SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    594001 6zm6:j (2.59) BS01 rna ? GO:0003735 ... Q86TS9 33602856
    594002 6zm6:l (2.59) BS01 rna ? GO:0003723 ... Q6P161 33602856
    594003 6zm6:o (2.59) BS01 rna ? GO:0003735 ... Q9BQC6 33602856
    594004 6zm6:q (2.59) BS01 rna ? GO:0005515 ... Q8TAE8 33602856
    594005 6zm6:r (2.59) BS01 rna ? GO:0003735 ... Q9NVS2 33602856
    594006 6zm6:r (2.59) BS02 FES ? GO:0003735 ... Q9NVS2 33602856
    594007 6zm6:s (2.59) BS01 rna ? GO:0003723 ... Q9NP92 33602856
    594008 6zm7:CA (2.7) BS01 rna ? GO:0003676 ... Q9UQ80 32680882
    594009 6zm7:CE (2.7) BS01 rna ? GO:0003713 ... Q96CT7 32680882
    594010 6zm7:CE (2.7) BS02 rna ? GO:0003713 ... Q96CT7 32680882
    594011 6zm7:LA (2.7) BS01 rna ? GO:0002181 ... P62917 32680882
    594012 6zm7:LA (2.7) BS02 rna ? GO:0002181 ... P62917 32680882
    594013 6zm7:LA (2.7) BS03 MG ? GO:0002181 ... P62917 32680882
    594014 6zm7:LB (2.7) BS01 rna ? GO:0002181 ... P39023 32680882
    594015 6zm7:LC (2.7) BS01 rna ? GO:0002181 ... P36578 32680882
    594016 6zm7:LC (2.7) BS02 rna ? GO:0002181 ... P36578 32680882
    594017 6zm7:LD (2.7) BS01 rna ? GO:0000027 ... P46777 32680882
    594018 6zm7:LD (2.7) BS02 rna ? GO:0000027 ... P46777 32680882
    594019 6zm7:LE (2.7) BS01 rna ? GO:0002181 ... Q02878 32680882
    594020 6zm7:LF (2.7) BS01 rna ? GO:0000463 ... P18124 32680882
    594021 6zm7:LF (2.7) BS02 rna ? GO:0000463 ... P18124 32680882
    594022 6zm7:LG (2.7) BS01 rna ? GO:0000470 ... P62424 32680882
    594023 6zm7:LG (2.7) BS02 rna ? GO:0000470 ... P62424 32680882
    594024 6zm7:LH (2.7) BS01 rna ? GO:0002181 ... P32969 32680882
    594025 6zm7:LI (2.7) BS01 rna ? GO:0000027 ... Q96L21 32680882
    594026 6zm7:LI (2.7) BS02 rna ? GO:0000027 ... Q96L21 32680882
    594027 6zm7:LJ (2.7) BS01 rna ? GO:0000027 ... P62913 32680882
    594028 6zm7:LJ (2.7) BS02 rna ? GO:0000027 ... P62913 32680882
    594029 6zm7:LL (2.7) BS01 rna ? GO:0001824 ... P26373 32680882
    594030 6zm7:LL (2.7) BS02 rna ? GO:0001824 ... P26373 32680882
    594031 6zm7:LM (2.7) BS01 rna ? GO:0002181 ... P50914 32680882
    594032 6zm7:LN (2.7) BS01 rna ? GO:0002181 ... P61313 32680882
    594033 6zm7:LN (2.7) BS02 rna ? GO:0002181 ... P61313 32680882
    594034 6zm7:LO (2.7) BS01 rna ? GO:0002181 ... P40429 32680882
    594035 6zm7:LP (2.7) BS01 rna ? GO:0002181 ... P18621 32680882
    594036 6zm7:LP (2.7) BS02 rna ? GO:0002181 ... P18621 32680882
    594037 6zm7:LQ (2.7) BS01 rna ? GO:0002181 ... Q07020 32680882
    594038 6zm7:LR (2.7) BS01 rna ? GO:0002181 ... P84098 32680882
    594039 6zm7:LR (2.7) BS02 rna ? GO:0002181 ... P84098 32680882
    594040 6zm7:LS (2.7) BS01 rna ? GO:0002181 ... Q02543 32680882
