SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    59001 1vy5:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    59002 1vy5:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    59003 1vy5:B3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    59004 1vy5:B3 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 25132179
    59005 1vy5:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    59006 1vy5:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    59007 1vy5:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    59008 1vy5:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25132179
    59009 1vy5:B5 (2.55) BS03 MG ? GO:0003735 ... P80339 25132179
    59010 1vy5:B5 (2.55) BS04 ZN ? GO:0003735 ... P80339 25132179
    59011 1vy5:B6 (2.55) BS01 rna ? GO:0003735 ... P35871 25132179
    59012 1vy5:B6 (2.55) BS02 MG ? GO:0003735 ... P35871 25132179
    59013 1vy5:B6 (2.55) BS03 ZN ? GO:0003735 ... P35871 25132179
    59014 1vy5:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    59015 1vy5:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25132179
    59016 1vy5:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25132179
    59017 1vy5:B7 (2.55) BS04 MG ? GO:0003735 ... P80340 25132179
    59018 1vy5:B7 (2.55) BS05 MG ? GO:0003735 ... P80340 25132179
    59019 1vy5:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    59020 1vy5:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    59021 1vy5:B8 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 25132179
    59022 1vy5:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    59023 1vy5:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    59024 1vy5:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    59025 1vy5:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    59026 1vy5:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    59027 1vy5:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    59028 1vy5:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    59029 1vy5:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    59030 1vy5:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    59031 1vy5:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    59032 1vy5:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25132179
    59033 1vy5:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25132179
    59034 1vy5:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25132179
    59035 1vy5:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    59036 1vy5:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    59037 1vy5:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    59038 1vy5:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    59039 1vy5:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    59040 1vy5:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    59041 1vy5:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    59042 1vy5:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    59043 1vy5:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    59044 1vy5:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    59045 1vy5:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    59046 1vy5:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    59047 1vy5:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    59048 1vy5:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25132179
    59049 1vy5:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    59050 1vy5:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    59051 1vy5:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    59052 1vy5:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    59053 1vy5:BG (2.55) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    59054 1vy5:BH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    59055 1vy5:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    59056 1vy5:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    59057 1vy5:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25132179
    59058 1vy5:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25132179
    59059 1vy5:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25132179
    59060 1vy5:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    59061 1vy5:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    59062 1vy5:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    59063 1vy5:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    59064 1vy5:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    59065 1vy5:BQ (2.55) BS01 rna ? GO:0003735 ... P60489 25132179
    59066 1vy5:BQ (2.55) BS02 rna ? GO:0003735 ... P60489 25132179
    59067 1vy5:BQ (2.55) BS03 rna ? GO:0003735 ... P60489 25132179
    59068 1vy5:BQ (2.55) BS04 MG ? GO:0003735 ... P60489 25132179
    59069 1vy5:BQ (2.55) BS05 MG ? GO:0003735 ... P60489 25132179
    59070 1vy5:BQ (2.55) BS06 MG ? GO:0003735 ... P60489 25132179
    59071 1vy5:BQ (2.55) BS07 MG ? GO:0003735 ... P60489 25132179
    59072 1vy5:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    59073 1vy5:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    59074 1vy5:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    59075 1vy5:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    59076 1vy5:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    59077 1vy5:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    59078 1vy5:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    59079 1vy5:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    59080 1vy5:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    59081 1vy5:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    59082 1vy5:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    59083 1vy5:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25132179
    59084 1vy5:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25132179
    59085 1vy5:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25132179
    59086 1vy5:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25132179
    59087 1vy5:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    59088 1vy5:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    59089 1vy5:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    59090 1vy5:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    59091 1vy5:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25132179
    59092 1vy5:BV (2.55) BS06 MG ? GO:0003723 ... P60492 25132179
    59093 1vy5:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    59094 1vy5:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    59095 1vy5:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    59096 1vy5:BW (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 25132179
    59097 1vy5:BX (2.55) BS01 rna ? GO:0003735 ... Q5SHP0 25132179
    59098 1vy5:BX (2.55) BS02 MG ? GO:0003735 ... Q5SHP0 25132179
    59099 1vy5:BX (2.55) BS03 MG ? GO:0003735 ... Q5SHP0 25132179
