SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    594401 6zmo:CD (3.1) BS01 rna 3.6.5.- GO:0000049 ... P68104 32680882
    594402 6zmo:CD (3.1) BS02 rna 3.6.5.- GO:0000049 ... P68104 32680882
    594403 6zmo:CE (3.1) BS01 rna ? GO:0000122 ... Q9NX58 32680882
    594404 6zmo:CE (3.1) BS02 rna ? GO:0000122 ... Q9NX58 32680882
    594405 6zmo:LA (3.1) BS01 rna ? GO:0002181 ... P62917 32680882
    594406 6zmo:LA (3.1) BS02 MG ? GO:0002181 ... P62917 32680882
    594407 6zmo:LB (3.1) BS01 rna ? GO:0002181 ... P39023 32680882
    594408 6zmo:LC (3.1) BS01 rna ? GO:0002181 ... P36578 32680882
    594409 6zmo:LC (3.1) BS02 rna ? GO:0002181 ... P36578 32680882
    594410 6zmo:LD (3.1) BS01 rna ? GO:0000027 ... P46777 32680882
    594411 6zmo:LD (3.1) BS02 rna ? GO:0000027 ... P46777 32680882
    594412 6zmo:LE (3.1) BS01 rna ? GO:0002181 ... Q02878 32680882
    594413 6zmo:LF (3.1) BS01 rna ? GO:0000463 ... P18124 32680882
    594414 6zmo:LF (3.1) BS02 rna ? GO:0000463 ... P18124 32680882
    594415 6zmo:LG (3.1) BS01 rna ? GO:0000470 ... P62424 32680882
    594416 6zmo:LG (3.1) BS02 rna ? GO:0000470 ... P62424 32680882
    594417 6zmo:LH (3.1) BS01 rna ? GO:0002181 ... P32969 32680882
    594418 6zmo:LI (3.1) BS01 rna ? GO:0000027 ... Q96L21 32680882
    594419 6zmo:LI (3.1) BS02 rna ? GO:0000027 ... Q96L21 32680882
    594420 6zmo:LJ (3.1) BS01 rna ? GO:0000027 ... P62913 32680882
    594421 6zmo:LJ (3.1) BS02 rna ? GO:0000027 ... P62913 32680882
    594422 6zmo:LL (3.1) BS01 rna ? GO:0001824 ... P26373 32680882
    594423 6zmo:LL (3.1) BS02 rna ? GO:0001824 ... P26373 32680882
    594424 6zmo:LM (3.1) BS01 rna ? GO:0002181 ... P50914 32680882
    594425 6zmo:LN (3.1) BS01 rna ? GO:0002181 ... P61313 32680882
    594426 6zmo:LN (3.1) BS02 rna ? GO:0002181 ... P61313 32680882
    594427 6zmo:LO (3.1) BS01 rna ? GO:0002181 ... P40429 32680882
    594428 6zmo:LP (3.1) BS01 rna ? GO:0002181 ... P18621 32680882
    594429 6zmo:LP (3.1) BS02 rna ? GO:0002181 ... P18621 32680882
    594430 6zmo:LQ (3.1) BS01 rna ? GO:0002181 ... Q07020 32680882
    594431 6zmo:LR (3.1) BS01 rna ? GO:0002181 ... P84098 32680882
    594432 6zmo:LR (3.1) BS02 rna ? GO:0002181 ... P84098 32680882
    594433 6zmo:LS (3.1) BS01 rna ? GO:0002181 ... Q02543 32680882
    594434 6zmo:LS (3.1) BS02 rna ? GO:0002181 ... Q02543 32680882
    594435 6zmo:LT (3.1) BS01 rna ? GO:0002181 ... P46778 32680882
    594436 6zmo:LT (3.1) BS02 rna ? GO:0002181 ... P46778 32680882
    594437 6zmo:LU (3.1) BS01 rna ? GO:0002181 ... P35268 32680882
    594438 6zmo:LV (3.1) BS01 rna ? GO:0000122 ... P62829 32680882
    594439 6zmo:LW (3.1) BS01 rna ? GO:0000027 ... P83731 32680882
