SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    593601 6zks:3 (3.1) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593602 6zks:3 (3.1) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    593603 6zks:3 (3.1) BS03 FES N/A GO:0008137 ... N/A 32972993
    593604 6zks:4 (3.1) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    593605 6zks:6 (3.1) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593606 6zks:9 (3.1) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    593607 6zks:9 (3.1) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    593608 6zks:X (3.1) BS01 ZMP ? GO:0000035 ... W5NQT7 32972993
    593609 6zks:b (3.1) BS01 ZN N/A GO:0006120 ... N/A 32972993
    593610 6zks:d (3.1) BS01 NDP N/A N/A N/A 32972993
    593611 6zks:g (3.1) BS01 ZMP ? GO:0005739 ... W5QC06 32972993
    593612 6zks:k (3.1) BS01 AMP N/A GO:0006120 ... N/A 32972993
    593613 6zks:t (3.1) BS01 ZMP N/A GO:0006120 ... N/A 32972993
    593614 6zkt:1 (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    593615 6zkt:1 (2.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    593616 6zkt:2 (2.8) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    593617 6zkt:3 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593618 6zkt:3 (2.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    593619 6zkt:3 (2.8) BS03 FES N/A GO:0008137 ... N/A 32972993
    593620 6zkt:4 (2.8) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    593621 6zkt:6 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593622 6zkt:9 (2.8) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    593623 6zkt:9 (2.8) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    593624 6zkt:X (2.8) BS01 ZMP ? GO:0000035 ... W5NQT7 32972993
    593625 6zkt:b (2.8) BS01 ZN N/A GO:0006120 ... N/A 32972993
    593626 6zkt:d (2.8) BS01 NDP N/A N/A N/A 32972993
    593627 6zkt:g (2.8) BS01 ZMP ? GO:0005739 ... W5QC06 32972993
    593628 6zkt:k (2.8) BS01 AMP N/A GO:0006120 ... N/A 32972993
    593629 6zkt:t (2.8) BS01 ZMP N/A GO:0006120 ... N/A 32972993
    593630 6zku:1 (3.0) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    593631 6zku:1 (3.0) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    593632 6zku:2 (3.0) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    593633 6zku:3 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593634 6zku:3 (3.0) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    593635 6zku:3 (3.0) BS03 FES N/A GO:0008137 ... N/A 32972993
    593636 6zku:4 (3.0) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    593637 6zku:6 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593638 6zku:9 (3.0) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    593639 6zku:9 (3.0) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    593640 6zku:M (3.0) BS01 peptide 7.1.1.2 GO:0003954 ... O78755 32972993
    593641 6zku:N (3.0) BS01 peptide 7.1.1.2 GO:0005739 ... O78748 32972993
    593642 6zku:W (3.0) BS01 peptide N/A N/A N/A 32972993
    593643 6zku:X (3.0) BS01 ZMP ? GO:0000035 ... W5NQT7 32972993
    593644 6zku:b (3.0) BS01 ZN N/A GO:0006120 ... N/A 32972993
    593645 6zku:d (3.0) BS01 NDP N/A N/A N/A 32972993
    593646 6zku:g (3.0) BS01 ZMP ? GO:0005739 ... W5QC06 32972993
    593647 6zku:k (3.0) BS01 AMP N/A GO:0006120 ... N/A 32972993
    593648 6zku:t (3.0) BS01 ZMP N/A GO:0006120 ... N/A 32972993