    594041 6zm7:LS (2.7) BS02 rna ? GO:0002181 ... Q02543 32680882
    594042 6zm7:LT (2.7) BS01 rna ? GO:0002181 ... P46778 32680882
    594043 6zm7:LT (2.7) BS02 rna ? GO:0002181 ... P46778 32680882
    594044 6zm7:LU (2.7) BS01 rna ? GO:0002181 ... P35268 32680882
    594045 6zm7:LV (2.7) BS01 rna ? GO:0000122 ... P62829 32680882
    594046 6zm7:LV (2.7) BS02 rna ? GO:0000122 ... P62829 32680882
    594047 6zm7:LW (2.7) BS01 rna ? GO:0000027 ... P83731 32680882
    594048 6zm7:LW (2.7) BS02 rna ? GO:0000027 ... P83731 32680882
    594049 6zm7:LX (2.7) BS01 rna ? GO:0002181 ... P62750 32680882
    594050 6zm7:LX (2.7) BS02 rna ? GO:0002181 ... P62750 32680882
    594051 6zm7:LY (2.7) BS01 rna ? GO:0002181 ... P61254 32680882
    594052 6zm7:LY (2.7) BS02 rna ? GO:0002181 ... P61254 32680882
    594053 6zm7:LZ (2.7) BS01 rna ? GO:0002181 ... P61353 32680882
    594054 6zm7:La (2.7) BS01 rna ? GO:0002181 ... P46776 32680882
    594055 6zm7:Lb (2.7) BS01 rna ? GO:0002181 ... P47914 32680882
    594056 6zm7:Lc (2.7) BS01 rna ? GO:0002181 ... P62888 32680882
    594057 6zm7:Ld (2.7) BS01 rna ? GO:0002181 ... P62899 32680882
    594058 6zm7:Le (2.7) BS01 rna ? GO:0002181 ... P62910 32680882
    594059 6zm7:Le (2.7) BS02 MG ? GO:0002181 ... P62910 32680882
    594060 6zm7:Lf (2.7) BS01 rna ? GO:0000049 ... P18077 32680882
    594061 6zm7:Lg (2.7) BS01 rna ? GO:0002181 ... P49207 32680882
    594062 6zm7:Lg (2.7) BS02 MG ? GO:0002181 ... P49207 32680882
    594063 6zm7:Lg (2.7) BS03 ZN ? GO:0002181 ... P49207 32680882
    594064 6zm7:Lh (2.7) BS01 rna ? GO:0000463 ... P42766 32680882
    594065 6zm7:Lh (2.7) BS02 rna ? GO:0000463 ... P42766 32680882
    594066 6zm7:Li (2.7) BS01 rna ? GO:0002181 ... Q9Y3U8 32680882
    594067 6zm7:Lj (2.7) BS01 rna ? GO:0002181 ... P61927 32680882
    594068 6zm7:Lj (2.7) BS02 rna ? GO:0002181 ... P61927 32680882
    594069 6zm7:Lj (2.7) BS03 ZN ? GO:0002181 ... P61927 32680882
    594070 6zm7:Lk (2.7) BS01 rna ? GO:0001501 ... P63173 32680882
    594071 6zm7:Ll (2.7) BS01 rna ? GO:0002181 ... P62891 32680882
    594072 6zm7:Ll (2.7) BS02 rna ? GO:0002181 ... P62891 32680882
    594073 6zm7:Lm (2.7) BS01 rna ? GO:0002181 ... P62987 32680882
    594074 6zm7:Lm (2.7) BS02 ZN ? GO:0002181 ... P62987 32680882
    594075 6zm7:Lo (2.7) BS01 rna ? GO:0002181 ... P83881 32680882
    594076 6zm7:Lo (2.7) BS02 rna ? GO:0002181 ... P83881 32680882
    594077 6zm7:Lo (2.7) BS03 ZN ? GO:0002181 ... P83881 32680882
    594078 6zm7:Lp (2.7) BS01 rna ? GO:0002181 ... P61513 32680882
    594079 6zm7:Lp (2.7) BS02 ZN ? GO:0002181 ... P61513 32680882
    594080 6zm7:Lr (2.7) BS01 rna ? GO:0002181 ... P46779 32680882
    594081 6zm7:Ls (2.7) BS01 rna ? GO:0002181 ... P05388 32680882