    594440 6zmo:LW (3.1) BS02 rna ? GO:0000027 ... P83731 32680882
    594441 6zmo:LX (3.1) BS01 rna ? GO:0002181 ... P62750 32680882
    594442 6zmo:LX (3.1) BS02 rna ? GO:0002181 ... P62750 32680882
    594443 6zmo:LY (3.1) BS01 rna ? GO:0002181 ... P61254 32680882
    594444 6zmo:LY (3.1) BS02 rna ? GO:0002181 ... P61254 32680882
    594445 6zmo:LZ (3.1) BS01 rna ? GO:0002181 ... P61353 32680882
    594446 6zmo:La (3.1) BS01 rna ? GO:0002181 ... P46776 32680882
    594447 6zmo:Lb (3.1) BS01 rna ? GO:0002181 ... P47914 32680882
    594448 6zmo:Lc (3.1) BS01 rna ? GO:0002181 ... P62888 32680882
    594449 6zmo:Ld (3.1) BS01 rna ? GO:0002181 ... P62899 32680882
    594450 6zmo:Le (3.1) BS01 rna ? GO:0002181 ... P62910 32680882
    594451 6zmo:Le (3.1) BS02 MG ? GO:0002181 ... P62910 32680882
    594452 6zmo:Lf (3.1) BS01 rna ? GO:0000049 ... P18077 32680882
    594453 6zmo:Lg (3.1) BS01 rna ? GO:0002181 ... P49207 32680882
    594454 6zmo:Lg (3.1) BS02 MG ? GO:0002181 ... P49207 32680882
    594455 6zmo:Lg (3.1) BS03 ZN ? GO:0002181 ... P49207 32680882
    594456 6zmo:Lh (3.1) BS01 rna ? GO:0000463 ... P42766 32680882
    594457 6zmo:Lh (3.1) BS02 rna ? GO:0000463 ... P42766 32680882
    594458 6zmo:Li (3.1) BS01 rna ? GO:0002181 ... Q9Y3U8 32680882
    594459 6zmo:Lj (3.1) BS01 rna ? GO:0002181 ... P61927 32680882
    594460 6zmo:Lj (3.1) BS02 rna ? GO:0002181 ... P61927 32680882
    594461 6zmo:Lj (3.1) BS03 ZN ? GO:0002181 ... P61927 32680882
    594462 6zmo:Lk (3.1) BS01 rna ? GO:0001501 ... P63173 32680882
    594463 6zmo:Ll (3.1) BS01 rna ? GO:0002181 ... P62891 32680882
    594464 6zmo:Ll (3.1) BS02 rna ? GO:0002181 ... P62891 32680882
    594465 6zmo:Lm (3.1) BS01 rna ? GO:0002181 ... P62987 32680882
    594466 6zmo:Lm (3.1) BS02 ZN ? GO:0002181 ... P62987 32680882
    594467 6zmo:Lo (3.1) BS01 rna ? GO:0002181 ... P83881 32680882
    594468 6zmo:Lo (3.1) BS02 rna ? GO:0002181 ... P83881 32680882
    594469 6zmo:Lo (3.1) BS03 ZN ? GO:0002181 ... P83881 32680882
    594470 6zmo:Lp (3.1) BS01 rna ? GO:0002181 ... P61513 32680882
    594471 6zmo:Lp (3.1) BS02 ZN ? GO:0002181 ... P61513 32680882
    594472 6zmo:Lr (3.1) BS01 rna ? GO:0002181 ... P46779 32680882
    594473 6zmo:Ls (3.1) BS01 rna ? GO:0002181 ... P05388 32680882
    594474 6zmo:Lt (3.1) BS01 rna ? GO:0002181 ... P30050 32680882
    594475 6zmo:Lt (3.1) BS02 rna ? GO:0002181 ... P30050 32680882
    594476 6zmo:Lz (3.1) BS01 rna ? GO:0002181 ... P62906 32680882
    594477 6zmo:Lz (3.1) BS02 rna ? GO:0002181 ... P62906 32680882
    594478 6zmo:SA (3.1) BS01 rna ? GO:0000028 ... P08865 32680882
    594479 6zmo:SB (3.1) BS01 rna ? GO:0002181 ... P61247 32680882
    594480 6zmo:SC (3.1) BS01 rna ? GO:0002181 ... P15880 32680882
