SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    595601 6zqd:UD (3.8) BS01 rna ? GO:0000462 ... Q06679 32943521
    595602 6zqd:UG (3.8) BS01 rna ? GO:0000447 ... P40055 32943521
    595603 6zqd:UG (3.8) BS02 rna ? GO:0000447 ... P40055 32943521
    595604 6zqd:UG (3.8) BS03 rna ? GO:0000447 ... P40055 32943521
    595605 6zqd:UJ (3.8) BS01 rna ? GO:0000447 ... P42945 32943521
    595606 6zqd:UK (3.8) BS01 rna ? GO:0000447 ... P34247 32943521
    595607 6zqd:UK (3.8) BS02 rna ? GO:0000447 ... P34247 32943521
    595608 6zqd:UL (3.8) BS01 rna ? GO:0000447 ... Q12220 32943521
    595609 6zqd:UM (3.8) BS01 rna ? GO:0000447 ... Q05946 32943521
    595610 6zqd:UO (3.8) BS01 rna ? GO:0000462 ... Q04305 32943521
    595611 6zqd:UO (3.8) BS02 rna ? GO:0000462 ... Q04305 32943521
    595612 6zqd:UQ (3.8) BS01 rna ? GO:0000462 ... Q02931 32943521
    595613 6zqd:UQ (3.8) BS02 rna ? GO:0000462 ... Q02931 32943521
    595614 6zqd:UR (3.8) BS01 rna ? GO:0000292 ... P40362 32943521
    595615 6zqd:UR (3.8) BS02 rna ? GO:0000292 ... P40362 32943521
    595616 6zqd:UT (3.8) BS01 rna ? GO:0000447 ... P35194 32943521
    595617 6zqd:UU (3.8) BS01 rna ? GO:0003674 ... Q06078 32943521
    595618 6zqd:UV (3.8) BS01 rna ? GO:0000028 ... P53254 32943521
    595619 6zqd:UX (3.8) BS01 rna ? GO:0000447 ... Q05498 32943521
    595620 6zqd:UX (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943521
    595621 6zqe:CE (7.1) BS01 rna ? GO:0000447 ... Q12499 32943521
    595622 6zqe:CE (7.1) BS02 rna ? GO:0000447 ... Q12499 32943521
    595623 6zqe:CF (7.1) BS01 rna ? GO:0000245 ... P39990 32943521
    595624 6zqe:CG (7.1) BS01 rna ? GO:0000245 ... P39990 32943521
    595625 6zqe:CH (7.1) BS01 rna ? GO:0000447 ... Q06506 32943521
    595626 6zqe:CH (7.1) BS02 rna ? GO:0000447 ... Q06506 32943521
    595627 6zqe:CJ (7.1) BS01 rna ? GO:0005515 ... P53941 32943521
    595628 6zqe:CK (7.1) BS01 rna ? GO:0000447 ... P47083 32943521
    595629 6zqe:CL (7.1) BS01 rna ? GO:0000462 ... Q08965 32943521
    595630 6zqe:CM (7.1) BS01 rna ? GO:0000447 ... Q08096 32943521
    595631 6zqe:CN (7.1) BS01 rna ? GO:0000028 ... P25368 32943521
    595632 6zqe:DA (7.1) BS01 rna ? GO:0000462 ... P33442 32943521
    595633 6zqe:DE (7.1) BS01 rna ? GO:0002181 ... P0CX35 32943521
    595634 6zqe:DF (7.1) BS01 rna ? GO:0000028 ... P26783 32943521
    595635 6zqe:DG (7.1) BS01 rna ? GO:0000462 ... P0CX37 32943521
    595636 6zqe:DH (7.1) BS01 rna ? GO:0002181 ... P26786 32943521
    595637 6zqe:DI (7.1) BS01 rna ? GO:0000462 ... P0CX39 32943521
    595638 6zqe:DJ (7.1) BS01 rna ? GO:0000462 ... O13516 32943521
    595639 6zqe:DL (7.1) BS01 rna ? GO:0000028 ... P0CX47 32943521
    595640 6zqe:DN (7.1) BS01 rna ? GO:0000462 ... P05756 32943521
    595641 6zqe:DO (7.1) BS01 rna ? GO:0000028 ... P06367 32943521
    595642 6zqe:DQ (7.1) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595643 6zqe:DS (7.1) BS01 rna ? GO:0000054 ... P0CX55 32943521
    595644 6zqe:DT (7.1) BS01 rna ? GO:0000028 ... P07280 32943521
    595645 6zqe:DW (7.1) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595646 6zqe:DX (7.1) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595647 6zqe:DY (7.1) BS01 rna ? GO:0000462 ... P0CX31 32943521
    595648 6zqe:Db (7.1) BS01 rna ? GO:0000028 ... P35997 32943521
    595649 6zqe:Db (7.1) BS02 ZN ? GO:0000028 ... P35997 32943521
