SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    594201 6zme:LX (3.0) BS02 rna ? GO:0002181 ... P62750 32680882
    594202 6zme:LY (3.0) BS01 rna ? GO:0002181 ... P61254 32680882
    594203 6zme:LY (3.0) BS02 rna ? GO:0002181 ... P61254 32680882
    594204 6zme:LZ (3.0) BS01 rna ? GO:0002181 ... P61353 32680882
    594205 6zme:La (3.0) BS01 rna ? GO:0002181 ... P46776 32680882
    594206 6zme:Lb (3.0) BS01 rna ? GO:0002181 ... P47914 32680882
    594207 6zme:Lc (3.0) BS01 rna ? GO:0002181 ... P62888 32680882
    594208 6zme:Ld (3.0) BS01 rna ? GO:0002181 ... P62899 32680882
    594209 6zme:Le (3.0) BS01 rna ? GO:0002181 ... P62910 32680882
    594210 6zme:Le (3.0) BS02 MG ? GO:0002181 ... P62910 32680882
    594211 6zme:Lf (3.0) BS01 rna ? GO:0000049 ... P18077 32680882
    594212 6zme:Lg (3.0) BS01 rna ? GO:0002181 ... P49207 32680882
    594213 6zme:Lg (3.0) BS02 MG ? GO:0002181 ... P49207 32680882
    594214 6zme:Lh (3.0) BS01 rna ? GO:0000463 ... P42766 32680882
    594215 6zme:Lh (3.0) BS02 rna ? GO:0000463 ... P42766 32680882
    594216 6zme:Li (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 32680882
    594217 6zme:Lj (3.0) BS01 rna ? GO:0002181 ... P61927 32680882
    594218 6zme:Lj (3.0) BS02 rna ? GO:0002181 ... P61927 32680882
    594219 6zme:Lj (3.0) BS03 ZN ? GO:0002181 ... P61927 32680882
    594220 6zme:Lk (3.0) BS01 rna ? GO:0001501 ... P63173 32680882
    594221 6zme:Ll (3.0) BS01 rna ? GO:0002181 ... P62891 32680882
    594222 6zme:Ll (3.0) BS02 rna ? GO:0002181 ... P62891 32680882
    594223 6zme:Lm (3.0) BS01 rna ? GO:0002181 ... P62987 32680882
    594224 6zme:Lm (3.0) BS02 ZN ? GO:0002181 ... P62987 32680882
    594225 6zme:Lo (3.0) BS01 rna ? GO:0002181 ... P83881 32680882
    594226 6zme:Lo (3.0) BS02 rna ? GO:0002181 ... P83881 32680882
    594227 6zme:Lo (3.0) BS03 ZN ? GO:0002181 ... P83881 32680882
    594228 6zme:Lp (3.0) BS01 rna ? GO:0002181 ... P61513 32680882
    594229 6zme:Lp (3.0) BS02 ZN ? GO:0002181 ... P61513 32680882
    594230 6zme:Lr (3.0) BS01 rna ? GO:0002181 ... P46779 32680882
    594231 6zme:Ls (3.0) BS01 rna ? GO:0002181 ... P05388 32680882
    594232 6zme:Lt (3.0) BS01 rna ? GO:0002181 ... P30050 32680882
    594233 6zme:Lz (3.0) BS01 rna ? GO:0002181 ... P62906 32680882
    594234 6zme:Lz (3.0) BS02 rna ? GO:0002181 ... P62906 32680882
    594235 6zme:SA (3.0) BS01 rna ? GO:0000028 ... P08865 32680882
    594236 6zme:SB (3.0) BS01 rna ? GO:0002181 ... P61247 32680882
    594237 6zme:SC (3.0) BS01 rna ? GO:0002181 ... P15880 32680882
    594238 6zme:SC (3.0) BS02 peptide ? GO:0002181 ... P15880 32680882
    594239 6zme:SD (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    594240 6zme:SD (3.0) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 32680882