    594082 6zm7:Lt (2.7) BS01 rna ? GO:0002181 ... P30050 32680882
    594083 6zm7:Lz (2.7) BS01 rna ? GO:0002181 ... P62906 32680882
    594084 6zm7:Lz (2.7) BS02 rna ? GO:0002181 ... P62906 32680882
    594085 6zm7:SA (2.7) BS01 rna ? GO:0000028 ... P08865 32680882
    594086 6zm7:SB (2.7) BS01 rna ? GO:0002181 ... P61247 32680882
    594087 6zm7:SC (2.7) BS01 rna ? GO:0002181 ... P15880 32680882
    594088 6zm7:SC (2.7) BS02 peptide ? GO:0002181 ... P15880 32680882
    594089 6zm7:SD (2.7) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    594090 6zm7:SE (2.7) BS01 rna ? GO:0002181 ... P62701 32680882
    594091 6zm7:SF (2.7) BS01 rna ? GO:0000028 ... P46782 32680882
    594092 6zm7:SF (2.7) BS02 rna ? GO:0000028 ... P46782 32680882
    594093 6zm7:SG (2.7) BS01 rna ? GO:0000082 ... P62753 32680882
    594094 6zm7:SH (2.7) BS01 rna ? GO:0001843 ... P62081 32680882
    594095 6zm7:SI (2.7) BS01 rna ? GO:0000462 ... P62241 32680882
    594096 6zm7:SI (2.7) BS02 rna ? GO:0000462 ... P62241 32680882
    594097 6zm7:SJ (2.7) BS01 rna ? GO:0002181 ... P46781 32680882
    594098 6zm7:SK (2.7) BS01 rna ? GO:0002181 ... P46783 32680882
    594099 6zm7:SL (2.7) BS01 rna ? GO:0002181 ... P62280 32680882
    594100 6zm7:SM (2.7) BS01 rna ? GO:0002181 ... P25398 32680882
    594101 6zm7:SN (2.7) BS01 rna ? GO:0002181 ... P62277 32680882
    594102 6zm7:SO (2.7) BS01 rna ? GO:0000028 ... P62263 32680882
    594103 6zm7:SP (2.7) BS01 rna ? GO:0000028 ... P62841 32680882
    594104 6zm7:SQ (2.7) BS01 rna ? GO:0000462 ... P62249 32680882
    594105 6zm7:SR (2.7) BS01 rna ? GO:0002181 ... P08708 32680882
    594106 6zm7:SS (2.7) BS01 rna ? GO:0002181 ... P62269 32680882
    594107 6zm7:ST (2.7) BS01 rna ? GO:0000028 ... P39019 32680882
    594108 6zm7:SU (2.7) BS01 rna ? GO:0002181 ... P60866 32680882
    594109 6zm7:SW (2.7) BS01 rna ? GO:0002181 ... P62244 32680882
    594110 6zm7:SX (2.7) BS01 rna ? GO:0002181 ... P62266 32680882
    594111 6zm7:SY (2.7) BS01 rna ? GO:0002181 ... P62847 32680882
    594112 6zm7:SZ (2.7) BS01 rna ? GO:0002181 ... P62851 32680882
    594113 6zm7:Sa (2.7) BS01 rna ? GO:0002181 ... P62854 32680882
    594114 6zm7:Sa (2.7) BS02 ZN ? GO:0002181 ... P62854 32680882
    594115 6zm7:Sb (2.7) BS01 rna ? GO:0000028 ... P42677 32680882
    594116 6zm7:Sc (2.7) BS01 rna ? GO:0000028 ... P62857 32680882
    594117 6zm7:Sd (2.7) BS01 rna ? GO:0002181 ... P62273 32680882
    594118 6zm7:Sd (2.7) BS02 ZN ? GO:0002181 ... P62273 32680882
    594119 6zm7:Se (2.7) BS01 rna ? GO:0003735 ... P62861 32680882
    594120 6zm7:Sf (2.7) BS01 rna ? GO:0002181 ... P62979 32680882
    594121 6zm7:Sf (2.7) BS02 ZN ? GO:0002181 ... P62979 32680882
    594122 6zm7:Sg (2.7) BS01 rna ? GO:0001891 ... P63244 32680882