    59100 1vy5:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    59101 1vy5:BY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    59102 1vy5:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    59103 1vy5:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    59104 1vy5:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    59105 1vy5:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    59106 1vy5:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    59107 1vy5:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    59108 1vy5:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    59109 1vy5:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    59110 1vy5:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    59111 1vy5:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    59112 1vy5:CG (2.55) BS01 rna ? GO:0000049 ... P17291 25132179
    59113 1vy5:CG (2.55) BS02 rna ? GO:0000049 ... P17291 25132179
    59114 1vy5:CH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    59115 1vy5:CI (2.55) BS01 rna ? GO:0003723 ... P80374 25132179
    59116 1vy5:CI (2.55) BS02 rna ? GO:0003723 ... P80374 25132179
    59117 1vy5:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    59118 1vy5:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    59119 1vy5:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    59120 1vy5:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    59121 1vy5:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    59122 1vy5:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    59123 1vy5:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    59124 1vy5:CN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    59125 1vy5:CN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    59126 1vy5:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    59127 1vy5:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    59128 1vy5:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    59129 1vy5:CQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    59130 1vy5:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    59131 1vy5:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    59132 1vy5:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    59133 1vy5:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25132179
    59134 1vy5:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    59135 1vy5:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    59136 1vy5:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    59137 1vy5:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    59138 1vy5:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    59139 1vy5:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    59140 1vy5:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    59141 1vy5:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    59142 1vy5:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    59143 1vy5:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    59144 1vy5:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25132179
    59145 1vy5:D6 (2.55) BS01 rna ? GO:0003735 ... P35871 25132179
    59146 1vy5:D6 (2.55) BS02 ZN ? GO:0003735 ... P35871 25132179
    59147 1vy5:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    59148 1vy5:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    59149 1vy5:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    59150 1vy5:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    59151 1vy5:DD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    59152 1vy5:DD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    59153 1vy5:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    59154 1vy5:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    59155 1vy5:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    59156 1vy5:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    59157 1vy5:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    59158 1vy5:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    59159 1vy5:DE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    59160 1vy5:DE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    59161 1vy5:DF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    59162 1vy5:DF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    59163 1vy5:DF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    59164 1vy5:DF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    59165 1vy5:DF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    59166 1vy5:DG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    59167 1vy5:DG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    59168 1vy5:DG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    59169 1vy5:DG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    59170 1vy5:DH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    59171 1vy5:DI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    59172 1vy5:DN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    59173 1vy5:DO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    59174 1vy5:DO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    59175 1vy5:DP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    59176 1vy5:DP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    59177 1vy5:DQ (2.55) BS01 rna ? GO:0003735 ... P60489 25132179
    59178 1vy5:DQ (2.55) BS02 rna ? GO:0003735 ... P60489 25132179
    59179 1vy5:DQ (2.55) BS03 rna ? GO:0003735 ... P60489 25132179
    59180 1vy5:DQ (2.55) BS04 MG ? GO:0003735 ... P60489 25132179
    59181 1vy5:DQ (2.55) BS05 MG ? GO:0003735 ... P60489 25132179
    59182 1vy5:DQ (2.55) BS06 MG ? GO:0003735 ... P60489 25132179
    59183 1vy5:DR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    59184 1vy5:DS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    59185 1vy5:DS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    59186 1vy5:DT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    59187 1vy5:DT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    59188 1vy5:DU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    59189 1vy5:DU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    59190 1vy5:DU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    59191 1vy5:DU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    59192 1vy5:DV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    59193 1vy5:DV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    59194 1vy5:DV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    59195 1vy5:DV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    59196 1vy5:DW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    59197 1vy5:DW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    59198 1vy5:DW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    59199 1vy5:DX (2.55) BS01 rna ? GO:0003735 ... Q5SHP0 25132179
    59200 1vy5:DY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).