    594241 6zme:SE (3.0) BS01 rna ? GO:0002181 ... P62701 32680882
    594242 6zme:SF (3.0) BS01 rna ? GO:0000028 ... P46782 32680882
    594243 6zme:SF (3.0) BS02 rna ? GO:0000028 ... P46782 32680882
    594244 6zme:SG (3.0) BS01 rna ? GO:0000082 ... P62753 32680882
    594245 6zme:SH (3.0) BS01 rna ? GO:0001843 ... P62081 32680882
    594246 6zme:SI (3.0) BS01 rna ? GO:0000462 ... P62241 32680882
    594247 6zme:SI (3.0) BS02 rna ? GO:0000462 ... P62241 32680882
    594248 6zme:SJ (3.0) BS01 rna ? GO:0002181 ... P46781 32680882
    594249 6zme:SK (3.0) BS01 rna ? GO:0002181 ... P46783 32680882
    594250 6zme:SL (3.0) BS01 rna ? GO:0002181 ... P62280 32680882
    594251 6zme:SM (3.0) BS01 rna ? GO:0002181 ... P25398 32680882
    594252 6zme:SN (3.0) BS01 rna ? GO:0002181 ... P62277 32680882
    594253 6zme:SN (3.0) BS02 rna ? GO:0002181 ... P62277 32680882
    594254 6zme:SO (3.0) BS01 rna ? GO:0000028 ... P62263 32680882
    594255 6zme:SP (3.0) BS01 rna ? GO:0000028 ... P62841 32680882
    594256 6zme:SQ (3.0) BS01 rna ? GO:0000462 ... P62249 32680882
    594257 6zme:SR (3.0) BS01 rna ? GO:0002181 ... P08708 32680882
    594258 6zme:SS (3.0) BS01 rna ? GO:0002181 ... P62269 32680882
    594259 6zme:ST (3.0) BS01 rna ? GO:0000028 ... P39019 32680882
    594260 6zme:SU (3.0) BS01 rna ? GO:0002181 ... P60866 32680882
    594261 6zme:SW (3.0) BS01 rna ? GO:0002181 ... P62244 32680882
    594262 6zme:SX (3.0) BS01 rna ? GO:0002181 ... P62266 32680882
    594263 6zme:SY (3.0) BS01 rna ? GO:0002181 ... P62847 32680882
    594264 6zme:SZ (3.0) BS01 rna ? GO:0002181 ... P62851 32680882
    594265 6zme:Sa (3.0) BS01 rna ? GO:0002181 ... P62854 32680882
    594266 6zme:Sa (3.0) BS02 ZN ? GO:0002181 ... P62854 32680882
    594267 6zme:Sb (3.0) BS01 rna ? GO:0000028 ... P42677 32680882
    594268 6zme:Sc (3.0) BS01 rna ? GO:0000028 ... P62857 32680882
    594269 6zme:Sd (3.0) BS01 rna ? GO:0002181 ... P62273 32680882
    594270 6zme:Sd (3.0) BS02 ZN ? GO:0002181 ... P62273 32680882
    594271 6zme:Se (3.0) BS01 rna ? GO:0003735 ... P62861 32680882
    594272 6zme:Se (3.0) BS02 peptide ? GO:0003735 ... P62861 32680882
    594273 6zme:Sf (3.0) BS01 rna ? GO:0002181 ... P62979 32680882
    594274 6zme:Sf (3.0) BS02 ZN ? GO:0002181 ... P62979 32680882
    594275 6zme:Sg (3.0) BS01 rna ? GO:0001891 ... P63244 32680882
    594276 6zmg:A (1.48) BS01 SAH N/A N/A N/A 33567250
    594277 6zmi:CA (2.6) BS01 rna ? GO:0003676 ... Q9UQ80 32680882
    594278 6zmi:CE (2.6) BS01 rna ? GO:0000122 ... Q9NX58 32680882
    594279 6zmi:LA (2.6) BS01 rna ? GO:0002181 ... P62917 32680882
    594280 6zmi:LA (2.6) BS02 rna ? GO:0002181 ... P62917 32680882