    593649 6zkv:1 (2.9) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    593650 6zkv:1 (2.9) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    593651 6zkv:2 (2.9) BS01 FES 7.1.1.2 GO:0003954 ... W5NRY1 32972993
    593652 6zkv:3 (2.9) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593653 6zkv:3 (2.9) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    593654 6zkv:3 (2.9) BS03 FES N/A GO:0008137 ... N/A 32972993
    593655 6zkv:4 (2.9) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    593656 6zkv:6 (2.9) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    593657 6zkv:9 (2.9) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    593658 6zkv:9 (2.9) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    593659 6zkv:M (2.9) BS01 peptide 7.1.1.2 GO:0003954 ... O78755 32972993
    593660 6zkv:N (2.9) BS01 peptide 7.1.1.2 GO:0005739 ... O78748 32972993
    593661 6zkv:W (2.9) BS01 peptide N/A N/A N/A 32972993
    593662 6zkv:b (2.9) BS01 ZN N/A GO:0006120 ... N/A 32972993
    593663 6zkv:d (2.9) BS01 NDP N/A N/A N/A 32972993
    593664 6zkv:g (2.9) BS01 ZMP ? GO:0005739 ... W5QC06 32972993
    593665 6zkv:k (2.9) BS01 AMP N/A GO:0006120 ... N/A 32972993
    593666 6zkv:t (2.9) BS01 ZMP N/A GO:0006120 ... N/A 32972993
    593667 6zkw:A (2.26) BS01 peptide ? N/A P13747 35108401
    593668 6zkw:D (2.26) BS01 peptide N/A N/A N/A 35108401
    593669 6zkx:A (2.17) BS01 peptide ? N/A P13747 35108401
    593670 6zkx:D (2.17) BS01 peptide N/A N/A N/A 35108401
    593671 6zky:A (2.65) BS01 peptide ? N/A P13747 35108401
    593672 6zky:D (2.65) BS01 peptide N/A N/A N/A 35108401
    593673 6zkz:A (2.3) BS01 peptide ? N/A P13747 35108401
    593674 6zkz:D (2.3) BS01 peptide N/A N/A N/A 35108401
    593675 6zl3:A (2.031) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 32779487
    593676 6zl3:A (2.031) BS02 EZZ 3.6.5.2 GO:0003924 ... P01112 32779487
    593677 6zl4:A (3.0) BS01 QM5 ? GO:0005886 ... Q5JID0 33449695
    593678 6zl4:A (3.0) BS02 DMU ? GO:0005886 ... Q5JID0 33449695
    593679 6zl4:B (3.0) BS01 QM5 ? GO:0005886 ... Q5JID0 33449695
    593680 6zl4:B (3.0) BS02 DMU ? GO:0005886 ... Q5JID0 33449695
    593681 6zl4:C (3.0) BS01 QM5 ? GO:0005886 ... Q5JID0 33449695
    593682 6zl4:C (3.0) BS02 DMU ? GO:0005886 ... Q5JID0 33449695
    593683 6zl5:A (1.645) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32779487
    593684 6zl5:A (1.645) BS02 F0K 3.6.5.2 GO:0003924 ... P01116 32779487 MOAD: Kd=2uM
    593685 6zl6:A (1.7) BS01 UDP N/A N/A N/A 32661196
    593686 6zl6:A (1.7) BS02 NAD N/A N/A N/A 32661196
    593687 6zl6:B (1.7) BS01 UDP N/A N/A N/A 32661196
    593688 6zl6:B (1.7) BS02 NAD N/A N/A N/A 32661196
    593689 6zl7:A (1.5) BS01 MG 3.1.1.3 GO:0004806 ... A0A142J6I6 N/A
    593690 6zl7:B (1.5) BS01 MG 3.1.1.3 GO:0004806 ... A0A142J6I6 N/A
    593691 6zla:A (2.2) BS01 NAD N/A N/A N/A 32661196
    593692 6zla:B (2.2) BS01 NAD N/A N/A N/A 32661196
    593693 6zla:C (2.2) BS01 NAD N/A N/A N/A 32661196
    593694 6zla:D (2.2) BS01 NAD N/A N/A N/A 32661196
    593695 6zlb:A (1.9) BS01 FAD 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    593696 6zlb:A (1.9) BS02 FXK 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    593697 6zlc:A (2.3) BS01 rna ? GO:0003723 ... Q1PST0 32867106
