SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    593001 6zj3:Lj (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593002 6zj3:Lk (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593003 6zj3:Lk (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593004 6zj3:Lk (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593005 6zj3:Lk (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    593006 6zj3:Lk (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    593007 6zj3:Lk (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    593008 6zj3:Ll (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593009 6zj3:Ll (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    593010 6zj3:Lm (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593011 6zj3:Lm (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593012 6zj3:Lm (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593013 6zj3:Ln (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593014 6zj3:Ln (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593015 6zj3:Ln (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593016 6zj3:Lo (3.15) BS01 rna N/A N/A N/A 33091122
    593017 6zj3:Lp (3.15) BS01 rna N/A GO:0000463 ... N/A 33091122
    593018 6zj3:Lp (3.15) BS02 rna N/A GO:0000463 ... N/A 33091122
    593019 6zj3:Lp (3.15) BS03 rna N/A GO:0000463 ... N/A 33091122
    593020 6zj3:Lq (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593021 6zj3:Lq (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593022 6zj3:Lq (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593023 6zj3:Lr (3.15) BS01 rna N/A GO:0000463 ... N/A 33091122
    593024 6zj3:Lr (3.15) BS02 rna N/A GO:0000463 ... N/A 33091122
    593025 6zj3:Lr (3.15) BS03 rna N/A GO:0000463 ... N/A 33091122
    593026 6zj3:Lr (3.15) BS04 rna N/A GO:0000463 ... N/A 33091122
    593027 6zj3:Ls (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593028 6zj3:Ls (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    593029 6zj3:Lt (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593030 6zj3:Lt (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593031 6zj3:Lt (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593032 6zj3:Lt (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    593033 6zj3:Lt (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    593034 6zj3:Lu (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593035 6zj3:Lu (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593036 6zj3:Lu (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593037 6zj3:Lv (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593038 6zj3:Lv (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593039 6zj3:Lv (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593040 6zj3:Lv (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    593041 6zj3:Lv (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    593042 6zj3:Lv (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    593043 6zj3:Lw (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593044 6zj3:Lw (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593045 6zj3:Lw (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593046 6zj3:Lw (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    593047 6zj3:Lw (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    593048 6zj3:Lx (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593049 6zj3:Lx (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593050 6zj3:Lx (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593051 6zj3:Ly (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593052 6zj3:Ly (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593053 6zj3:Ly (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593054 6zj3:Ly (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    593055 6zj3:Ly (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    593056 6zj3:Ly (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    593057 6zj3:Ly (3.15) BS07 ZN N/A GO:0003735 ... N/A 33091122
    593058 6zj3:Lz (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593059 6zj3:SA (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593060 6zj3:SA (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593061 6zj3:SA (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    593062 6zj3:SB (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593063 6zj3:SC (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593064 6zj3:SD (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593065 6zj3:SE (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593066 6zj3:SF (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593067 6zj3:SG (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593068 6zj3:SH (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593069 6zj3:SH (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593070 6zj3:SI (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593071 6zj3:SJ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593072 6zj3:SK (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593073 6zj3:SL (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593074 6zj3:SM (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593075 6zj3:SN (3.15) BS01 rna N/A N/A N/A 33091122
    593076 6zj3:SO (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593077 6zj3:SO (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593078 6zj3:SP (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593079 6zj3:SP (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593080 6zj3:SQ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593081 6zj3:SR (3.15) BS01 rna N/A GO:0003676 ... N/A 33091122
    593082 6zj3:SS (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593083 6zj3:ST (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593084 6zj3:ST (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593085 6zj3:SU (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593086 6zj3:SV (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593087 6zj3:SW (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    593088 6zj3:SW (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    593089 6zj3:SX (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593090 6zj3:SZ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593091 6zj3:Sa (3.15) BS01 rna N/A N/A N/A 33091122
    593092 6zj3:Sa (3.15) BS02 rna N/A N/A N/A 33091122
    593093 6zj3:Sb (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593094 6zj3:Sb (3.15) BS02 ZN N/A GO:0003735 ... N/A 33091122
    593095 6zj3:Sc (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593096 6zj3:Sd (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593097 6zj3:Se (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593098 6zj3:Se (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    593099 6zj3:Sf (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    593100 6zj3:Sg (3.15) BS01 rna N/A GO:0003676 ... N/A 33091122
    593101 6zj3:Sh (3.15) BS01 rna N/A GO:0043022 ... N/A 33091122