    594281 6zmi:LA (2.6) BS03 MG ? GO:0002181 ... P62917 32680882
    594282 6zmi:LB (2.6) BS01 rna ? GO:0002181 ... P39023 32680882
    594283 6zmi:LC (2.6) BS01 rna ? GO:0002181 ... P36578 32680882
    594284 6zmi:LC (2.6) BS02 rna ? GO:0002181 ... P36578 32680882
    594285 6zmi:LD (2.6) BS01 rna ? GO:0000027 ... P46777 32680882
    594286 6zmi:LD (2.6) BS02 rna ? GO:0000027 ... P46777 32680882
    594287 6zmi:LE (2.6) BS01 rna ? GO:0002181 ... Q02878 32680882
    594288 6zmi:LF (2.6) BS01 rna ? GO:0000463 ... P18124 32680882
    594289 6zmi:LF (2.6) BS02 rna ? GO:0000463 ... P18124 32680882
    594290 6zmi:LG (2.6) BS01 rna ? GO:0000470 ... P62424 32680882
    594291 6zmi:LG (2.6) BS02 rna ? GO:0000470 ... P62424 32680882
    594292 6zmi:LH (2.6) BS01 rna ? GO:0002181 ... P32969 32680882
    594293 6zmi:LI (2.6) BS01 rna ? GO:0000027 ... Q96L21 32680882
    594294 6zmi:LI (2.6) BS02 rna ? GO:0000027 ... Q96L21 32680882
    594295 6zmi:LJ (2.6) BS01 rna ? GO:0000027 ... P62913 32680882
    594296 6zmi:LJ (2.6) BS02 rna ? GO:0000027 ... P62913 32680882
    594297 6zmi:LL (2.6) BS01 rna ? GO:0001824 ... P26373 32680882
    594298 6zmi:LL (2.6) BS02 rna ? GO:0001824 ... P26373 32680882
    594299 6zmi:LM (2.6) BS01 rna ? GO:0002181 ... P50914 32680882
    594300 6zmi:LN (2.6) BS01 rna ? GO:0002181 ... P61313 32680882
    594301 6zmi:LN (2.6) BS02 rna ? GO:0002181 ... P61313 32680882
    594302 6zmi:LO (2.6) BS01 rna ? GO:0002181 ... P40429 32680882
    594303 6zmi:LP (2.6) BS01 rna ? GO:0002181 ... P18621 32680882
    594304 6zmi:LP (2.6) BS02 rna ? GO:0002181 ... P18621 32680882
    594305 6zmi:LQ (2.6) BS01 rna ? GO:0002181 ... Q07020 32680882
    594306 6zmi:LR (2.6) BS01 rna ? GO:0002181 ... P84098 32680882
    594307 6zmi:LR (2.6) BS02 rna ? GO:0002181 ... P84098 32680882
    594308 6zmi:LS (2.6) BS01 rna ? GO:0002181 ... Q02543 32680882
    594309 6zmi:LS (2.6) BS02 rna ? GO:0002181 ... Q02543 32680882
    594310 6zmi:LT (2.6) BS01 rna ? GO:0002181 ... P46778 32680882
    594311 6zmi:LT (2.6) BS02 rna ? GO:0002181 ... P46778 32680882
    594312 6zmi:LU (2.6) BS01 rna ? GO:0002181 ... P35268 32680882
    594313 6zmi:LV (2.6) BS01 rna ? GO:0000122 ... P62829 32680882
    594314 6zmi:LV (2.6) BS02 rna ? GO:0000122 ... P62829 32680882
    594315 6zmi:LW (2.6) BS01 rna ? GO:0000027 ... P83731 32680882
    594316 6zmi:LW (2.6) BS02 rna ? GO:0000027 ... P83731 32680882
    594317 6zmi:LX (2.6) BS01 rna ? GO:0002181 ... P62750 32680882
    594318 6zmi:LX (2.6) BS02 rna ? GO:0002181 ... P62750 32680882
    594319 6zmi:LY (2.6) BS01 rna ? GO:0002181 ... P61254 32680882
    594320 6zmi:LY (2.6) BS02 rna ? GO:0002181 ... P61254 32680882
    594321 6zmi:LZ (2.6) BS01 rna ? GO:0002181 ... P61353 32680882