    593698 6zlc:A (2.3) BS02 rna ? GO:0003723 ... Q1PST0 32867106
    593699 6zlc:B (2.3) BS01 rna ? GO:0003723 ... Q1PST0 32867106
    593700 6zlc:B (2.3) BS02 rna ? GO:0003723 ... Q1PST0 32867106
    593701 6zld:A (1.8) BS01 NAD N/A N/A N/A 32661196
    593702 6zld:A (1.8) BS02 UGA N/A N/A N/A 32661196
    593703 6zld:B (1.8) BS01 NAD N/A N/A N/A 32661196
    593704 6zld:B (1.8) BS02 UGA N/A N/A N/A 32661196
    593705 6zlf:A (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593706 6zlf:A (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593707 6zlf:F (1.8) BS01 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593708 6zlf:F (1.8) BS02 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593709 6zlf:G (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593710 6zlf:G (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593711 6zlf:H (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593712 6zlf:H (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593713 6zlf:I (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593714 6zlf:I (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593715 6zlf:J (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593716 6zlf:J (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593717 6zlf:K (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593718 6zlf:K (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593719 6zlf:L (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    593720 6zlf:L (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    593721 6zlh:A (2.8) BS01 QM5 ? GO:0005886 ... Q5JID0 33449695
    593722 6zlh:A (2.8) BS02 DMU ? GO:0005886 ... Q5JID0 33449695
    593723 6zlh:B (2.8) BS01 QM5 ? GO:0005886 ... Q5JID0 33449695
    593724 6zlh:B (2.8) BS02 DMU ? GO:0005886 ... Q5JID0 33449695
    593725 6zlh:C (2.8) BS01 QM5 ? GO:0005886 ... Q5JID0 33449695
    593726 6zlh:C (2.8) BS02 DMU ? GO:0005886 ... Q5JID0 33449695
    593727 6zli:A (1.73) BS01 MG 3.6.5.2 GO:0003924 ... P01116 32779487
    593728 6zli:B (1.73) BS01 MG 3.6.5.2 GO:0003924 ... P01116 32779487
    593729 6zli:B (1.73) BS02 QME 3.6.5.2 GO:0003924 ... P01116 32779487
    593730 6zlj:A (1.7) BS01 NAD N/A N/A N/A 32661196
    593731 6zlj:A (1.7) BS02 UGF N/A N/A N/A 32661196
    593732 6zlj:B (1.7) BS01 NAD N/A N/A N/A 32661196
    593733 6zlj:B (1.7) BS02 UGF N/A N/A N/A 32661196
    593734 6zlk:A (1.5) BS01 NAD N/A N/A N/A 32661196
    593735 6zlk:A (1.5) BS02 UGA N/A N/A N/A 32661196
    593736 6zlk:A (1.5) BS03 UGB N/A N/A N/A 32661196
    593737 6zlk:B (1.5) BS01 NAD N/A N/A N/A 32661196
    593738 6zlk:B (1.5) BS02 UGA N/A N/A N/A 32661196
    593739 6zlk:B (1.5) BS03 UGB N/A N/A N/A 32661196
    593740 6zlk:C (1.5) BS01 NAD N/A N/A N/A 32661196
    593741 6zlk:C (1.5) BS02 UGA N/A N/A N/A 32661196
    593742 6zlk:C (1.5) BS03 UGB N/A N/A N/A 32661196
    593743 6zlk:D (1.5) BS01 NAD N/A N/A N/A 32661196
    593744 6zlk:D (1.5) BS02 UGA N/A N/A N/A 32661196
    593745 6zlk:D (1.5) BS03 UGB N/A N/A N/A 32661196
    593746 6zll:A (1.85) BS01 UGB N/A N/A N/A 32661196
    593747 6zll:A (1.85) BS02 NAD N/A N/A N/A 32661196
    593748 6zll:B (1.85) BS01 UGB N/A N/A N/A 32661196
    593749 6zll:B (1.85) BS02 NAD N/A N/A N/A 32661196
    593750 6zll:C (1.85) BS01 UGB N/A N/A N/A 32661196
    593751 6zll:C (1.85) BS02 NAD N/A N/A N/A 32661196
    593752 6zll:D (1.85) BS01 UGB N/A N/A N/A 32661196