    594123 6zm9:A (1.45) BS01 PRO N/A N/A N/A 33567250
    594124 6zm9:A (1.45) BS02 MTA N/A N/A N/A 33567250
    594125 6zma:B (2.15) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    594126 6zma:B (2.15) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    594127 6zma:B (2.15) BS03 CA ? GO:0006400 ... A0A179QS89 32785618
    594128 6zma:B (2.15) BS04 KR ? GO:0006400 ... A0A179QS89 32785618
    594129 6zma:B (2.15) BS05 KR ? GO:0006400 ... A0A179QS89 32785618
    594130 6zma:C (2.15) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    594131 6zma:C (2.15) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    594132 6zma:C (2.15) BS03 KR ? GO:0006400 ... A0A179QS89 32785618
    594133 6zma:C (2.15) BS04 KR ? GO:0006400 ... A0A179QS89 32785618
    594134 6zma:C (2.15) BS05 KR ? GO:0006400 ... A0A179QS89 32785618
    594135 6zma:C (2.15) BS06 KR ? GO:0006400 ... A0A179QS89 32785618
    594136 6zmb:B (1.7) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    594137 6zmb:B (1.7) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    594138 6zmb:B (1.7) BS03 CA ? GO:0006400 ... A0A179QS89 32785618
    594139 6zmb:C (1.7) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    594140 6zmb:C (1.7) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    594141 6zmc:B (2.5) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    594142 6zmc:B (2.5) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    594143 6zmc:B (2.5) BS03 CA ? GO:0006400 ... A0A179QS89 32785618
    594144 6zmc:C (2.5) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    594145 6zmc:C (2.5) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    594146 6zmc:C (2.5) BS03 AR ? GO:0006400 ... A0A179QS89 32785618
    594147 6zmd:A (2.64) BS01 ANP 3.6.4.10 GO:0005524 ... P11021 33893288
    594148 6zmd:A (2.64) BS02 MG 3.6.4.10 GO:0005524 ... P11021 33893288
    594149 6zmd:A (2.64) BS03 MG 3.6.4.10 GO:0005524 ... P11021 33893288
    594150 6zmd:A (2.64) BS04 PO4 3.6.4.10 GO:0005524 ... P11021 33893288
    594151 6zmd:B (2.64) BS01 QMK 2.7.7.108
    3.1.4.-
    N/A Q9BVA6 33893288
    594152 6zme:CA (3.0) BS01 rna ? GO:0003676 ... Q9UQ80 32680882
    594153 6zme:CA (3.0) BS02 rna ? GO:0003676 ... Q9UQ80 32680882
    594154 6zme:CE (3.0) BS01 rna ? GO:0003713 ... Q96CT7 32680882
    594155 6zme:CE (3.0) BS02 rna ? GO:0003713 ... Q96CT7 32680882
    594156 6zme:CH (3.0) BS01 rna ? GO:0000184 ... P62495 32680882
    594157 6zme:CI (3.0) BS01 rna 3.6.5.- GO:0003924 ... P61221 32680882
    594158 6zme:CI (3.0) BS02 rna 3.6.5.- GO:0003924 ... P61221 32680882
    594159 6zme:CI (3.0) BS03 SF4 3.6.5.- GO:0003924 ... P61221 32680882
    594160 6zme:CI (3.0) BS04 SF4 3.6.5.- GO:0003924 ... P61221 32680882
