SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    59401 1vy7:AD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    59402 1vy7:AE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    59403 1vy7:AE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    59404 1vy7:AE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    59405 1vy7:AF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    59406 1vy7:AG (2.8) BS01 rna ? GO:0000049 ... P17291 25132179
    59407 1vy7:AH (2.8) BS01 rna N/A GO:0003735 ... P0DOY9 25132179
    59408 1vy7:AI (2.8) BS01 rna ? GO:0003723 ... P80374 25132179
    59409 1vy7:AI (2.8) BS02 rna ? GO:0003723 ... P80374 25132179
    59410 1vy7:AJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    59411 1vy7:AK (2.8) BS01 rna ? GO:0003735 ... P80376 25132179
    59412 1vy7:AK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    59413 1vy7:AL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    59414 1vy7:AL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    59415 1vy7:AM (2.8) BS01 rna ? GO:0000049 ... P80377 25132179
    59416 1vy7:AM (2.8) BS02 rna ? GO:0000049 ... P80377 25132179
    59417 1vy7:AM (2.8) BS03 rna ? GO:0000049 ... P80377 25132179
    59418 1vy7:AM (2.8) BS04 MG ? GO:0000049 ... P80377 25132179
    59419 1vy7:AN (2.8) BS01 rna N/A GO:0003735 ... P0DOY6 25132179
    59420 1vy7:AN (2.8) BS02 ZN N/A GO:0003735 ... P0DOY6 25132179
    59421 1vy7:AO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    59422 1vy7:AO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    59423 1vy7:AP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    59424 1vy7:AQ (2.8) BS01 rna N/A GO:0003735 ... P0DOY7 25132179
    59425 1vy7:AR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    59426 1vy7:AS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    59427 1vy7:AT (2.8) BS01 rna ? GO:0003723 ... P80380 25132179
    59428 1vy7:B0 (2.8) BS01 rna ? GO:0003735 ... P60493 25132179
    59429 1vy7:B0 (2.8) BS02 rna ? GO:0003735 ... P60493 25132179
    59430 1vy7:B0 (2.8) BS03 rna ? GO:0003735 ... P60493 25132179
    59431 1vy7:B0 (2.8) BS04 MG ? GO:0003735 ... P60493 25132179
    59432 1vy7:B0 (2.8) BS05 MG ? GO:0003735 ... P60493 25132179
    59433 1vy7:B0 (2.8) BS06 MG ? GO:0003735 ... P60493 25132179
    59434 1vy7:B1 (2.8) BS01 rna ? GO:0003735 ... P60494 25132179
    59435 1vy7:B1 (2.8) BS02 rna ? GO:0003735 ... P60494 25132179
    59436 1vy7:B1 (2.8) BS03 MG ? GO:0003735 ... P60494 25132179
    59437 1vy7:B2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    59438 1vy7:B3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    59439 1vy7:B3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    59440 1vy7:B3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    59441 1vy7:B4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    59442 1vy7:B4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    59443 1vy7:B5 (2.8) BS01 rna ? GO:0003735 ... P80339 25132179
    59444 1vy7:B5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    59445 1vy7:B5 (2.8) BS03 MG ? GO:0003735 ... P80339 25132179
    59446 1vy7:B5 (2.8) BS04 ZN ? GO:0003735 ... P80339 25132179
    59447 1vy7:B6 (2.8) BS01 rna ? GO:0003735 ... P35871 25132179
    59448 1vy7:B6 (2.8) BS02 ZN ? GO:0003735 ... P35871 25132179
    59449 1vy7:B7 (2.8) BS01 rna ? GO:0003735 ... P80340 25132179
    59450 1vy7:B7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    59451 1vy7:B8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    59452 1vy7:B9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    59453 1vy7:B9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    59454 1vy7:BD (2.8) BS01 rna ? GO:0002181 ... P60405 25132179
    59455 1vy7:BD (2.8) BS02 rna ? GO:0002181 ... P60405 25132179
    59456 1vy7:BD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    59457 1vy7:BD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    59458 1vy7:BD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    59459 1vy7:BD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    59460 1vy7:BD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    59461 1vy7:BD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    59462 1vy7:BD (2.8) BS09 MG ? GO:0002181 ... P60405 25132179
    59463 1vy7:BD (2.8) BS10 MG ? GO:0002181 ... P60405 25132179
    59464 1vy7:BD (2.8) BS11 MG ? GO:0002181 ... P60405 25132179
    59465 1vy7:BD (2.8) BS12 MG ? GO:0002181 ... P60405 25132179