    594481 6zmo:SD (3.1) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    594482 6zmo:SE (3.1) BS01 rna ? GO:0002181 ... P62701 32680882
    594483 6zmo:SF (3.1) BS01 rna ? GO:0000028 ... P46782 32680882
    594484 6zmo:SF (3.1) BS02 rna ? GO:0000028 ... P46782 32680882
    594485 6zmo:SG (3.1) BS01 rna ? GO:0000082 ... P62753 32680882
    594486 6zmo:SH (3.1) BS01 rna ? GO:0001843 ... P62081 32680882
    594487 6zmo:SI (3.1) BS01 rna ? GO:0000462 ... P62241 32680882
    594488 6zmo:SI (3.1) BS02 rna ? GO:0000462 ... P62241 32680882
    594489 6zmo:SJ (3.1) BS01 rna ? GO:0002181 ... P46781 32680882
    594490 6zmo:SK (3.1) BS01 rna ? GO:0002181 ... P46783 32680882
    594491 6zmo:SL (3.1) BS01 rna ? GO:0002181 ... P62280 32680882
    594492 6zmo:SL (3.1) BS02 rna ? GO:0002181 ... P62280 32680882
    594493 6zmo:SM (3.1) BS01 rna ? GO:0002181 ... P25398 32680882
    594494 6zmo:SN (3.1) BS01 rna ? GO:0002181 ... P62277 32680882
    594495 6zmo:SN (3.1) BS02 rna ? GO:0002181 ... P62277 32680882
    594496 6zmo:SO (3.1) BS01 rna ? GO:0000028 ... P62263 32680882
    594497 6zmo:SP (3.1) BS01 rna ? GO:0000028 ... P62841 32680882
    594498 6zmo:SQ (3.1) BS01 rna ? GO:0000462 ... P62249 32680882
    594499 6zmo:SR (3.1) BS01 rna ? GO:0002181 ... P08708 32680882
    594500 6zmo:SS (3.1) BS01 rna ? GO:0002181 ... P62269 32680882
    594501 6zmo:ST (3.1) BS01 rna ? GO:0000028 ... P39019 32680882
    594502 6zmo:SU (3.1) BS01 rna ? GO:0002181 ... P60866 32680882
    594503 6zmo:SW (3.1) BS01 rna ? GO:0002181 ... P62244 32680882
    594504 6zmo:SX (3.1) BS01 rna ? GO:0002181 ... P62266 32680882
    594505 6zmo:SY (3.1) BS01 rna ? GO:0002181 ... P62847 32680882
    594506 6zmo:SZ (3.1) BS01 rna ? GO:0002181 ... P62851 32680882
    594507 6zmo:Sa (3.1) BS01 rna ? GO:0002181 ... P62854 32680882
    594508 6zmo:Sa (3.1) BS02 ZN ? GO:0002181 ... P62854 32680882
    594509 6zmo:Sb (3.1) BS01 rna ? GO:0000028 ... P42677 32680882
    594510 6zmo:Sc (3.1) BS01 rna ? GO:0000028 ... P62857 32680882
    594511 6zmo:Sd (3.1) BS01 rna ? GO:0002181 ... P62273 32680882
    594512 6zmo:Sd (3.1) BS02 ZN ? GO:0002181 ... P62273 32680882
    594513 6zmo:Se (3.1) BS01 rna ? GO:0003735 ... P62861 32680882
    594514 6zmo:Sf (3.1) BS01 rna ? GO:0002181 ... P62979 32680882
    594515 6zmo:Sg (3.1) BS01 rna ? GO:0001891 ... P63244 32680882
    594516 6zmo:i (3.1) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 32680882
    594517 6zmp:A (1.57) BS01 peptide ? GO:0016747 ... G0SGG4 33398031
    594518 6zmp:A (1.57) BS02 CMC ? GO:0016747 ... G0SGG4 33398031
    594519 6zmp:B (1.57) BS01 peptide ? GO:0016747 ... G0SGG4 33398031
    594520 6zmp:B (1.57) BS02 CMC ? GO:0016747 ... G0SGG4 33398031
