SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    595201 6zp4:d (2.9) BS01 rna ? GO:0002181 ... P15880 32680882
    595202 6zp4:e (2.9) BS01 rna ? GO:0000028 ... P46782 32680882
    595203 6zp4:g (2.9) BS01 rna ? GO:0000462 ... P62249 32680882
    595204 6zp4:h (2.9) BS01 rna ? GO:0002181 ... P60866 32680882
    595205 6zp4:i (2.9) BS01 rna ? GO:0000028 ... P62263 32680882
    595206 6zp4:j (2.9) BS01 rna ? GO:0002181 ... P62266 32680882
    595207 6zp4:k (2.9) BS01 rna ? GO:0002181 ... P62269 32680882
    595208 6zp4:l (2.9) BS01 rna ? GO:0002181 ... P62273 32680882
    595209 6zp4:l (2.9) BS02 ZN ? GO:0002181 ... P62273 32680882
    595210 6zp4:m (2.9) BS01 rna ? GO:0002181 ... P62277 32680882
    595211 6zp4:n (2.9) BS01 rna ? GO:0002181 ... P62280 32680882
    595212 6zp4:o (2.9) BS01 rna ? GO:0000028 ... P62841 32680882
    595213 6zp4:p (2.9) BS01 rna ? GO:0002181 ... P61247 32680882
    595214 6zp4:q (2.9) BS01 rna ? GO:0002181 ... P62701 32680882
    595215 6zp4:r (2.9) BS01 rna ? GO:0000082 ... P62753 32680882
    595216 6zp4:s (2.9) BS01 rna ? GO:0001843 ... P62081 32680882
    595217 6zp4:t (2.9) BS01 rna ? GO:0000462 ... P62241 32680882
    595218 6zp4:u (2.9) BS01 rna ? GO:0002181 ... P46783 32680882
    595219 6zp4:v (2.9) BS01 rna ? GO:0002181 ... P25398 32680882
    595220 6zp4:w (2.9) BS01 rna ? GO:0002181 ... P08708 32680882
    595221 6zp4:x (2.9) BS01 rna ? GO:0000028 ... P39019 32680882
    595222 6zp4:z (2.9) BS01 rna ? GO:0002181 ... P62847 32680882
    595223 6zp6:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 33452852
    595224 6zp6:H (2.8) BS01 QOB 3.4.25.1 GO:0004298 ... P25043 33452852
    595225 6zp6:I (2.8) BS01 QOB 3.4.25.1 GO:0000502 ... P25451 33452852
    595226 6zp6:K (2.8) BS01 QOB 3.4.25.1 GO:0004298 ... P30656 33452852
    595227 6zp6:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    595228 6zp6:L (2.8) BS01 QOB 3.4.25.1 GO:0000502 ... P23724 33452852
    595229 6zp6:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 33452852
    595230 6zp6:V (2.8) BS01 QOB 3.4.25.1 GO:0004298 ... P25043 33452852
    595231 6zp6:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 33452852
    595232 6zp6:W (2.8) BS01 QOB 3.4.25.1 GO:0000502 ... P25451 33452852
    595233 6zp6:Y (2.8) BS01 QOB 3.4.25.1 GO:0004298 ... P30656 33452852
    595234 6zp6:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    595235 6zp6:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 33452852
    595236 6zp8:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 33452852
    595237 6zp8:H (3.0) BS01 QOE 3.4.25.1 GO:0004298 ... P25043 33452852
    595238 6zp8:I (3.0) BS01 QOE 3.4.25.1 GO:0000502 ... P25451 33452852
    595239 6zp8:K (3.0) BS01 QOE 3.4.25.1 GO:0004298 ... P30656 33452852
    595240 6zp8:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    595241 6zp8:L (3.0) BS01 QOE 3.4.25.1 GO:0000502 ... P23724 33452852
    595242 6zp8:N (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P38624 33452852
    595243 6zp8:V (3.0) BS01 QOE 3.4.25.1 GO:0004298 ... P25043 33452852
    595244 6zp8:V (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 33452852
    595245 6zp8:W (3.0) BS01 QOE 3.4.25.1 GO:0000502 ... P25451 33452852
    595246 6zp8:Y (3.0) BS01 QOE 3.4.25.1 GO:0004298 ... P30656 33452852
    595247 6zp8:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 33452852
    595248 6zp8:Z (3.0) BS01 QOE 3.4.25.1 GO:0000502 ... P23724 33452852
    595249 6zpa:A (0.860003) BS01 3D1 N/A N/A N/A 33893297