    59466 1vy7:BE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    59467 1vy7:BE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    59468 1vy7:BE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    59469 1vy7:BE (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    59470 1vy7:BE (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 25132179
    59471 1vy7:BF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    59472 1vy7:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    59473 1vy7:BF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    59474 1vy7:BF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    59475 1vy7:BF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    59476 1vy7:BF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    59477 1vy7:BG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    59478 1vy7:BG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    59479 1vy7:BG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    59480 1vy7:BH (2.8) BS01 rna N/A GO:0002181 ... P0DOY8 25132179
    59481 1vy7:BI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    59482 1vy7:BN (2.8) BS01 rna ? GO:0003729 ... P60488 25132179
    59483 1vy7:BN (2.8) BS02 MG ? GO:0003729 ... P60488 25132179
    59484 1vy7:BN (2.8) BS03 MG ? GO:0003729 ... P60488 25132179
    59485 1vy7:BN (2.8) BS04 MG ? GO:0003729 ... P60488 25132179
    59486 1vy7:BO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    59487 1vy7:BO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    59488 1vy7:BP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    59489 1vy7:BP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    59490 1vy7:BP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    59491 1vy7:BQ (2.8) BS01 rna ? GO:0003735 ... P60489 25132179
    59492 1vy7:BQ (2.8) BS02 rna ? GO:0003735 ... P60489 25132179
    59493 1vy7:BQ (2.8) BS03 MG ? GO:0003735 ... P60489 25132179
    59494 1vy7:BQ (2.8) BS04 MG ? GO:0003735 ... P60489 25132179
    59495 1vy7:BQ (2.8) BS05 MG ? GO:0003735 ... P60489 25132179
    59496 1vy7:BQ (2.8) BS06 MG ? GO:0003735 ... P60489 25132179
    59497 1vy7:BR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    59498 1vy7:BR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    59499 1vy7:BR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    59500 1vy7:BR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25132179
    59501 1vy7:BS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    59502 1vy7:BS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    59503 1vy7:BT (2.8) BS01 rna ? GO:0003735 ... P60490 25132179
    59504 1vy7:BT (2.8) BS02 rna ? GO:0003735 ... P60490 25132179
    59505 1vy7:BU (2.8) BS01 rna ? GO:0000027 ... P60491 25132179
    59506 1vy7:BU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    59507 1vy7:BU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    59508 1vy7:BU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    59509 1vy7:BU (2.8) BS05 MG ? GO:0000027 ... P60491 25132179
    59510 1vy7:BU (2.8) BS06 MG ? GO:0000027 ... P60491 25132179
    59511 1vy7:BU (2.8) BS07 MG ? GO:0000027 ... P60491 25132179
    59512 1vy7:BU (2.8) BS08 MG ? GO:0000027 ... P60491 25132179
    59513 1vy7:BV (2.8) BS01 rna ? GO:0003723 ... P60492 25132179
    59514 1vy7:BV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    59515 1vy7:BV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    59516 1vy7:BV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    59517 1vy7:BV (2.8) BS05 MG ? GO:0003723 ... P60492 25132179
    59518 1vy7:BV (2.8) BS06 MG ? GO:0003723 ... P60492 25132179
    59519 1vy7:BW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    59520 1vy7:BW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    59521 1vy7:BW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    59522 1vy7:BX (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 25132179
    59523 1vy7:BX (2.8) BS02 MG ? GO:0003735 ... Q5SHP0 25132179
    59524 1vy7:BX (2.8) BS03 MG ? GO:0003735 ... Q5SHP0 25132179
    59525 1vy7:BY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    59526 1vy7:BY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    59527 1vy7:BZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    59528 1vy7:BZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    59529 1vy7:CB (2.8) BS01 rna ? GO:0003735 ... P80371 25132179
    59530 1vy7:CC (2.8) BS01 rna ? GO:0003676 ... P80372 25132179
    59531 1vy7:CD (2.8) BS01 rna ? GO:0003723 ... P80373 25132179