    593753 6zll:D (1.85) BS02 NAD N/A N/A N/A 32661196
    593754 6zln:A (1.7) BS01 PKB 2.7.12.1 GO:0004672 ... P49759 32787076 MOAD: Ki=0.036uM
    593755 6zlp:A (2.15) BS01 FAD 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    593756 6zlp:A (2.15) BS02 BTE 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    593757 6zlp:A (2.15) BS03 CA 1.8.1.9 GO:0000166 ... A0A3Q0KFL1 33950676
    593758 6zlq:A (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593759 6zlq:C (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593760 6zlq:D (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593761 6zlq:E (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593762 6zlq:I (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593763 6zlq:J (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593764 6zlq:K (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593765 6zlq:L (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593766 6zlq:M (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593767 6zlq:N (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593768 6zlq:O (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593769 6zlq:S (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593770 6zlq:V (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    593771 6zlw:B (2.6) BS01 rna ? GO:0000028 ... P08865 32680882
    593772 6zlw:C (2.6) BS01 rna ? GO:0002181 ... P61247 32680882
    593773 6zlw:D (2.6) BS01 rna ? GO:0002181 ... P15880 32680882
    593774 6zlw:E (2.6) BS01 rna ? GO:0002181 ... P62701 32680882
    593775 6zlw:F (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    593776 6zlw:G (2.6) BS01 rna ? GO:0000082 ... P62753 32680882
    593777 6zlw:H (2.6) BS01 rna ? GO:0001843 ... P62081 32680882
    593778 6zlw:I (2.6) BS01 rna ? GO:0000462 ... P62241 32680882
    593779 6zlw:J (2.6) BS01 rna ? GO:0002181 ... P46781 32680882
    593780 6zlw:K (2.6) BS01 rna ? GO:0000028 ... P46782 32680882
    593781 6zlw:L (2.6) BS01 rna ? GO:0002181 ... P62280 32680882
    593782 6zlw:M (2.6) BS01 rna ? GO:0002181 ... P46783 32680882
    593783 6zlw:N (2.6) BS01 rna ? GO:0002181 ... P62277 32680882
    593784 6zlw:O (2.6) BS01 rna ? GO:0002181 ... P25398 32680882
    593785 6zlw:P (2.6) BS01 rna ? GO:0000028 ... P62263 32680882
    593786 6zlw:Q (2.6) BS01 rna ? GO:0000028 ... P62841 32680882
    593787 6zlw:R (2.6) BS01 rna ? GO:0000462 ... P62249 32680882
    593788 6zlw:S (2.6) BS01 rna ? GO:0002181 ... P08708 32680882
    593789 6zlw:T (2.6) BS01 rna ? GO:0002181 ... P62269 32680882
    593790 6zlw:U (2.6) BS01 rna ? GO:0000028 ... P39019 32680882
    593791 6zlw:V (2.6) BS01 rna ? GO:0002181 ... P60866 32680882
    593792 6zlw:W (2.6) BS01 rna ? GO:0002181 ... P62244 32680882
    593793 6zlw:X (2.6) BS01 rna ? GO:0002181 ... P62266 32680882
    593794 6zlw:Y (2.6) BS01 rna ? GO:0002181 ... P62847 32680882
    593795 6zlw:a (2.6) BS01 rna ? GO:0002181 ... P62851 32680882
    593796 6zlw:b (2.6) BS01 rna ? GO:0000028 ... P42677 32680882
    593797 6zlw:c (2.6) BS01 rna ? GO:0002181 ... P62854 32680882
    593798 6zlw:c (2.6) BS02 ZN ? GO:0002181 ... P62854 32680882
    593799 6zlw:d (2.6) BS01 rna ? GO:0000028 ... P62857 32680882
    593800 6zlw:e (2.6) BS01 rna ? GO:0003735 ... P62861 32680882

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).