    595650 6zqe:Dc (7.1) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    595651 6zqe:JD (7.1) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    595652 6zqe:JG (7.1) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    595653 6zqe:JJ (7.1) BS01 peptide ? GO:0000056 ... Q99216 32943521
    595654 6zqe:JJ (7.1) BS02 rna ? GO:0000056 ... Q99216 32943521
    595655 6zqe:JL (7.1) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    595656 6zqe:JM (7.1) BS01 rna ? GO:0000447 ... Q12035 32943521
    595657 6zqe:JM (7.1) BS02 rna ? GO:0000447 ... Q12035 32943521
    595658 6zqe:UA (7.1) BS01 rna ? GO:0000028 ... P25635 32943521
    595659 6zqe:UC (7.1) BS01 rna ? GO:0000447 ... Q12136 32943521
    595660 6zqe:UC (7.1) BS02 rna ? GO:0000447 ... Q12136 32943521
    595661 6zqe:UK (7.1) BS01 rna ? GO:0000447 ... P34247 32943521
    595662 6zqe:UK (7.1) BS02 rna ? GO:0000447 ... P34247 32943521
    595663 6zqe:UL (7.1) BS01 rna ? GO:0000447 ... Q12220 32943521
    595664 6zqe:UQ (7.1) BS01 rna ? GO:0000462 ... Q02931 32943521
    595665 6zqe:UT (7.1) BS01 rna ? GO:0000447 ... P35194 32943521
    595666 6zqe:UV (7.1) BS01 rna ? GO:0000028 ... P53254 32943521
    595667 6zqe:UX (7.1) BS01 rna ? GO:0000447 ... Q05498 32943521
    595668 6zqf:CJ (4.9) BS01 rna ? GO:0005515 ... P53941 32943521
    595669 6zqf:CK (4.9) BS01 rna ? GO:0000447 ... P47083 32943521
    595670 6zqf:CL (4.9) BS01 rna ? GO:0000462 ... Q08965 32943521
    595671 6zqf:CN (4.9) BS01 rna ? GO:0000028 ... P25368 32943521
    595672 6zqf:DA (4.9) BS01 rna ? GO:0000462 ... P33442 32943521
    595673 6zqf:DE (4.9) BS01 rna ? GO:0002181 ... P0CX35 32943521
    595674 6zqf:DF (4.9) BS01 rna ? GO:0000028 ... P26783 32943521
    595675 6zqf:DG (4.9) BS01 rna ? GO:0000462 ... P0CX37 32943521
    595676 6zqf:DH (4.9) BS01 rna ? GO:0002181 ... P26786 32943521
    595677 6zqf:DI (4.9) BS01 rna ? GO:0000462 ... P0CX39 32943521
    595678 6zqf:DJ (4.9) BS01 rna ? GO:0000462 ... O13516 32943521
    595679 6zqf:DL (4.9) BS01 rna ? GO:0000028 ... P0CX47 32943521
    595680 6zqf:DN (4.9) BS01 rna ? GO:0000462 ... P05756 32943521
    595681 6zqf:DO (4.9) BS01 rna ? GO:0000028 ... P06367 32943521
    595682 6zqf:DQ (4.9) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595683 6zqf:DS (4.9) BS01 rna ? GO:0000054 ... P0CX55 32943521
    595684 6zqf:DT (4.9) BS01 rna ? GO:0000028 ... P07280 32943521
    595685 6zqf:DW (4.9) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595686 6zqf:DX (4.9) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595687 6zqf:DY (4.9) BS01 rna ? GO:0000462 ... P0CX31 32943521
    595688 6zqf:Db (4.9) BS01 rna ? GO:0000028 ... P35997 32943521
    595689 6zqf:JD (4.9) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    595690 6zqf:JJ (4.9) BS01 rna ? GO:0000056 ... Q99216 32943521
    595691 6zqf:JL (4.9) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    595692 6zqf:UA (4.9) BS01 rna ? GO:0000028 ... P25635 32943521
    595693 6zqf:UA (4.9) BS02 rna ? GO:0000028 ... P25635 32943521
    595694 6zqf:UB (4.9) BS01 rna ? GO:0000028 ... Q99207 32943521
    595695 6zqf:UC (4.9) BS01 rna ? GO:0000447 ... Q12136 32943521
    595696 6zqf:UL (4.9) BS01 rna ? GO:0000447 ... Q12220 32943521
    595697 6zqf:UM (4.9) BS01 rna ? GO:0000447 ... Q05946 32943521
    595698 6zqf:UU (4.9) BS01 rna ? GO:0003674 ... Q06078 32943521
    595699 6zqg:CJ (3.5) BS01 rna ? GO:0005515 ... P53941 32943521
    595700 6zqg:CK (3.5) BS01 rna ? GO:0000447 ... P47083 32943521
    595701 6zqg:CL (3.5) BS01 rna ? GO:0000462 ... Q08965 32943521