    59532 1vy7:CD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    59533 1vy7:CE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    59534 1vy7:CE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    59535 1vy7:CE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    59536 1vy7:CF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    59537 1vy7:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    59538 1vy7:CG (2.8) BS01 rna ? GO:0000049 ... P17291 25132179
    59539 1vy7:CH (2.8) BS01 rna N/A GO:0003735 ... P0DOY9 25132179
    59540 1vy7:CI (2.8) BS01 rna ? GO:0003723 ... P80374 25132179
    59541 1vy7:CI (2.8) BS02 rna ? GO:0003723 ... P80374 25132179
    59542 1vy7:CJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    59543 1vy7:CK (2.8) BS01 rna ? GO:0003735 ... P80376 25132179
    59544 1vy7:CK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    59545 1vy7:CL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    59546 1vy7:CM (2.8) BS01 rna ? GO:0000049 ... P80377 25132179
    59547 1vy7:CM (2.8) BS02 rna ? GO:0000049 ... P80377 25132179
    59548 1vy7:CN (2.8) BS01 rna N/A GO:0003735 ... P0DOY6 25132179
    59549 1vy7:CN (2.8) BS02 ZN N/A GO:0003735 ... P0DOY6 25132179
    59550 1vy7:CO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    59551 1vy7:CO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    59552 1vy7:CP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    59553 1vy7:CQ (2.8) BS01 rna N/A GO:0003735 ... P0DOY7 25132179
    59554 1vy7:CR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    59555 1vy7:CS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    59556 1vy7:CT (2.8) BS01 rna ? GO:0003723 ... P80380 25132179
    59557 1vy7:CT (2.8) BS02 MG ? GO:0003723 ... P80380 25132179
    59558 1vy7:D0 (2.8) BS01 rna ? GO:0003735 ... P60493 25132179
    59559 1vy7:D0 (2.8) BS02 rna ? GO:0003735 ... P60493 25132179
    59560 1vy7:D0 (2.8) BS03 rna ? GO:0003735 ... P60493 25132179
    59561 1vy7:D1 (2.8) BS01 rna ? GO:0003735 ... P60494 25132179
    59562 1vy7:D1 (2.8) BS02 rna ? GO:0003735 ... P60494 25132179
    59563 1vy7:D2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    59564 1vy7:D3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    59565 1vy7:D3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    59566 1vy7:D3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    59567 1vy7:D4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    59568 1vy7:D4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    59569 1vy7:D5 (2.8) BS01 rna ? GO:0003735 ... P80339 25132179
    59570 1vy7:D5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    59571 1vy7:D5 (2.8) BS03 ZN ? GO:0003735 ... P80339 25132179
    59572 1vy7:D6 (2.8) BS01 rna ? GO:0003735 ... P35871 25132179
    59573 1vy7:D6 (2.8) BS02 ZN ? GO:0003735 ... P35871 25132179
    59574 1vy7:D7 (2.8) BS01 rna ? GO:0003735 ... P80340 25132179
    59575 1vy7:D7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    59576 1vy7:D8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    59577 1vy7:D9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    59578 1vy7:D9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    59579 1vy7:DD (2.8) BS01 rna ? GO:0002181 ... P60405 25132179
    59580 1vy7:DD (2.8) BS02 rna ? GO:0002181 ... P60405 25132179
    59581 1vy7:DD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    59582 1vy7:DD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    59583 1vy7:DD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    59584 1vy7:DD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    59585 1vy7:DD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    59586 1vy7:DD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    59587 1vy7:DE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    59588 1vy7:DE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    59589 1vy7:DE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    59590 1vy7:DF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    59591 1vy7:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    59592 1vy7:DF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    59593 1vy7:DF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    59594 1vy7:DF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    59595 1vy7:DG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    59596 1vy7:DG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    59597 1vy7:DG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    59598 1vy7:DH (2.8) BS01 rna N/A GO:0002181 ... P0DOY8 25132179
    59599 1vy7:DI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    59600 1vy7:DN (2.8) BS01 rna ? GO:0003729 ... P60488 25132179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).