SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    595801 6zr2:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    595802 6zr2:O (3.1) BS01 ATP ? GO:0005739 ... Q99LC3 33067417
    595803 6zr2:P (3.1) BS01 NDP ? GO:0003954 ... Q9DC69 33067417
    595804 6zr2:R (3.1) BS01 ZN ? GO:0001822 ... P52503 33067417
    595805 6zr2:T (3.1) BS01 EHZ ? GO:0005654 ... Q9CR21 33067417
    595806 6zr2:U (3.1) BS01 EHZ ? GO:0005654 ... Q9CR21 33067417
    595807 6zr2:W (3.1) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33067417
    595808 6zr2:n (3.1) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33067417
    595809 6zr3:A (1.97) BS01 CA ? N/A Q8N539 N/A
    595810 6zr3:A (1.97) BS02 ASG ? N/A Q8N539 N/A
    595811 6zr3:B (1.97) BS01 CA ? N/A Q8N539 N/A
    595812 6zr4:A (2.0) BS01 CA ? N/A Q8N539 N/A
    595813 6zr4:B (2.0) BS01 CA ? N/A Q8N539 N/A
    595814 6zr5:A (2.699) BS01 ANP 2.7.11.24 GO:0004672 ... P45983 33188182
    595815 6zr5:B (2.699) BS01 ANP 2.7.11.24 GO:0004672 ... P45983 33188182
    595816 6zr5:C (2.699) BS01 ZN 2.3.1.48 N/A P15336 33188182
    595817 6zr5:D (2.699) BS01 ZN 2.3.1.48 N/A P15336 33188182
    595818 6zr6:A (1.5) BS01 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    595819 6zr6:A (1.5) BS02 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    595820 6zr6:A (1.5) BS03 F45 1.1.1.62 GO:0004303 ... Q9BPX1 N/A BindingDB: Ki=7.0nM
    595821 6zr7:AAA (1.85) BS01 SIA ? N/A O60469 33263330
    595822 6zr8:A (1.79) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    595823 6zr8:A (1.79) BS02 QOZ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A BindingDB: Ki=43nM
    595824 6zr9:A (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... P43166 N/A
    595825 6zr9:A (2.05) BS02 QOZ 4.2.1.1 GO:0004089 ... P43166 N/A BindingDB: Ki=8.9nM
    595826 6zra:A (1.73) BS01 QFT 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    595827 6zra:A (1.73) BS02 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    595828 6zra:A (1.73) BS03 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    595829 6zrb:A (1.55) BS01 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    595830 6zrb:A (1.55) BS02 QON 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    595831 6zrb:A (1.55) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    595832 6zrb:A (1.55) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    595833 6zrb:A (1.55) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    595834 6zrc:A (2.6) BS01 peptide ? GO:0000118 ... Q09028 33022847
    595835 6zrc:B (2.6) BS01 peptide ? GO:0000118 ... Q09028 33022847
    595836 6zrc:B (2.6) BS02 peptide ? GO:0000118 ... Q09028 33022847
    595837 6zrd:A (2.5) BS01 peptide ? GO:0000118 ... Q09028 33022847
    595838 6zrd:B (2.5) BS01 peptide ? GO:0000118 ... Q09028 33022847
