SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    595401 6zqb:DI (3.9) BS01 rna ? GO:0000462 ... P0CX39 32943521
    595402 6zqb:DJ (3.9) BS01 rna ? GO:0000462 ... O13516 32943521
    595403 6zqb:DL (3.9) BS01 rna ? GO:0000028 ... P0CX47 32943521
    595404 6zqb:DN (3.9) BS01 rna ? GO:0000462 ... P05756 32943521
    595405 6zqb:DO (3.9) BS01 rna ? GO:0000028 ... P06367 32943521
    595406 6zqb:DQ (3.9) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595407 6zqb:DW (3.9) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595408 6zqb:DX (3.9) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595409 6zqb:DY (3.9) BS01 rna ? GO:0000462 ... P0CX31 32943521
    595410 6zqb:Db (3.9) BS01 rna ? GO:0000028 ... P35997 32943521
    595411 6zqb:Db (3.9) BS02 ZN ? GO:0000028 ... P35997 32943521
    595412 6zqb:Dc (3.9) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    595413 6zqb:JA (3.9) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943521
    595414 6zqb:JC (3.9) BS01 rna ? GO:0000462 ... P48234 32943521
    595415 6zqb:JE (3.9) BS01 rna ? GO:0000447 ... P40079 32943521
    595416 6zqb:JG (3.9) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    595417 6zqb:JH (3.9) BS01 rna ? GO:0000447 ... P38333 32943521
    595418 6zqb:JJ (3.9) BS01 rna ? GO:0000056 ... Q99216 32943521
    595419 6zqb:JK (3.9) BS01 rna ? GO:0000462 ... Q06631 32943521
    595420 6zqb:JM (3.9) BS01 rna ? GO:0000447 ... Q12035 32943521
    595421 6zqb:JM (3.9) BS02 rna ? GO:0000447 ... Q12035 32943521
    595422 6zqb:JN (3.9) BS01 rna ? GO:0000462 ... P40546 32943521
    595423 6zqb:JN (3.9) BS02 rna ? GO:0000462 ... P40546 32943521
    595424 6zqb:JN (3.9) BS03 rna ? GO:0000462 ... P40546 32943521
    595425 6zqb:JO (3.9) BS01 rna ? GO:0000447 ... P25586 32943521
    595426 6zqb:JP (3.9) BS01 rna ? GO:0000462 ... P33750 32943521
    595427 6zqb:JP (3.9) BS02 rna ? GO:0000462 ... P33750 32943521
    595428 6zqb:JP (3.9) BS03 rna ? GO:0000462 ... P33750 32943521
    595429 6zqb:JQ (3.9) BS01 rna ? GO:0003674 ... P40470 32943521
    595430 6zqb:UA (3.9) BS01 rna ? GO:0000028 ... P25635 32943521
    595431 6zqb:UA (3.9) BS02 rna ? GO:0000028 ... P25635 32943521
    595432 6zqb:UA (3.9) BS03 rna ? GO:0000028 ... P25635 32943521
    595433 6zqb:UB (3.9) BS01 rna ? GO:0000028 ... Q99207 32943521
    595434 6zqb:UB (3.9) BS02 rna ? GO:0000028 ... Q99207 32943521
    595435 6zqb:UC (3.9) BS01 rna ? GO:0000447 ... Q12136 32943521
    595436 6zqb:UD (3.9) BS01 rna ? GO:0000462 ... Q06679 32943521
    595437 6zqb:UE (3.9) BS01 rna ? GO:0000462 ... Q04177 32943521
    595438 6zqb:UF (3.9) BS01 rna ? GO:0000447 ... Q02354 32943521
    595439 6zqb:UG (3.9) BS01 rna ? GO:0000447 ... P40055 32943521