    594521 6zmq:A (2.67) BS01 HEM ? GO:0015232 ... Q72IU4 33958791
    594522 6zmr:a (3.94) BS01 CDL ? GO:0005739 ... Q35915 32900941
    594523 6zmr:b (3.94) BS01 CDL ? GO:0015078 ... A0A8D0MI69 32900941
    594524 6zmr:f (3.94) BS01 CDL ? GO:0005739 ... Q95339 32900941
    594525 6zmt:B (3.0) BS01 rna ? GO:0000028 ... P08865 32680882
    594526 6zmt:C (3.0) BS01 rna ? GO:0002181 ... P61247 32680882
    594527 6zmt:D (3.0) BS01 rna ? GO:0002181 ... P15880 32680882
    594528 6zmt:D (3.0) BS02 peptide ? GO:0002181 ... P15880 32680882
    594529 6zmt:E (3.0) BS01 rna ? GO:0002181 ... P62701 32680882
    594530 6zmt:F (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    594531 6zmt:F (3.0) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 32680882
    594532 6zmt:G (3.0) BS01 rna ? GO:0000082 ... P62753 32680882
    594533 6zmt:H (3.0) BS01 rna ? GO:0001843 ... P62081 32680882
    594534 6zmt:I (3.0) BS01 rna ? GO:0000462 ... P62241 32680882
    594535 6zmt:J (3.0) BS01 rna ? GO:0002181 ... P46781 32680882
    594536 6zmt:K (3.0) BS01 rna ? GO:0000028 ... P46782 32680882
    594537 6zmt:L (3.0) BS01 rna ? GO:0002181 ... P62280 32680882
    594538 6zmt:M (3.0) BS01 rna ? GO:0002181 ... P46783 32680882
    594539 6zmt:N (3.0) BS01 rna ? GO:0002181 ... P62277 32680882
    594540 6zmt:O (3.0) BS01 rna ? GO:0002181 ... P25398 32680882
    594541 6zmt:P (3.0) BS01 rna ? GO:0000028 ... P62263 32680882
    594542 6zmt:Q (3.0) BS01 rna ? GO:0000028 ... P62841 32680882
    594543 6zmt:R (3.0) BS01 rna ? GO:0000462 ... P62249 32680882
    594544 6zmt:S (3.0) BS01 rna ? GO:0002181 ... P08708 32680882
    594545 6zmt:T (3.0) BS01 rna ? GO:0002181 ... P62269 32680882
    594546 6zmt:U (3.0) BS01 rna ? GO:0000028 ... P39019 32680882
    594547 6zmt:V (3.0) BS01 rna ? GO:0002181 ... P60866 32680882
    594548 6zmt:W (3.0) BS01 rna ? GO:0002181 ... P62244 32680882
    594549 6zmt:X (3.0) BS01 rna ? GO:0002181 ... P62266 32680882
    594550 6zmt:Y (3.0) BS01 rna ? GO:0002181 ... P62847 32680882
    594551 6zmt:a (3.0) BS01 rna ? GO:0002181 ... P62851 32680882
    594552 6zmt:b (3.0) BS01 rna ? GO:0000028 ... P42677 32680882
    594553 6zmt:d (3.0) BS01 rna ? GO:0000028 ... P62857 32680882
    594554 6zmt:e (3.0) BS01 rna ? GO:0003735 ... P62861 32680882
    594555 6zmt:f (3.0) BS01 rna ? GO:0002181 ... P62273 32680882
    594556 6zmt:f (3.0) BS02 ZN ? GO:0002181 ... P62273 32680882
    594557 6zmt:g (3.0) BS01 rna ? GO:0002181 ... P62979 32680882
    594558 6zmt:g (3.0) BS02 ZN ? GO:0002181 ... P62979 32680882
    594559 6zmt:j (3.0) BS01 rna ? GO:0001891 ... P63244 32680882
    594560 6zmt:u (3.0) BS01 rna ? GO:0000462 ... Q2NL82 32680882