    595839 6zrg:A (1.74) BS01 QP2 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595840 6zrh:A (1.88) BS01 2RG 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595841 6zrh:B (1.88) BS01 2RG 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595842 6zrh:C (1.88) BS01 2RG 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595843 6zrh:D (1.88) BS01 2RG 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595844 6zri:A (1.6) BS01 DWZ 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595845 6zri:B (1.6) BS01 DWZ 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595846 6zri:C (1.6) BS01 DWZ 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595847 6zri:D (1.6) BS01 DWZ 3.5.2.6 GO:0005886 ... Q7BNC2 N/A
    595848 6zrj:A (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595849 6zrj:B (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595850 6zrj:C (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595851 6zrj:D (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595852 6zrj:E (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595853 6zrj:F (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595854 6zrj:G (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595855 6zrj:H (1.94) BS01 2RG 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595856 6zrn:A (1.482) BS01 GNP 3.6.5.2 GO:0001928 ... P11234 33214225
    595857 6zrn:A (1.482) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    595858 6zrn:B (1.482) BS01 GNP 3.6.5.2 GO:0001928 ... P11234 33214225
    595859 6zrn:B (1.482) BS02 MG 3.6.5.2 GO:0001928 ... P11234 33214225
    595860 6zrp:A (1.74) BS01 DWZ 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595861 6zrp:B (1.74) BS01 DWZ 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595862 6zrp:C (1.74) BS01 DWZ 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595863 6zrp:D (1.74) BS01 DWZ 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    595864 6zrt:A (2.1) BS01 SV6 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 34041486
    595865 6zru:A (2.1) BS01 U5G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 34041486
    595866 6zrw:A (1.35) BS01 P3C ? GO:0030246 ... B3VS76 35323921
    595867 6zrw:D (1.35) BS01 PC4 ? GO:0030246 ... B3VS76 35323921
    595868 6zrw:D (1.35) BS02 PC4 ? GO:0030246 ... B3VS76 35323921
    595869 6zrx:AAA (1.7) BS01 6C7 ? GO:0009820 ... Q2MFY2 33249189
    595870 6zrx:AAA (1.7) BS02 TRP ? GO:0009820 ... Q2MFY2 33249189
    595871 6zrx:BBB (1.7) BS01 6C7 ? GO:0009820 ... Q2MFY2 33249189
    595872 6zrx:BBB (1.7) BS02 TRP ? GO:0009820 ... Q2MFY2 33249189
    595873 6zrx:CCC (1.7) BS01 6C7 ? GO:0009820 ... Q2MFY2 33249189
    595874 6zrx:CCC (1.7) BS02 TRP ? GO:0009820 ... Q2MFY2 33249189
    595875 6zrx:DDD (1.7) BS01 6C7 ? GO:0009820 ... Q2MFY2 33249189
    595876 6zrx:DDD (1.7) BS02 TRP ? GO:0009820 ... Q2MFY2 33249189
    595877 6zry:AAA (1.652) BS01 TRP ? GO:0009820 ... Q2MFY2 33249189
    595878 6zry:BBB (1.652) BS01 TRP ? GO:0009820 ... Q2MFY2 33249189
    595879 6zrz:AAA (1.696) BS01 6C7 N/A GO:0009820 ... N/A 33249189
    595880 6zrz:AAA (1.696) BS02 TRP N/A GO:0009820 ... N/A 33249189