    595702 6zqg:CL (3.5) BS02 GTP ? GO:0000462 ... Q08965 32943521
    595703 6zqg:CL (3.5) BS03 MG ? GO:0000462 ... Q08965 32943521
    595704 6zqg:CM (3.5) BS01 rna ? GO:0000447 ... Q08096 32943521
    595705 6zqg:DA (3.5) BS01 rna ? GO:0000462 ... P33442 32943521
    595706 6zqg:DE (3.5) BS01 rna ? GO:0002181 ... P0CX35 32943521
    595707 6zqg:DF (3.5) BS01 rna ? GO:0000028 ... P26783 32943521
    595708 6zqg:DG (3.5) BS01 rna ? GO:0000462 ... P0CX37 32943521
    595709 6zqg:DH (3.5) BS01 rna ? GO:0002181 ... P26786 32943521
    595710 6zqg:DI (3.5) BS01 rna ? GO:0000462 ... P0CX39 32943521
    595711 6zqg:DJ (3.5) BS01 rna ? GO:0000462 ... O13516 32943521
    595712 6zqg:DL (3.5) BS01 rna ? GO:0000028 ... P0CX47 32943521
    595713 6zqg:DN (3.5) BS01 rna ? GO:0000462 ... P05756 32943521
    595714 6zqg:DO (3.5) BS01 rna ? GO:0000028 ... P06367 32943521
    595715 6zqg:DQ (3.5) BS01 rna ? GO:0000462 ... P0CX51 32943521
    595716 6zqg:DS (3.5) BS01 rna ? GO:0003676 ... P0CX55 32943521
    595717 6zqg:DT (3.5) BS01 rna ? GO:0000028 ... P07280 32943521
    595718 6zqg:DW (3.5) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    595719 6zqg:DX (3.5) BS01 rna ? GO:0000462 ... P0CX29 32943521
    595720 6zqg:DY (3.5) BS01 rna ? GO:0000462 ... P0CX31 32943521
    595721 6zqg:DZ (3.5) BS01 rna ? GO:0002181 ... Q3E792 32943521
    595722 6zqg:Db (3.5) BS01 rna ? GO:0000028 ... P35997 32943521
    595723 6zqg:Dc (3.5) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    595724 6zqg:JD (3.5) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    595725 6zqg:JD (3.5) BS02 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    595726 6zqg:JG (3.5) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    595727 6zqg:JJ (3.5) BS01 rna ? GO:0000056 ... Q99216 32943521
    595728 6zqg:JL (3.5) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    595729 6zqg:JL (3.5) BS02 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    595730 6zqg:UB (3.5) BS01 rna ? GO:0000028 ... Q99207 32943521
    595731 6zqg:UC (3.5) BS01 rna ? GO:0000447 ... Q12136 32943521
    595732 6zqg:UN (3.5) BS01 rna ? GO:0000447 ... Q04500 32943521
    595733 6zqg:UN (3.5) BS02 rna ? GO:0000447 ... Q04500 32943521
    595734 6zqg:UX (3.5) BS01 rna ? GO:0000447 ... Q05498 32943521
    595735 6zqg:UX (3.5) BS02 ZN ? GO:0000447 ... Q05498 32943521
    595736 6zqm:A (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    595737 6zqm:B (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    595738 6zqm:C (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    595739 6zqm:D (3.29) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595740 6zqm:E (3.29) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 32900941
    595741 6zqm:E (3.29) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595742 6zqm:F (3.29) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595743 6zqm:F (3.29) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    595744 6zqm:a (3.29) BS01 CDL ? GO:0005739 ... P00847 32900941
    595745 6zqm:a (3.29) BS02 CDL ? GO:0005739 ... P00847 32900941
    595746 6zqm:b (3.29) BS01 CDL ? GO:0015078 ... P13619 32900941
    595747 6zqm:b (3.29) BS02 CDL ? GO:0015078 ... P13619 32900941
    595748 6zqm:f (3.29) BS01 CDL ? GO:0005739 ... Q28851 32900941
    595749 6zqm:f (3.29) BS02 CDL ? GO:0005739 ... Q28851 32900941