    594161 6zme:CI (3.0) BS05 ADP 3.6.5.- GO:0003924 ... P61221 32680882
    594162 6zme:LA (3.0) BS01 rna ? GO:0002181 ... P62917 32680882
    594163 6zme:LA (3.0) BS02 rna ? GO:0002181 ... P62917 32680882
    594164 6zme:LA (3.0) BS03 MG ? GO:0002181 ... P62917 32680882
    594165 6zme:LA (3.0) BS04 MG ? GO:0002181 ... P62917 32680882
    594166 6zme:LB (3.0) BS01 rna ? GO:0002181 ... P39023 32680882
    594167 6zme:LC (3.0) BS01 rna ? GO:0002181 ... P36578 32680882
    594168 6zme:LC (3.0) BS02 rna ? GO:0002181 ... P36578 32680882
    594169 6zme:LD (3.0) BS01 rna ? GO:0000027 ... P46777 32680882
    594170 6zme:LD (3.0) BS02 rna ? GO:0000027 ... P46777 32680882
    594171 6zme:LE (3.0) BS01 rna ? GO:0002181 ... Q02878 32680882
    594172 6zme:LF (3.0) BS01 rna ? GO:0000463 ... P18124 32680882
    594173 6zme:LF (3.0) BS02 rna ? GO:0000463 ... P18124 32680882
    594174 6zme:LG (3.0) BS01 rna ? GO:0000470 ... P62424 32680882
    594175 6zme:LG (3.0) BS02 rna ? GO:0000470 ... P62424 32680882
    594176 6zme:LH (3.0) BS01 rna ? GO:0002181 ... P32969 32680882
    594177 6zme:LI (3.0) BS01 rna ? GO:0000027 ... Q96L21 32680882
    594178 6zme:LI (3.0) BS02 rna ? GO:0000027 ... Q96L21 32680882
    594179 6zme:LJ (3.0) BS01 rna ? GO:0000027 ... P62913 32680882
    594180 6zme:LJ (3.0) BS02 rna ? GO:0000027 ... P62913 32680882
    594181 6zme:LL (3.0) BS01 rna ? GO:0001824 ... P26373 32680882
    594182 6zme:LL (3.0) BS02 rna ? GO:0001824 ... P26373 32680882
    594183 6zme:LM (3.0) BS01 rna ? GO:0002181 ... P50914 32680882
    594184 6zme:LN (3.0) BS01 rna ? GO:0002181 ... P61313 32680882
    594185 6zme:LN (3.0) BS02 rna ? GO:0002181 ... P61313 32680882
    594186 6zme:LO (3.0) BS01 rna ? GO:0002181 ... P40429 32680882
    594187 6zme:LP (3.0) BS01 rna ? GO:0002181 ... P18621 32680882
    594188 6zme:LP (3.0) BS02 rna ? GO:0002181 ... P18621 32680882
    594189 6zme:LQ (3.0) BS01 rna ? GO:0002181 ... Q07020 32680882
    594190 6zme:LR (3.0) BS01 rna ? GO:0002181 ... P84098 32680882
    594191 6zme:LR (3.0) BS02 rna ? GO:0002181 ... P84098 32680882
    594192 6zme:LS (3.0) BS01 rna ? GO:0002181 ... Q02543 32680882
    594193 6zme:LS (3.0) BS02 rna ? GO:0002181 ... Q02543 32680882
    594194 6zme:LT (3.0) BS01 rna ? GO:0002181 ... P46778 32680882
    594195 6zme:LT (3.0) BS02 rna ? GO:0002181 ... P46778 32680882
    594196 6zme:LU (3.0) BS01 rna ? GO:0002181 ... P35268 32680882
    594197 6zme:LV (3.0) BS01 rna ? GO:0000122 ... P62829 32680882
    594198 6zme:LW (3.0) BS01 rna ? GO:0000027 ... P83731 32680882
    594199 6zme:LW (3.0) BS02 rna ? GO:0000027 ... P83731 32680882
    594200 6zme:LX (3.0) BS01 rna ? GO:0002181 ... P62750 32680882

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).