SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    59201 1vy5:DY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    59202 1vy5:DZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    59203 1vy5:DZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    59204 1vy6:AB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    59205 1vy6:AC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    59206 1vy6:AD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    59207 1vy6:AD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    59208 1vy6:AE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    59209 1vy6:AF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    59210 1vy6:AG (2.9) BS01 rna ? GO:0000049 ... P17291 25132179
    59211 1vy6:AH (2.9) BS01 rna N/A GO:0003735 ... P0DOY9 25132179
    59212 1vy6:AI (2.9) BS01 rna ? GO:0003723 ... P80374 25132179
    59213 1vy6:AI (2.9) BS02 rna ? GO:0003723 ... P80374 25132179
    59214 1vy6:AJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    59215 1vy6:AK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    59216 1vy6:AK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    59217 1vy6:AL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    59218 1vy6:AL (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    59219 1vy6:AL (2.9) BS03 MG ? GO:0000049 ... Q5SHN3 25132179
    59220 1vy6:AM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    59221 1vy6:AM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    59222 1vy6:AM (2.9) BS03 MG ? GO:0000049 ... P80377 25132179
    59223 1vy6:AN (2.9) BS01 rna N/A GO:0003735 ... P0DOY6 25132179
    59224 1vy6:AN (2.9) BS02 ZN N/A GO:0003735 ... P0DOY6 25132179
    59225 1vy6:AO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    59226 1vy6:AO (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    59227 1vy6:AP (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    59228 1vy6:AQ (2.9) BS01 rna N/A GO:0003735 ... P0DOY7 25132179
    59229 1vy6:AR (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    59230 1vy6:AS (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    59231 1vy6:AT (2.9) BS01 rna ? GO:0003723 ... P80380 25132179
    59232 1vy6:B0 (2.9) BS01 rna ? GO:0003735 ... P60493 25132179
    59233 1vy6:B0 (2.9) BS02 rna ? GO:0003735 ... P60493 25132179
    59234 1vy6:B0 (2.9) BS03 rna ? GO:0003735 ... P60493 25132179
    59235 1vy6:B0 (2.9) BS04 MG ? GO:0003735 ... P60493 25132179
    59236 1vy6:B0 (2.9) BS05 MG ? GO:0003735 ... P60493 25132179
    59237 1vy6:B1 (2.9) BS01 rna ? GO:0003735 ... P60494 25132179
    59238 1vy6:B2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    59239 1vy6:B3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    59240 1vy6:B3 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    59241 1vy6:B4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    59242 1vy6:B4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    59243 1vy6:B5 (2.9) BS01 rna ? GO:0003735 ... P80339 25132179
    59244 1vy6:B5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    59245 1vy6:B5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    59246 1vy6:B6 (2.9) BS01 rna ? GO:0003735 ... P35871 25132179
    59247 1vy6:B6 (2.9) BS02 MG ? GO:0003735 ... P35871 25132179
    59248 1vy6:B6 (2.9) BS03 ZN ? GO:0003735 ... P35871 25132179
    59249 1vy6:B7 (2.9) BS01 rna ? GO:0003735 ... P80340 25132179
    59250 1vy6:B7 (2.9) BS02 MG ? GO:0003735 ... P80340 25132179
    59251 1vy6:B7 (2.9) BS03 MG ? GO:0003735 ... P80340 25132179
    59252 1vy6:B8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    59253 1vy6:B9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    59254 1vy6:B9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    59255 1vy6:BD (2.9) BS01 rna ? GO:0002181 ... P60405 25132179
    59256 1vy6:BD (2.9) BS02 MG ? GO:0002181 ... P60405 25132179
    59257 1vy6:BD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    59258 1vy6:BD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    59259 1vy6:BD (2.9) BS05 MG ? GO:0002181 ... P60405 25132179
    59260 1vy6:BD (2.9) BS06 MG ? GO:0002181 ... P60405 25132179
    59261 1vy6:BD (2.9) BS07 MG ? GO:0002181 ... P60405 25132179