    594561 6zmw:B (3.7) BS01 rna ? GO:0002181 ... P62280 32883864
    594562 6zmw:C (3.7) BS01 rna ? GO:0002181 ... P62701 32883864
    594563 6zmw:D (3.7) BS01 rna ? GO:0002181 ... P46781 32883864
    594564 6zmw:E (3.7) BS01 rna ? GO:0002181 ... P62266 32883864
    594565 6zmw:F (3.7) BS01 rna ? GO:0003735 ... P62861 32883864
    594566 6zmw:G (3.7) BS01 rna ? GO:0001843 ... P62081 32883864
    594567 6zmw:H (3.7) BS01 rna ? GO:0000028 ... P42677 32883864
    594568 6zmw:I (3.7) BS01 rna ? GO:0002181 ... P62277 32883864
    594569 6zmw:J (3.7) BS01 rna ? GO:0002181 ... P62244 32883864
    594570 6zmw:L (3.7) BS01 rna ? GO:0002181 ... P15880 32883864
    594571 6zmw:M (3.7) BS01 rna ? GO:0002181 ... P08708 32883864
    594572 6zmw:N (3.7) BS01 rna ? GO:0000028 ... P08865 32883864
    594573 6zmw:O (3.7) BS01 rna ? GO:0002181 ... P61247 32883864
    594574 6zmw:P (3.7) BS01 rna ? GO:0000028 ... P62263 32883864
    594575 6zmw:Q (3.7) BS01 rna ? GO:0002181 ... P62854 32883864
    594576 6zmw:Q (3.7) BS02 rna ? GO:0002181 ... P62854 32883864
    594577 6zmw:Q (3.7) BS03 ZN ? GO:0002181 ... P62854 32883864
    594578 6zmw:R (3.7) BS01 rna ? GO:0000462 ... P62241 32883864
    594579 6zmw:S (3.7) BS01 rna ? GO:0000082 ... P62753 32883864
    594580 6zmw:T (3.7) BS01 rna ? GO:0002181 ... P62847 32883864
    594581 6zmw:V (3.7) BS01 rna ? GO:0000028 ... P46782 32883864
    594582 6zmw:V (3.7) BS02 MG ? GO:0000028 ... P46782 32883864
    594583 6zmw:Y (3.7) BS01 rna ? GO:0000462 ... P62249 32883864
    594584 6zmw:Z (3.7) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32883864
    594585 6zmw:Z (3.7) BS02 rna 4.2.99.18 GO:0000977 ... P23396 32883864
    594586 6zmw:a (3.7) BS01 rna ? GO:0002181 ... P46783 32883864
    594587 6zmw:b (3.7) BS01 rna ? GO:0000028 ... P62841 32883864
    594588 6zmw:c (3.7) BS01 rna ? GO:0001891 ... P63244 32883864
    594589 6zmw:d (3.7) BS01 rna ? GO:0000028 ... P39019 32883864
    594590 6zmw:d (3.7) BS02 MG ? GO:0000028 ... P39019 32883864
    594591 6zmw:e (3.7) BS01 rna ? GO:0002181 ... P62851 32883864
    594592 6zmw:f (3.7) BS01 rna ? GO:0002181 ... P62269 32883864
    594593 6zmw:f (3.7) BS02 MG ? GO:0002181 ... P62269 32883864
    594594 6zmw:h (3.7) BS01 rna ? GO:0002181 ... P60866 32883864
    594595 6zmw:i (3.7) BS01 rna ? GO:0002181 ... P62273 32883864
    594596 6zmw:k (3.7) BS01 rna ? GO:0002181 ... P62979 32883864
    594597 6zmw:k (3.7) BS02 ZN ? GO:0002181 ... P62979 32883864
    594598 6zmw:m (3.7) BS01 rna ? GO:0002181 ... P25398 32883864
    594599 6zmw:n (3.7) BS01 rna ? GO:0000028 ... P62857 32883864
    594600 6zmw:p (3.7) BS01 rna ? GO:0003723 ... P41567 32883864

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).