide N/A N/A N/A 33277949
    591195 6z7y:B (2.2) BS02 peptide N/A N/A N/A 33277949
    591196 6z7y:C (2.2) BS01 peptide N/A N/A N/A 33277949
    591197 6z7y:C (2.2) BS02 peptide N/A N/A N/A 33277949
    591198 6z7y:D (2.2) BS01 peptide N/A N/A N/A 33277949
    591199 6z7y:D (2.2) BS02 peptide N/A N/A N/A 33277949
    591200 6z7z:A (2.4) BS01 peptide N/A N/A N/A 33277949

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).