    59262 1vy6:BE (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    59263 1vy6:BE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    59264 1vy6:BE (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    59265 1vy6:BF (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    59266 1vy6:BF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    59267 1vy6:BF (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    59268 1vy6:BF (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    59269 1vy6:BG (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    59270 1vy6:BG (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    59271 1vy6:BG (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    59272 1vy6:BG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    59273 1vy6:BG (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    59274 1vy6:BH (2.9) BS01 rna N/A GO:0002181 ... P0DOY8 25132179
    59275 1vy6:BI (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    59276 1vy6:BN (2.9) BS01 rna ? GO:0003729 ... P60488 25132179
    59277 1vy6:BN (2.9) BS02 MG ? GO:0003729 ... P60488 25132179
    59278 1vy6:BO (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    59279 1vy6:BO (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    59280 1vy6:BP (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    59281 1vy6:BP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    59282 1vy6:BP (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    59283 1vy6:BQ (2.9) BS01 rna ? GO:0003735 ... P60489 25132179
    59284 1vy6:BQ (2.9) BS02 rna ? GO:0003735 ... P60489 25132179
    59285 1vy6:BQ (2.9) BS03 MG ? GO:0003735 ... P60489 25132179
    59286 1vy6:BQ (2.9) BS04 MG ? GO:0003735 ... P60489 25132179
    59287 1vy6:BR (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    59288 1vy6:BR (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    59289 1vy6:BR (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    59290 1vy6:BS (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    59291 1vy6:BS (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    59292 1vy6:BT (2.9) BS01 rna ? GO:0003735 ... P60490 25132179
    59293 1vy6:BT (2.9) BS02 rna ? GO:0003735 ... P60490 25132179
    59294 1vy6:BU (2.9) BS01 rna ? GO:0000027 ... P60491 25132179
    59295 1vy6:BU (2.9) BS02 MG ? GO:0000027 ... P60491 25132179
    59296 1vy6:BV (2.9) BS01 rna ? GO:0003723 ... P60492 25132179
    59297 1vy6:BV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    59298 1vy6:BV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    59299 1vy6:BV (2.9) BS04 MG ? GO:0003723 ... P60492 25132179
    59300 1vy6:BV (2.9) BS05 MG ? GO:0003723 ... P60492 25132179
    59301 1vy6:BW (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    59302 1vy6:BW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    59303 1vy6:BW (2.9) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    59304 1vy6:BX (2.9) BS01 rna ? GO:0003735 ... Q5SHP0 25132179
    59305 1vy6:BY (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    59306 1vy6:BY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    59307 1vy6:BZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    59308 1vy6:BZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    59309 1vy6:CB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    59310 1vy6:CC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    59311 1vy6:CD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    59312 1vy6:CD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    59313 1vy6:CE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    59314 1vy6:CE (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    59315 1vy6:CE (2.9) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    59316 1vy6:CF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    59317 1vy6:CG (2.9) BS01 rna ? GO:0000049 ... P17291 25132179
    59318 1vy6:CH (2.9) BS01 rna N/A GO:0003735 ... P0DOY9 25132179
    59319 1vy6:CI (2.9) BS01 rna ? GO:0003723 ... P80374 25132179
    59320 1vy6:CI (2.9) BS02 rna ? GO:0003723 ... P80374 25132179
    59321 1vy6:CJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    59322 1vy6:CK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    59323 1vy6:CK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    59324 1vy6:CL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    59325 1vy6:CM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    59326 1vy6:CM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    59327 1vy6:CN (2.9) BS01 rna N/A GO:0003735 ... P0DOY6 25132179
    59328 1vy6:CN (2.9) BS02 ZN N/A GO:0003735 ... P0DOY6 25132179
    59329 1vy6:CO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    59330 1vy6:CO (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    59331 1vy6:CP (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    59332 1vy6:CQ (2.9) BS01 rna N/A GO:0003735 ... P0DOY7 25132179