    595250 6zpa:A (0.860003) BS02 ZN N/A N/A N/A 33893297
    595251 6zpb:A (1.72097) BS01 3D1 N/A N/A N/A 33893297
    595252 6zpb:A (1.72097) BS02 CO N/A N/A N/A 33893297
    595253 6zpb:A (1.72097) BS03 CO N/A N/A N/A 33893297
    595254 6zpc:A (1.26836) BS01 DTP N/A N/A N/A 33893297
    595255 6zpc:A (1.26836) BS02 ZN N/A N/A N/A 33893297
    595256 6zpd:A (2.24) BS01 VIV ? N/A P49638 33197771 MOAD: Kd=14.25nM
    BindingDB: Kd=2.4nM
    595257 6zpe:A (1.58) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 33036230
    595258 6zpe:A (1.58) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 33036230
    595259 6zph:B (6.9) BS01 ADP ? GO:0003777 ... Q9NS87 33252036
    595260 6zpi:A (4.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 33252036
    595261 6zpi:A (4.5) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 33252036
    595262 6zpi:B (4.5) BS01 GDP ? GO:0000226 ... P02554 33252036
    595263 6zpi:B (4.5) BS02 TA1 ? GO:0000226 ... P02554 33252036 BindingDB: EC50=520nM
    595264 6zpi:C (4.5) BS01 ANP ? GO:0003777 ... Q9NS87 33252036
    595265 6zpi:C (4.5) BS02 MG ? GO:0003777 ... Q9NS87 33252036
    595266 6zpl:A (3.945) BS01 QET ? GO:0016020 ... P48067 33658720
    595267 6zpl:A (3.945) BS02 NA ? GO:0016020 ... P48067 33658720
    595268 6zpl:A (3.945) BS03 CL ? GO:0016020 ... P48067 33658720
    595269 6zpl:B (3.945) BS01 QET ? GO:0016020 ... P48067 33658720
    595270 6zpl:B (3.945) BS02 NA ? GO:0016020 ... P48067 33658720
    595271 6zpl:B (3.945) BS03 CL ? GO:0016020 ... P48067 33658720
    595272 6zpo:A (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    595273 6zpo:B (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    595274 6zpo:C (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    595275 6zpo:D (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595276 6zpo:D (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    595277 6zpo:E (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595278 6zpo:F (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595279 6zpo:a (4.0) BS01 CDL ? GO:0005739 ... P00847 32900941
    595280 6zpo:a (4.0) BS02 CDL ? GO:0005739 ... P00847 32900941
    595281 6zpo:b (4.0) BS01 CDL ? GO:0015078 ... P13619 32900941
    595282 6zpo:b (4.0) BS02 CDL ? GO:0015078 ... P13619 32900941
    595283 6zpo:f (4.0) BS01 CDL ? GO:0005739 ... Q28851 32900941
    595284 6zpo:f (4.0) BS02 CDL ? GO:0005739 ... Q28851 32900941
    595285 6zpo:f (4.0) BS03 CDL ? GO:0005739 ... Q28851 32900941
    595286 6zpq:A (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595287 6zpq:B (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595288 6zpq:B (1.85) BS02 MG 3.4.15.1 GO:0006508 ... P12821 33067882
    595289 6zpq:C (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595290 6zpq:D (1.85) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595291 6zpr:A (-1.00) BS01 QOK ? GO:0007166 ... Q8NB16 33318170
    595292 6zpt:A (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595293 6zpt:B (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595294 6zpt:C (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595295 6zpt:D (2.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595296 6zpu:A (2.0) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 33067882
    595297 6zpy:AAA (1.27) BS01 AHR N/A GO:0046373 ... N/A 33135683
    595298 6zpz:AAA (1.71) BS01 LX5 N/A GO:0046373 ... N/A 33135683
    595299 6zq0:AAA (1.54) BS01 LXE N/A GO:0046373 ... N/A 33135683