    593102 6zj5:AAA (2.269) BS01 TEW 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    593103 6zj5:AAA (2.269) BS02 TEW 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    593104 6zj5:AAA (2.269) BS03 DMJ 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    593105 6zj5:AAA (2.269) BS04 GLC 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    593106 6zj6:AAA (1.09) BS01 IFM ? GO:0004559 ... D6D1V7 33154157
    593107 6zj6:AAA (1.09) BS02 GLC ? GO:0004559 ... D6D1V7 33154157
    593108 6zj9:A (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593109 6zja:B (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593110 6zja:D (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593111 6zja:F (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593112 6zja:H (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593113 6zja:J (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593114 6zja:L (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593115 6zja:N (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593116 6zja:P (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593117 6zja:R (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593118 6zja:T (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593119 6zja:V (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593120 6zja:X (2.0) BS01 DJM 3.5.1.5 GO:0005515 ... P69996 33431861
    593121 6zjb:A (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593122 6zjb:B (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593123 6zjb:C (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593124 6zjb:D (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593125 6zjb:E (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593126 6zjb:F (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593127 6zjc:A (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593128 6zjc:A (2.2) BS02 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593129 6zjc:A (2.2) BS03 QLT 2.5.1.18 GO:0004364 ... M9ZT87 33162212 MOAD: ic50=9.6uM
    593130 6zjc:B (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593131 6zjc:B (2.2) BS02 QLT 2.5.1.18 GO:0004364 ... M9ZT87 33162212 MOAD: ic50=9.6uM
    593132 6zjc:B (2.2) BS03 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593133 6zjc:C (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593134 6zjc:C (2.2) BS02 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593135 6zjc:C (2.2) BS03 QLT 2.5.1.18 GO:0004364 ... M9ZT87 33162212 MOAD: ic50=9.6uM
    593136 6zjc:D (2.2) BS01 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593137 6zjc:D (2.2) BS02 QLT 2.5.1.18 GO:0004364 ... M9ZT87 33162212 MOAD: ic50=9.6uM
    593138 6zjc:D (2.2) BS03 GSH 2.5.1.18 GO:0004364 ... M9ZT87 33162212
    593139 6zjd:A (1.75) BS01 ATP 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537 MOAD: Kd=13uM
    593140 6zje:A (1.48) BS01 AP5 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    593141 6zjf:A (1.75) BS01 QM2 2.7.11.1 GO:0004672 ... O94768 33215924
    593142 6zjg:HHH (2.45) BS01 peptide N/A N/A N/A N/A
    593143 6zjg:LLL (2.45) BS01 peptide N/A N/A N/A N/A
    593144 6zjh:AAA (2.1) BS01 GLC ? GO:0006006 ... F2L613 32953231
    593145 6zjh:AAA (2.1) BS02 GLC ? GO:0006006 ... F2L613 32953231
    593146 6zji:AP1 (3.7) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 N/A
    593147 6zji:BP1 (3.7) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 N/A
    593148 6zjk:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593149 6zjk:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593150 6zjk:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593151 6zjk:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593152 6zjk:C (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593153 6zjk:C (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593154 6zjk:D (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593155 6zjk:D (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    593156 6zjl:1 (4.3) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    593157 6zjl:1 (4.3) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    593158 6zjl:2 (4.3) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    593159 6zjl:3 (4.3) BS01 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    593160 6zjl:3 (4.3) BS02 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    593161 6zjl:3 (4.3) BS03 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    593162 6zjl:3 (4.3) BS04 FES 7.1.1.- GO:0005886 ... Q56223 32811817
    593163 6zjl:6 (4.3) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    593164 6zjl:9 (4.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    593165 6zjl:9 (4.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    593166 6zjm:B (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    593167 6zjm:D (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    593168 6zjm:F (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    593169 6zjm:H (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    593170 6zjn:1 (6.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    593171 6zjn:2 (6.1) BS01 FES 7.1.1.- GO:0003954 ... Q56221 32811817
    593172 6zjn:3 (6.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    593173 6zjn:3 (6.1) BS02 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    593174 6zjn:3 (6.1) BS03 SF4 7.1.1.- GO:0005886 ... Q56223 32811817
    593175 6zjn:3 (6.1) BS04 FES 7.1.1.- GO:0005886 ... Q56223 32811817
    593176 6zjn:6 (6.1) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    593177 6zjn:9 (6.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    593178 6zjn:9 (6.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    593179 6zjo:A (2.01) BS01 ZN 3.6.1.- GO:0003924 ... Q9KX08 34749534
    593180 6zjo:B (2.01) BS01 ZN 3.6.1.- GO:0003924 ... Q9KX08 34749534
    593181 6zjo:B (2.01) BS02 PO4 3.6.1.- GO:0003924 ... Q9KX08 34749534
    593182 6zjq:A (1.7) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593183 6zjq:A (1.7) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593184 6zjr:A (2.0) BS01 FRU 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593185 6zjr:A (2.0) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593186 6zjr:A (2.0) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593187 6zjs:A (1.5) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593188 6zjs:A (1.5) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593189 6zjs:A (1.5) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593190 6zjs:A (1.5) BS04 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593191 6zjs:A (1.5) BS05 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593192 6zjt:A (1.97) BS01 FRU 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593193 6zjt:A (1.97) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593194 6zjt:A (1.97) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593195 6zjt:A (1.97) BS04 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593196 6zjt:A (1.97) BS05 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593197 6zju:A (1.75) BS01 GLC 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593198 6zju:A (1.75) BS02 FRU 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593199 6zju:A (1.75) BS03 GLC 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412
    593200 6zju:A (1.75) BS04 FRU 3.2.1.23 GO:0003824 ... A0A023UGN9 32731412

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).