    59333 1vy6:CR (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    59334 1vy6:CS (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    59335 1vy6:CT (2.9) BS01 rna ? GO:0003723 ... P80380 25132179
    59336 1vy6:CT (2.9) BS02 MG ? GO:0003723 ... P80380 25132179
    59337 1vy6:D0 (2.9) BS01 rna ? GO:0003735 ... P60493 25132179
    59338 1vy6:D0 (2.9) BS02 rna ? GO:0003735 ... P60493 25132179
    59339 1vy6:D0 (2.9) BS03 rna ? GO:0003735 ... P60493 25132179
    59340 1vy6:D1 (2.9) BS01 rna ? GO:0003735 ... P60494 25132179
    59341 1vy6:D1 (2.9) BS02 MG ? GO:0003735 ... P60494 25132179
    59342 1vy6:D2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    59343 1vy6:D3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    59344 1vy6:D3 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    59345 1vy6:D3 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    59346 1vy6:D4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    59347 1vy6:D4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    59348 1vy6:D5 (2.9) BS01 rna ? GO:0003735 ... P80339 25132179
    59349 1vy6:D5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    59350 1vy6:D5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    59351 1vy6:D5 (2.9) BS04 MG ? GO:0003735 ... P80339 25132179
    59352 1vy6:D6 (2.9) BS01 rna ? GO:0003735 ... P35871 25132179
    59353 1vy6:D6 (2.9) BS02 ZN ? GO:0003735 ... P35871 25132179
    59354 1vy6:D7 (2.9) BS01 rna ? GO:0003735 ... P80340 25132179
    59355 1vy6:D8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    59356 1vy6:D9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    59357 1vy6:D9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    59358 1vy6:DD (2.9) BS01 rna ? GO:0002181 ... P60405 25132179
    59359 1vy6:DD (2.9) BS02 rna ? GO:0002181 ... P60405 25132179
    59360 1vy6:DD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    59361 1vy6:DD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    59362 1vy6:DE (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    59363 1vy6:DE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    59364 1vy6:DF (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    59365 1vy6:DF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    59366 1vy6:DG (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    59367 1vy6:DG (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    59368 1vy6:DG (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    59369 1vy6:DG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    59370 1vy6:DH (2.9) BS01 rna N/A GO:0002181 ... P0DOY8 25132179
    59371 1vy6:DI (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    59372 1vy6:DN (2.9) BS01 rna ? GO:0003729 ... P60488 25132179
    59373 1vy6:DO (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    59374 1vy6:DO (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    59375 1vy6:DP (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    59376 1vy6:DP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    59377 1vy6:DQ (2.9) BS01 rna ? GO:0003735 ... P60489 25132179
    59378 1vy6:DQ (2.9) BS02 rna ? GO:0003735 ... P60489 25132179
    59379 1vy6:DQ (2.9) BS03 MG ? GO:0003735 ... P60489 25132179
    59380 1vy6:DQ (2.9) BS04 MG ? GO:0003735 ... P60489 25132179
    59381 1vy6:DQ (2.9) BS05 MG ? GO:0003735 ... P60489 25132179
    59382 1vy6:DR (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    59383 1vy6:DS (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    59384 1vy6:DS (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    59385 1vy6:DT (2.9) BS01 rna ? GO:0003735 ... P60490 25132179
    59386 1vy6:DT (2.9) BS02 rna ? GO:0003735 ... P60490 25132179
    59387 1vy6:DU (2.9) BS01 rna ? GO:0000027 ... P60491 25132179
    59388 1vy6:DV (2.9) BS01 rna ? GO:0003723 ... P60492 25132179
    59389 1vy6:DV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    59390 1vy6:DV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    59391 1vy6:DW (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    59392 1vy6:DW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    59393 1vy6:DX (2.9) BS01 rna ? GO:0003735 ... Q5SHP0 25132179
    59394 1vy6:DY (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    59395 1vy6:DY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    59396 1vy6:DZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    59397 1vy6:DZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    59398 1vy7:AB (2.8) BS01 rna ? GO:0003735 ... P80371 25132179
    59399 1vy7:AC (2.8) BS01 rna ? GO:0003676 ... P80372 25132179
    59400 1vy7:AD (2.8) BS01 rna ? GO:0003723 ... P80373 25132179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).