    595300 6zq1:AAA (1.7) BS01 EDG N/A GO:0046373 ... N/A 33135683
    595301 6zq2:A (1.29) BS01 32U 3.4.21.4 GO:0004175 ... P00760 N/A
    595302 6zq2:A (1.29) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    595303 6zq4:A (2.02) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595304 6zq4:B (2.02) BS01 PO4 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595305 6zq4:B (2.02) BS02 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595306 6zq4:C (2.02) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595307 6zq4:D (2.02) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595308 6zq4:E (2.02) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595309 6zq4:F (2.02) BS01 PO4 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595310 6zq4:F (2.02) BS02 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595311 6zq4:G (2.02) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595312 6zq4:H (2.02) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595313 6zq6:A (2.3) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595314 6zq6:B (2.3) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595315 6zq6:C (2.3) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595316 6zq6:D (2.3) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595317 6zq6:D (2.3) BS02 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595318 6zq7:A (2.421) BS01 GOL 2.7.1.30 GO:0004370 ... G0SAG9 33339113
    595319 6zqa:CD (4.4) BS01 rna ? GO:0000154 ... Q12460 32943521
    595320 6zqa:CE (4.4) BS01 rna ? GO:0000447 ... Q12499 32943521
    595321 6zqa:CE (4.4) BS02 rna ? GO:0000447 ... Q12499 32943521
    595322 6zqa:CF (4.4) BS01 rna ? GO:0000245 ... P39990 32943521
    595323 6zqa:CI (4.4) BS01 rna ? GO:0003723 ... P32899 32943521
    595324 6zqa:CI (4.4) BS02 rna ? GO:0003723 ... P32899 32943521
    595325 6zqa:CJ (4.4) BS01 rna ? GO:0005515 ... P53941 32943521
    595326 6zqa:CK (4.4) BS01 rna ? GO:0000447 ... P47083 32943521
    595327 6zqa:CL (4.4) BS01 rna ? GO:0000462 ... Q08965 32943521
    595328 6zqa:CL (4.4) BS02 rna ? GO:0000462 ... Q08965 32943521
    595329 6zqa:CL (4.4) BS03 GTP ? GO:0000462 ... Q08965 32943521
    595330 6zqa:CM (4.4) BS01 rna ? GO:0000447 ... Q08096 32943521
    595331 6zqa:CN (4.4) BS01 rna ? GO:0000028 ... P25368 32943521
    595332 6zqa:DA (4.4) BS01 rna ? GO:0000462 ... P33442 32943521
    595333 6zqa:DF (4.4) BS01 rna ? GO:0000028 ... P26783 32943521
    595334 6zqa:DH (4.4) BS01 rna ? GO:0002181 ... P26786 32943521
    595335 6zqa:DJ (4.4) BS01 rna ? GO:0000462 ... O13516 32943521
    595336 6zqa:DN (4.4) BS01 rna ? GO:0000462 ... P05756 32943521
    595337 6zqa:DO (4.4) BS01 rna ? GO:0000028 ... P06367 32943521
    595338 6zqa:DQ (4.4) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595339 6zqa:DQ (4.4) BS02 rna ? GO:0000462 ... P0CX51 32943521
    595340 6zqa:DW (4.4) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595341 6zqa:DX (4.4) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595342 6zqa:Db (4.4) BS01 rna ? GO:0000028 ... P35997 32943521
    595343 6zqa:Dc (4.4) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    595344 6zqa:JG (4.4) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    595345 6zqa:JH (4.4) BS01 rna ? GO:0000447 ... P38333 32943521
    595346 6zqa:JJ (4.4) BS01 rna ? GO:0000056 ... Q99216 32943521
    595347 6zqa:JM (4.4) BS01 rna ? GO:0000447 ... Q12035 32943521
    595348 6zqa:JM (4.4) BS02 rna ? GO:0000447 ... Q12035 32943521
    595349 6zqa:JN (4.4) BS01 rna ? GO:0000462 ... P40546 32943521