    595440 6zqb:UG (3.9) BS02 rna ? GO:0000447 ... P40055 32943521
    595441 6zqb:UG (3.9) BS03 rna ? GO:0000447 ... P40055 32943521
    595442 6zqb:UI (3.9) BS01 rna ? GO:0000049 ... P38882 32943521
    595443 6zqb:UK (3.9) BS01 rna ? GO:0000447 ... P34247 32943521
    595444 6zqb:UK (3.9) BS02 rna ? GO:0000447 ... P34247 32943521
    595445 6zqb:UK (3.9) BS03 rna ? GO:0000447 ... P34247 32943521
    595446 6zqb:UL (3.9) BS01 rna ? GO:0000447 ... Q12220 32943521
    595447 6zqb:UM (3.9) BS01 rna ? GO:0000447 ... Q05946 32943521
    595448 6zqb:UN (3.9) BS01 rna ? GO:0006364 ... Q04500 32943521
    595449 6zqb:UN (3.9) BS02 rna ? GO:0006364 ... Q04500 32943521
    595450 6zqb:UO (3.9) BS01 rna ? GO:0000462 ... Q04305 32943521
    595451 6zqb:UO (3.9) BS02 rna ? GO:0000462 ... Q04305 32943521
    595452 6zqb:UP (3.9) BS01 rna ? GO:0000447 ... Q08492 32943521
    595453 6zqb:UQ (3.9) BS01 rna ? GO:0000462 ... Q02931 32943521
    595454 6zqb:UQ (3.9) BS02 rna ? GO:0000462 ... Q02931 32943521
    595455 6zqb:UR (3.9) BS01 rna ? GO:0000292 ... P40362 32943521
    595456 6zqb:US (3.9) BS01 rna ? GO:0000028 ... Q06512 32943521
    595457 6zqb:UT (3.9) BS01 rna ? GO:0000447 ... P35194 32943521
    595458 6zqb:UU (3.9) BS01 rna ? GO:0003674 ... Q06078 32943521
    595459 6zqb:UU (3.9) BS02 rna ? GO:0003674 ... Q06078 32943521
    595460 6zqb:UV (3.9) BS01 rna ? GO:0000028 ... P53254 32943521
    595461 6zqb:UX (3.9) BS01 rna ? GO:0000447 ... Q05498 32943521
    595462 6zqb:UX (3.9) BS02 rna ? GO:0000447 ... Q05498 32943521
    595463 6zqb:UX (3.9) BS03 rna ? GO:0000447 ... Q05498 32943521
    595464 6zqb:UX (3.9) BS04 ZN ? GO:0000447 ... Q05498 32943521
    595465 6zqb:UZ (3.9) BS01 rna ? GO:0000462 ... P36144 32943521
    595466 6zqb:UZ (3.9) BS02 rna ? GO:0000462 ... P36144 32943521
    595467 6zqc:CD (3.8) BS01 rna ? GO:0000154 ... Q12460 32943521
    595468 6zqc:CD (3.8) BS02 rna ? GO:0000154 ... Q12460 32943521
    595469 6zqc:CE (3.8) BS01 rna ? GO:0000447 ... Q12499 32943521
    595470 6zqc:CE (3.8) BS02 rna ? GO:0000447 ... Q12499 32943521
    595471 6zqc:CF (3.8) BS01 rna ? GO:0000245 ... P39990 32943521
    595472 6zqc:CG (3.8) BS01 rna ? GO:0000245 ... P39990 32943521
    595473 6zqc:CH (3.8) BS01 rna ? GO:0000447 ... Q06506 32943521
    595474 6zqc:CI (3.8) BS01 rna ? GO:0003723 ... P32899 32943521
    595475 6zqc:CI (3.8) BS02 rna ? GO:0003723 ... P32899 32943521
    595476 6zqc:CJ (3.8) BS01 rna ? GO:0005515 ... P53941 32943521
    595477 6zqc:CJ (3.8) BS02 rna ? GO:0005515 ... P53941 32943521
    595478 6zqc:CK (3.8) BS01 rna ? GO:0000447 ... P47083 32943521
    595479 6zqc:CL (3.8) BS01 rna ? GO:0000462 ... Q08965 32943521
    595480 6zqc:CL (3.8) BS02 rna ? GO:0000462 ... Q08965 32943521