    595750 6zqn:A (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    595751 6zqn:B (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    595752 6zqn:C (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    595753 6zqn:D (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595754 6zqn:D (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    595755 6zqn:E (4.0) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 32900941
    595756 6zqn:E (4.0) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595757 6zqn:F (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    595758 6zqn:F (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    595759 6zqn:a (4.0) BS01 CDL ? GO:0005739 ... P00847 32900941
    595760 6zqn:a (4.0) BS02 CDL ? GO:0005739 ... P00847 32900941
    595761 6zqn:b (4.0) BS01 CDL ? GO:0015078 ... P13619 32900941
    595762 6zqn:b (4.0) BS02 CDL ? GO:0015078 ... P13619 32900941
    595763 6zqn:f (4.0) BS01 CDL ? GO:0005739 ... Q28851 32900941
    595764 6zqn:f (4.0) BS02 CDL ? GO:0005739 ... Q28851 32900941
    595765 6zqn:f (4.0) BS03 CDL ? GO:0005739 ... Q28851 32900941
    595766 6zqr:A (1.93) BS01 CA ? N/A Q8N539 N/A
    595767 6zqr:B (1.93) BS01 CA ? N/A Q8N539 N/A
    595768 6zqs:A (1.95) BS01 peptide 2.7.11.24 GO:0000077 ... Q16539 33188182
    595769 6zqs:A (1.95) BS02 3FF 2.7.11.24 GO:0000077 ... Q16539 33188182 BindingDB: IC50=40nM
    595770 6zqt:A (1.51) BS01 GNP 3.6.5.2 GO:0001928 ... P11234 33214225
    595771 6zqt:A (1.51) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    595772 6zqt:B (1.51) BS01 GNP 3.6.5.2 GO:0001928 ... P11234 33214225
    595773 6zqt:B (1.51) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    595774 6zqx:A (1.84) BS01 CA ? N/A Q8N539 N/A
    595775 6zqx:B (1.84) BS01 CA ? N/A Q8N539 N/A
    595776 6zqy:A (1.85) BS01 CA ? N/A Q8N539 N/A
    595777 6zqy:A (1.85) BS02 SLB ? N/A Q8N539 N/A
    595778 6zqy:B (1.85) BS01 CA ? N/A Q8N539 N/A
    595779 6zqz:A (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    595780 6zqz:A (1.88) BS02 QOQ 3.1.4.17 GO:0004114 ... O00408 33105987 MOAD: ic50=24nM
    595781 6zqz:B (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    595782 6zqz:B (1.88) BS02 QOQ 3.1.4.17 GO:0004114 ... O00408 33105987 MOAD: ic50=24nM
    595783 6zqz:C (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    595784 6zqz:C (1.88) BS02 QOQ 3.1.4.17 GO:0004114 ... O00408 33105987 MOAD: ic50=24nM
    595785 6zqz:D (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 33105987
    595786 6zqz:D (1.88) BS02 QOQ 3.1.4.17 GO:0004114 ... O00408 33105987 MOAD: ic50=24nM
    595787 6zr0:A (1.94) BS01 CA ? N/A Q8N539 N/A
    595788 6zr0:A (1.94) BS02 AYA ? N/A Q8N539 N/A
    595789 6zr0:B (1.94) BS01 FUC ? N/A Q8N539 N/A
    595790 6zr0:B (1.94) BS02 CA ? N/A Q8N539 N/A
    595791 6zr0:B (1.94) BS03 AYA ? N/A Q8N539 N/A
    595792 6zr2:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 33067417
    595793 6zr2:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 33067417
    595794 6zr2:E (3.1) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33067417
    595795 6zr2:F (3.1) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    595796 6zr2:F (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    595797 6zr2:G (3.1) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    595798 6zr2:G (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    595799 6zr2:G (3.1) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    595800 6zr2:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).