    595881 6zrz:BBB (1.696) BS01 TRP N/A GO:0009820 ... N/A 33249189
    595882 6zrz:BBB (1.696) BS02 6C7 N/A GO:0009820 ... N/A 33249189
    595883 6zs1:A (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595884 6zs1:B (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595885 6zs1:C (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595886 6zs1:C (1.56) BS02 CU 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595887 6zs1:D (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595888 6zs1:D (1.56) BS02 CU 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595889 6zs1:E (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595890 6zs1:E (1.56) BS02 CU 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595891 6zs1:F (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595892 6zs1:F (1.56) BS02 CU 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595893 6zs1:G (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595894 6zs1:H (1.56) BS01 ZN 1.15.1.1 GO:0004784 ... G0S1F8 33726638
    595895 6zs2:A (1.57) BS01 FX5 3.6.4.- GO:0006338 ... P51532 33216538
    595896 6zs2:B (1.57) BS01 FX5 3.6.4.- GO:0006338 ... P51532 33216538
    595897 6zs3:A (1.67) BS01 FX5 ? GO:0006338 ... Q86U86 33216538
    595898 6zs3:B (1.67) BS01 FX5 ? GO:0006338 ... Q86U86 33216538
    595899 6zs4:A (2.0) BS01 QP8 ? GO:0006338 ... Q86U86 33216538
    595900 6zs7:A (3.5) BS01 P1T 4.2.1.22 GO:0004122 ... B6KBE8 34194677
    595901 6zs7:B (3.5) BS01 P1T 4.2.1.22 GO:0004122 ... B6KBE8 34194677
    595902 6zs7:C (3.5) BS01 P1T 4.2.1.22 GO:0004122 ... B6KBE8 34194677
    595903 6zs7:D (3.5) BS01 P1T 4.2.1.22 GO:0004122 ... B6KBE8 34194677
    595904 6zs7:E (3.5) BS01 P1T 4.2.1.22 GO:0004122 ... B6KBE8 34194677
    595905 6zs7:F (3.5) BS01 P1T 4.2.1.22 GO:0004122 ... B6KBE8 34194677
    595906 6zs8:AAA (2.153) BS01 A6R 3.2.1.17 GO:0003796 ... P00698 33320144
    595907 6zs9:0 (4.0) BS01 rna ? GO:0003723 ... Q9BYC8 32812867
    595908 6zs9:0 (4.0) BS02 ZN ? GO:0003723 ... Q9BYC8 32812867
    595909 6zs9:1 (4.0) BS01 rna ? GO:0003735 ... O75394 32812867
    595910 6zs9:2 (4.0) BS01 rna ? GO:0003735 ... Q9BQ48 32812867
    595911 6zs9:3 (4.0) BS01 rna ? GO:0003735 ... Q9NZE8 32812867
    595912 6zs9:4 (4.0) BS01 rna ? GO:0003735 ... Q9P0J6 32812867
    595913 6zs9:4 (4.0) BS02 ZN ? GO:0003735 ... Q9P0J6 32812867
    595914 6zs9:5 (4.0) BS01 rna ? GO:0003723 ... Q9BZE1 32812867
    595915 6zs9:6 (4.0) BS01 rna ? GO:0005515 ... Q96DV4 32812867
    595916 6zs9:6 (4.0) BS02 rna ? GO:0005515 ... Q96DV4 32812867
    595917 6zs9:8 (4.0) BS01 rna ? GO:0003723 ... Q9NQ50 32812867
    595918 6zs9:9 (4.0) BS01 rna ? GO:0003723 ... Q8IXM3 32812867
    595919 6zs9:A0 (4.0) BS01 rna ? GO:0003735 ... P82930 32812867
    595920 6zs9:A2 (4.0) BS01 rna ? GO:0001650 ... Q96BP2 32812867
    595921 6zs9:A3 (4.0) BS01 rna ? GO:0005515 ... Q9NWT8 32812867
    595922 6zs9:A5 (4.0) BS01 rna ? GO:0006412 ... Q96E11 32812867
    595923 6zs9:AB (4.0) BS01 rna ? GO:0003735 ... Q9Y399 32812867