    595481 6zqc:CL (3.8) BS03 rna ? GO:0000462 ... Q08965 32943521
    595482 6zqc:CL (3.8) BS04 GTP ? GO:0000462 ... Q08965 32943521
    595483 6zqc:CM (3.8) BS01 rna ? GO:0000447 ... Q08096 32943521
    595484 6zqc:CN (3.8) BS01 rna ? GO:0000028 ... P25368 32943521
    595485 6zqc:DA (3.8) BS01 rna ? GO:0000462 ... P33442 32943521
    595486 6zqc:DE (3.8) BS01 rna ? GO:0002181 ... P0CX35 32943521
    595487 6zqc:DF (3.8) BS01 rna ? GO:0000028 ... P26783 32943521
    595488 6zqc:DG (3.8) BS01 rna ? GO:0000462 ... P0CX37 32943521
    595489 6zqc:DH (3.8) BS01 rna ? GO:0002181 ... P26786 32943521
    595490 6zqc:DI (3.8) BS01 rna ? GO:0000462 ... P0CX39 32943521
    595491 6zqc:DJ (3.8) BS01 rna ? GO:0000462 ... O13516 32943521
    595492 6zqc:DL (3.8) BS01 rna ? GO:0000028 ... P0CX47 32943521
    595493 6zqc:DN (3.8) BS01 rna ? GO:0000462 ... P05756 32943521
    595494 6zqc:DO (3.8) BS01 rna ? GO:0000028 ... P06367 32943521
    595495 6zqc:DQ (3.8) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595496 6zqc:DQ (3.8) BS02 rna ? GO:0000462 ... P0CX51 32943521
    595497 6zqc:DW (3.8) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595498 6zqc:DX (3.8) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595499 6zqc:DY (3.8) BS01 rna ? GO:0000462 ... P0CX31 32943521
    595500 6zqc:Db (3.8) BS01 rna ? GO:0000028 ... P35997 32943521
    595501 6zqc:Dc (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    595502 6zqc:JA (3.8) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943521
    595503 6zqc:JC (3.8) BS01 rna ? GO:0000462 ... P48234 32943521
    595504 6zqc:JG (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    595505 6zqc:JH (3.8) BS01 rna ? GO:0000447 ... P38333 32943521
    595506 6zqc:JJ (3.8) BS01 rna ? GO:0000056 ... Q99216 32943521
    595507 6zqc:JK (3.8) BS01 rna ? GO:0000462 ... Q06631 32943521
    595508 6zqc:JM (3.8) BS01 rna ? GO:0000447 ... Q12035 32943521
    595509 6zqc:JM (3.8) BS02 rna ? GO:0000447 ... Q12035 32943521
    595510 6zqc:JN (3.8) BS01 rna ? GO:0000462 ... P40546 32943521
    595511 6zqc:JN (3.8) BS02 rna ? GO:0000462 ... P40546 32943521
    595512 6zqc:JN (3.8) BS03 rna ? GO:0000462 ... P40546 32943521
    595513 6zqc:JO (3.8) BS01 rna ? GO:0000447 ... P25586 32943521
    595514 6zqc:JP (3.8) BS01 rna ? GO:0000462 ... P33750 32943521
    595515 6zqc:JP (3.8) BS02 rna ? GO:0000462 ... P33750 32943521
    595516 6zqc:JP (3.8) BS03 rna ? GO:0000462 ... P33750 32943521
    595517 6zqc:JQ (3.8) BS01 rna ? GO:0003674 ... P40470 32943521
    595518 6zqc:UA (3.8) BS01 rna ? GO:0000028 ... P25635 32943521
    595519 6zqc:UA (3.8) BS02 rna ? GO:0000028 ... P25635 32943521
    595520 6zqc:UA (3.8) BS03 rna ? GO:0000028 ... P25635 32943521