    595350 6zqa:JN (4.4) BS02 rna ? GO:0000462 ... P40546 32943521
    595351 6zqa:JO (4.4) BS01 rna ? GO:0000447 ... P25586 32943521
    595352 6zqa:JP (4.4) BS01 rna ? GO:0000462 ... P33750 32943521
    595353 6zqa:JP (4.4) BS02 rna ? GO:0000462 ... P33750 32943521
    595354 6zqa:JP (4.4) BS03 rna ? GO:0000462 ... P33750 32943521
    595355 6zqa:JQ (4.4) BS01 rna ? GO:0003674 ... P40470 32943521
    595356 6zqa:UA (4.4) BS01 rna ? GO:0000028 ... P25635 32943521
    595357 6zqa:UA (4.4) BS02 rna ? GO:0000028 ... P25635 32943521
    595358 6zqa:UB (4.4) BS01 rna ? GO:0000028 ... Q99207 32943521
    595359 6zqa:UB (4.4) BS02 rna ? GO:0000028 ... Q99207 32943521
    595360 6zqa:UC (4.4) BS01 rna ? GO:0000447 ... Q12136 32943521
    595361 6zqa:UD (4.4) BS01 rna ? GO:0000462 ... Q06679 32943521
    595362 6zqa:UE (4.4) BS01 rna ? GO:0000462 ... Q04177 32943521
    595363 6zqa:UF (4.4) BS01 rna ? GO:0000447 ... Q02354 32943521
    595364 6zqa:UG (4.4) BS01 rna ? GO:0000447 ... P40055 32943521
    595365 6zqa:UG (4.4) BS02 rna ? GO:0000447 ... P40055 32943521
    595366 6zqa:UK (4.4) BS01 rna ? GO:0000447 ... P34247 32943521
    595367 6zqa:UK (4.4) BS02 rna ? GO:0000447 ... P34247 32943521
    595368 6zqa:UL (4.4) BS01 rna ? GO:0000447 ... Q12220 32943521
    595369 6zqa:UM (4.4) BS01 rna ? GO:0000447 ... Q05946 32943521
    595370 6zqa:UN (4.4) BS01 rna ? GO:0000447 ... Q04500 32943521
    595371 6zqa:UO (4.4) BS01 rna ? GO:0000462 ... Q04305 32943521
    595372 6zqa:UP (4.4) BS01 rna ? GO:0000447 ... Q08492 32943521
    595373 6zqa:UQ (4.4) BS01 rna ? GO:0000462 ... Q02931 32943521
    595374 6zqa:UR (4.4) BS01 rna ? GO:0000292 ... P40362 32943521
    595375 6zqa:UU (4.4) BS01 rna ? GO:0003674 ... Q06078 32943521
    595376 6zqa:UU (4.4) BS02 rna ? GO:0003674 ... Q06078 32943521
    595377 6zqa:UZ (4.4) BS01 rna ? GO:0000462 ... P36144 32943521
    595378 6zqa:UZ (4.4) BS02 rna ? GO:0000462 ... P36144 32943521
    595379 6zqb:CD (3.9) BS01 rna ? GO:0000154 ... Q12460 32943521
    595380 6zqb:CD (3.9) BS02 rna ? GO:0000154 ... Q12460 32943521
    595381 6zqb:CE (3.9) BS01 rna ? GO:0000447 ... Q12499 32943521
    595382 6zqb:CE (3.9) BS02 rna ? GO:0000447 ... Q12499 32943521
    595383 6zqb:CF (3.9) BS01 rna ? GO:0000245 ... P39990 32943521
    595384 6zqb:CG (3.9) BS01 rna ? GO:0000245 ... P39990 32943521
    595385 6zqb:CH (3.9) BS01 rna ? GO:0000447 ... Q06506 32943521
    595386 6zqb:CI (3.9) BS01 rna ? GO:0003723 ... P32899 32943521
    595387 6zqb:CI (3.9) BS02 rna ? GO:0003723 ... P32899 32943521
    595388 6zqb:CJ (3.9) BS01 rna ? GO:0005515 ... P53941 32943521
    595389 6zqb:CK (3.9) BS01 rna ? GO:0000447 ... P47083 32943521
    595390 6zqb:CL (3.9) BS01 rna ? GO:0000462 ... Q08965 32943521
    595391 6zqb:CL (3.9) BS02 rna ? GO:0000462 ... Q08965 32943521
    595392 6zqb:CL (3.9) BS03 rna ? GO:0000462 ... Q08965 32943521
    595393 6zqb:CL (3.9) BS04 GTP ? GO:0000462 ... Q08965 32943521
    595394 6zqb:CM (3.9) BS01 rna ? GO:0000447 ... Q08096 32943521
    595395 6zqb:CN (3.9) BS01 rna ? GO:0000028 ... P25368 32943521
    595396 6zqb:DA (3.9) BS01 rna ? GO:0000462 ... P33442 32943521
    595397 6zqb:DE (3.9) BS01 rna ? GO:0002181 ... P0CX35 32943521
    595398 6zqb:DF (3.9) BS01 rna ? GO:0000028 ... P26783 32943521
    595399 6zqb:DG (3.9) BS01 rna ? GO:0000462 ... P0CX37 32943521
    595400 6zqb:DH (3.9) BS01 rna ? GO:0002181 ... P26786 32943521

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).