    594322 6zmi:La (2.6) BS01 rna ? GO:0002181 ... P46776 32680882
    594323 6zmi:Lb (2.6) BS01 rna ? GO:0002181 ... P47914 32680882
    594324 6zmi:Lc (2.6) BS01 rna ? GO:0002181 ... P62888 32680882
    594325 6zmi:Ld (2.6) BS01 rna ? GO:0002181 ... P62899 32680882
    594326 6zmi:Le (2.6) BS01 rna ? GO:0002181 ... P62910 32680882
    594327 6zmi:Le (2.6) BS02 MG ? GO:0002181 ... P62910 32680882
    594328 6zmi:Lf (2.6) BS01 rna ? GO:0000049 ... P18077 32680882
    594329 6zmi:Lg (2.6) BS01 rna ? GO:0002181 ... P49207 32680882
    594330 6zmi:Lg (2.6) BS02 ZN ? GO:0002181 ... P49207 32680882
    594331 6zmi:Lh (2.6) BS01 rna ? GO:0000463 ... P42766 32680882
    594332 6zmi:Lh (2.6) BS02 rna ? GO:0000463 ... P42766 32680882
    594333 6zmi:Li (2.6) BS01 rna ? GO:0002181 ... Q9Y3U8 32680882
    594334 6zmi:Lj (2.6) BS01 rna ? GO:0002181 ... P61927 32680882
    594335 6zmi:Lj (2.6) BS02 rna ? GO:0002181 ... P61927 32680882
    594336 6zmi:Lj (2.6) BS03 ZN ? GO:0002181 ... P61927 32680882
    594337 6zmi:Lk (2.6) BS01 rna ? GO:0001501 ... P63173 32680882
    594338 6zmi:Ll (2.6) BS01 rna ? GO:0002181 ... P62891 32680882
    594339 6zmi:Ll (2.6) BS02 rna ? GO:0002181 ... P62891 32680882
    594340 6zmi:Lm (2.6) BS01 rna ? GO:0002181 ... P62987 32680882
    594341 6zmi:Lm (2.6) BS02 ZN ? GO:0002181 ... P62987 32680882
    594342 6zmi:Lo (2.6) BS01 rna ? GO:0002181 ... P83881 32680882
    594343 6zmi:Lo (2.6) BS02 rna ? GO:0002181 ... P83881 32680882
    594344 6zmi:Lo (2.6) BS03 ZN ? GO:0002181 ... P83881 32680882
    594345 6zmi:Lp (2.6) BS01 rna ? GO:0002181 ... P61513 32680882
    594346 6zmi:Lp (2.6) BS02 ZN ? GO:0002181 ... P61513 32680882
    594347 6zmi:Lr (2.6) BS01 rna ? GO:0002181 ... P46779 32680882
    594348 6zmi:Ls (2.6) BS01 rna ? GO:0002181 ... P05388 32680882
    594349 6zmi:Lt (2.6) BS01 rna ? GO:0002181 ... P30050 32680882
    594350 6zmi:Lz (2.6) BS01 rna ? GO:0002181 ... P62906 32680882
    594351 6zmi:Lz (2.6) BS02 rna ? GO:0002181 ... P62906 32680882
    594352 6zmi:SA (2.6) BS01 rna ? GO:0000028 ... P08865 32680882
    594353 6zmi:SB (2.6) BS01 rna ? GO:0002181 ... P61247 32680882
    594354 6zmi:SC (2.6) BS01 rna ? GO:0002181 ... P15880 32680882
    594355 6zmi:SD (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    594356 6zmi:SE (2.6) BS01 rna ? GO:0002181 ... P62701 32680882
    594357 6zmi:SF (2.6) BS01 rna ? GO:0000028 ... P46782 32680882
    594358 6zmi:SF (2.6) BS02 rna ? GO:0000028 ... P46782 32680882
    594359 6zmi:SG (2.6) BS01 rna ? GO:0000082 ... P62753 32680882
    594360 6zmi:SH (2.6) BS01 rna ? GO:0001843 ... P62081 32680882
    594361 6zmi:SI (2.6) BS01 rna ? GO:0000462 ... P62241 32680882
    594362 6zmi:SI (2.6) BS02 rna ? GO:0000462 ... P62241 32680882