    595521 6zqc:UB (3.8) BS01 rna ? GO:0000028 ... Q99207 32943521
    595522 6zqc:UB (3.8) BS02 rna ? GO:0000028 ... Q99207 32943521
    595523 6zqc:UC (3.8) BS01 rna ? GO:0000447 ... Q12136 32943521
    595524 6zqc:UD (3.8) BS01 rna ? GO:0000462 ... Q06679 32943521
    595525 6zqc:UE (3.8) BS01 rna ? GO:0000462 ... Q04177 32943521
    595526 6zqc:UF (3.8) BS01 rna ? GO:0000447 ... Q02354 32943521
    595527 6zqc:UG (3.8) BS01 rna ? GO:0000447 ... P40055 32943521
    595528 6zqc:UG (3.8) BS02 rna ? GO:0000447 ... P40055 32943521
    595529 6zqc:UG (3.8) BS03 rna ? GO:0000447 ... P40055 32943521
    595530 6zqc:UJ (3.8) BS01 rna ? GO:0000447 ... P42945 32943521
    595531 6zqc:UK (3.8) BS01 rna ? GO:0000447 ... P34247 32943521
    595532 6zqc:UK (3.8) BS02 rna ? GO:0000447 ... P34247 32943521
    595533 6zqc:UK (3.8) BS03 rna ? GO:0000447 ... P34247 32943521
    595534 6zqc:UL (3.8) BS01 rna ? GO:0000447 ... Q12220 32943521
    595535 6zqc:UM (3.8) BS01 rna ? GO:0000447 ... Q05946 32943521
    595536 6zqc:UN (3.8) BS01 rna ? GO:0000447 ... Q04500 32943521
    595537 6zqc:UN (3.8) BS02 rna ? GO:0000447 ... Q04500 32943521
    595538 6zqc:UO (3.8) BS01 rna ? GO:0000462 ... Q04305 32943521
    595539 6zqc:UO (3.8) BS02 rna ? GO:0000462 ... Q04305 32943521
    595540 6zqc:UP (3.8) BS01 rna ? GO:0000447 ... Q08492 32943521
    595541 6zqc:UQ (3.8) BS01 rna ? GO:0000462 ... Q02931 32943521
    595542 6zqc:UQ (3.8) BS02 rna ? GO:0000462 ... Q02931 32943521
    595543 6zqc:UR (3.8) BS01 rna ? GO:0000292 ... P40362 32943521
    595544 6zqc:UR (3.8) BS02 rna ? GO:0000292 ... P40362 32943521
    595545 6zqc:US (3.8) BS01 rna ? GO:0000028 ... Q06512 32943521
    595546 6zqc:UT (3.8) BS01 rna ? GO:0000447 ... P35194 32943521
    595547 6zqc:UU (3.8) BS01 rna ? GO:0003674 ... Q06078 32943521
    595548 6zqc:UU (3.8) BS02 rna ? GO:0003674 ... Q06078 32943521
    595549 6zqc:UV (3.8) BS01 rna ? GO:0000028 ... P53254 32943521
    595550 6zqc:UX (3.8) BS01 rna ? GO:0000447 ... Q05498 32943521
    595551 6zqc:UX (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943521
    595552 6zqc:UZ (3.8) BS01 rna ? GO:0000462 ... P36144 32943521
    595553 6zqc:UZ (3.8) BS02 rna ? GO:0000462 ... P36144 32943521
    595554 6zqd:CA (3.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943521
    595555 6zqd:CB (3.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943521
    595556 6zqd:CD (3.8) BS01 rna ? GO:0000154 ... Q12460 32943521
    595557 6zqd:CE (3.8) BS01 rna ? GO:0000447 ... Q12499 32943521
    595558 6zqd:CF (3.8) BS01 rna ? GO:0000245 ... P39990 32943521
    595559 6zqd:CG (3.8) BS01 rna ? GO:0000245 ... P39990 32943521
    595560 6zqd:CH (3.8) BS01 rna ? GO:0000447 ... Q06506 32943521
    595561 6zqd:CI (3.8) BS01 rna ? GO:0003723 ... P32899 32943521