    594363 6zmi:SJ (2.6) BS01 rna ? GO:0002181 ... P46781 32680882
    594364 6zmi:SK (2.6) BS01 rna ? GO:0002181 ... P46783 32680882
    594365 6zmi:SL (2.6) BS01 rna ? GO:0002181 ... P62280 32680882
    594366 6zmi:SM (2.6) BS01 rna ? GO:0002181 ... P25398 32680882
    594367 6zmi:SN (2.6) BS01 rna ? GO:0002181 ... P62277 32680882
    594368 6zmi:SN (2.6) BS02 rna ? GO:0002181 ... P62277 32680882
    594369 6zmi:SO (2.6) BS01 rna ? GO:0000028 ... P62263 32680882
    594370 6zmi:SP (2.6) BS01 rna ? GO:0000028 ... P62841 32680882
    594371 6zmi:SQ (2.6) BS01 rna ? GO:0000462 ... P62249 32680882
    594372 6zmi:SR (2.6) BS01 rna ? GO:0002181 ... P08708 32680882
    594373 6zmi:SS (2.6) BS01 rna ? GO:0002181 ... P62269 32680882
    594374 6zmi:ST (2.6) BS01 rna ? GO:0000028 ... P39019 32680882
    594375 6zmi:SU (2.6) BS01 rna ? GO:0002181 ... P60866 32680882
    594376 6zmi:SW (2.6) BS01 rna ? GO:0002181 ... P62244 32680882
    594377 6zmi:SX (2.6) BS01 rna ? GO:0002181 ... P62266 32680882
    594378 6zmi:SY (2.6) BS01 rna ? GO:0002181 ... P62847 32680882
    594379 6zmi:SZ (2.6) BS01 rna ? GO:0002181 ... P62851 32680882
    594380 6zmi:Sa (2.6) BS01 rna ? GO:0002181 ... P62854 32680882
    594381 6zmi:Sa (2.6) BS02 ZN ? GO:0002181 ... P62854 32680882
    594382 6zmi:Sb (2.6) BS01 rna ? GO:0000028 ... P42677 32680882
    594383 6zmi:Sc (2.6) BS01 rna ? GO:0000028 ... P62857 32680882
    594384 6zmi:Sd (2.6) BS01 rna ? GO:0002181 ... P62273 32680882
    594385 6zmi:Sd (2.6) BS02 ZN ? GO:0002181 ... P62273 32680882
    594386 6zmi:Se (2.6) BS01 rna ? GO:0003735 ... P62861 32680882
    594387 6zmi:Sf (2.6) BS01 rna ? GO:0002181 ... P62979 32680882
    594388 6zmi:Sf (2.6) BS02 ZN ? GO:0002181 ... P62979 32680882
    594389 6zmi:Sg (2.6) BS01 rna ? GO:0001891 ... P63244 32680882
    594390 6zmi:i (2.6) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 32680882
    594391 6zmj:A (2.774) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    594392 6zmj:A (2.774) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 33846315
    594393 6zmj:B (2.774) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    594394 6zmk:A (2.382) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    594395 6zmk:A (2.382) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 33846315
    594396 6zmk:B (2.382) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    594397 6zmn:A (2.333) BS01 ZN ? GO:0005667 ... P84022 33510867
    594398 6zmn:B (2.333) BS01 dna ? GO:0005667 ... P84022 33510867
    594399 6zmn:B (2.333) BS02 ZN ? GO:0005667 ... P84022 33510867
    594400 6zmo:CA (3.1) BS01 rna ? GO:0003676 ... Q9UQ80 32680882

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).