    595562 6zqd:CI (3.8) BS02 rna ? GO:0003723 ... P32899 32943521
    595563 6zqd:CJ (3.8) BS01 rna ? GO:0005515 ... P53941 32943521
    595564 6zqd:CK (3.8) BS01 rna ? GO:0000447 ... P47083 32943521
    595565 6zqd:CL (3.8) BS01 rna ? GO:0000462 ... Q08965 32943521
    595566 6zqd:CL (3.8) BS02 GTP ? GO:0000462 ... Q08965 32943521
    595567 6zqd:CL (3.8) BS03 MG ? GO:0000462 ... Q08965 32943521
    595568 6zqd:CM (3.8) BS01 rna ? GO:0000447 ... Q08096 32943521
    595569 6zqd:CN (3.8) BS01 rna ? GO:0000028 ... P25368 32943521
    595570 6zqd:DA (3.8) BS01 rna ? GO:0000462 ... P33442 32943521
    595571 6zqd:DE (3.8) BS01 rna ? GO:0002181 ... P0CX35 32943521
    595572 6zqd:DF (3.8) BS01 rna ? GO:0003723 ... A0A1L4AA68 32943521
    595573 6zqd:DG (3.8) BS01 rna ? GO:0000462 ... P0CX37 32943521
    595574 6zqd:DH (3.8) BS01 rna ? GO:0002181 ... P26786 32943521
    595575 6zqd:DI (3.8) BS01 rna ? GO:0000462 ... P0CX39 32943521
    595576 6zqd:DJ (3.8) BS01 rna ? GO:0000462 ... O13516 32943521
    595577 6zqd:DL (3.8) BS01 rna ? GO:0000028 ... P0CX47 32943521
    595578 6zqd:DN (3.8) BS01 rna ? GO:0000462 ... P05756 32943521
    595579 6zqd:DO (3.8) BS01 rna ? GO:0000028 ... P06367 32943521
    595580 6zqd:DQ (3.8) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595581 6zqd:DS (3.8) BS01 rna ? GO:0000054 ... P0CX55 32943521
    595582 6zqd:DT (3.8) BS01 rna ? GO:0000028 ... P07280 32943521
    595583 6zqd:DW (3.8) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595584 6zqd:DX (3.8) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595585 6zqd:DY (3.8) BS01 rna ? GO:0000462 ... P0CX31 32943521
    595586 6zqd:Db (3.8) BS01 rna ? GO:0000028 ... P35997 32943521
    595587 6zqd:Db (3.8) BS02 ZN ? GO:0000028 ... P35997 32943521
    595588 6zqd:Dc (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    595589 6zqd:JD (3.8) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    595590 6zqd:JG (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    595591 6zqd:JJ (3.8) BS01 rna ? GO:0000056 ... Q99216 32943521
    595592 6zqd:JL (3.8) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    595593 6zqd:JM (3.8) BS01 rna ? GO:0000447 ... Q12035 32943521
    595594 6zqd:JM (3.8) BS02 rna ? GO:0000447 ... Q12035 32943521
    595595 6zqd:JP (3.8) BS01 rna ? GO:0000462 ... P33750 32943521
    595596 6zqd:JP (3.8) BS02 rna ? GO:0000462 ... P33750 32943521
    595597 6zqd:UA (3.8) BS01 rna ? GO:0000028 ... P25635 32943521
    595598 6zqd:UB (3.8) BS01 rna ? GO:0000028 ... Q99207 32943521
    595599 6zqd:UC (3.8) BS01 rna ? GO:0000447 ... Q12136 32943521
    595600 6zqd:UC (3.8) BS02 rna ? GO:0000447 ... Q12136 32943521

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).