    595924 6zs9:AB (4.0) BS02 ZN ? GO:0003735 ... Q9Y399 32812867
    595925 6zs9:AC (4.0) BS01 rna ? GO:0003723 ... Q96EL2 32812867
    595926 6zs9:AD (4.0) BS01 rna ? GO:0003723 ... P82675 32812867
    595927 6zs9:AE (4.0) BS01 rna ? GO:0003735 ... P82932 32812867
    595928 6zs9:AF (4.0) BS01 rna ? GO:0000028 ... Q9Y2R9 32812867
    595929 6zs9:AG (4.0) BS01 rna ? GO:0003723 ... P82933 32812867
    595930 6zs9:AH (4.0) BS01 rna ? GO:0005739 ... P82664 32812867
    595931 6zs9:AI (4.0) BS01 rna ? GO:0003723 ... P82912 32812867
    595932 6zs9:AJ (4.0) BS01 rna ? GO:0003723 ... O15235 32812867
    595933 6zs9:AK (4.0) BS01 rna ? GO:0003723 ... O60783 32812867
    595934 6zs9:AL (4.0) BS01 rna ? GO:0003723 ... P82914 32812867
    595935 6zs9:AM (4.0) BS01 rna ? GO:0003735 ... Q9Y3D3 32812867
    595936 6zs9:AN (4.0) BS01 rna ? GO:0003735 ... Q9Y2R5 32812867
    595937 6zs9:AO (4.0) BS01 rna ? GO:0003735 ... Q9Y676 32812867
    595938 6zs9:AO (4.0) BS02 ZN ? GO:0003735 ... Q9Y676 32812867
    595939 6zs9:AP (4.0) BS01 rna ? GO:0003735 ... Q9Y3D5 32812867
    595940 6zs9:AP (4.0) BS02 ZN ? GO:0003735 ... Q9Y3D5 32812867
    595941 6zs9:AQ (4.0) BS01 rna ? GO:0003723 ... P82921 32812867
    595942 6zs9:AS (4.0) BS01 rna ? GO:0003723 ... Q9Y3D9 32812867
    595943 6zs9:AT (4.0) BS01 rna ? GO:0003735 ... P82663 32812867
    595944 6zs9:AT (4.0) BS02 ZN ? GO:0003735 ... P82663 32812867
    595945 6zs9:AU (4.0) BS01 rna ? GO:0003723 ... Q9BYN8 32812867
    595946 6zs9:AV (4.0) BS01 rna ? GO:0000049 ... Q92552 32812867
    595947 6zs9:AX (4.0) BS01 rna ? GO:0005761 ... P51398 32812867
    595948 6zs9:AX (4.0) BS02 GTP ? GO:0005761 ... P51398 32812867
    595949 6zs9:AZ (4.0) BS01 rna ? GO:0003735 ... Q9Y291 32812867
    595950 6zs9:XD (4.0) BS01 rna ? GO:0003723 ... Q5T653 32812867
    595951 6zs9:XE (4.0) BS01 rna ? GO:0003723 ... P09001 32812867
    595952 6zs9:XF (4.0) BS01 rna ? GO:0003723 ... Q9BYD3 32812867
    595953 6zs9:XH (4.0) BS01 rna ? GO:0003723 ... Q9BYD2 32812867
    595954 6zs9:XI (4.0) BS01 rna ? GO:0003723 ... Q7Z7H8 32812867
    595955 6zs9:XI (4.0) BS02 peptide ? GO:0003723 ... Q7Z7H8 32812867
    595956 6zs9:XI (4.0) BS03 peptide ? GO:0003723 ... Q7Z7H8 32812867
    595957 6zs9:XI (4.0) BS04 peptide ? GO:0003723 ... Q7Z7H8 32812867
    595958 6zs9:XJ (4.0) BS01 rna ? GO:0003723 ... Q9Y3B7 32812867
    595959 6zs9:XK (4.0) BS01 rna ? GO:0003723 ... Q9BYD1 32812867
    595960 6zs9:XL (4.0) BS01 rna ? GO:0003723 ... Q6P1L8 32812867
    595961 6zs9:XL (4.0) BS02 rna ? GO:0003723 ... Q6P1L8 32812867
    595962 6zs9:XM (4.0) BS01 rna ? GO:0003723 ... Q9P015 32812867
    595963 6zs9:XM (4.0) BS02 MG ? GO:0003723 ... Q9P015 32812867
    595964 6zs9:XN (4.0) BS01 rna ? GO:0003735 ... Q9NX20 32812867
    595965 6zs9:XO (4.0) BS01 rna ? GO:0003735 ... Q9NRX2 32812867
    595966 6zs9:XP (4.0) BS01 rna ? GO:0003735 ... A8K9D2 32812867
    595967 6zs9:XP (4.0) BS02 rna ? GO:0003735 ... A8K9D2 32812867
    595968 6zs9:XQ (4.0) BS01 rna ? GO:0003735 ... P49406 32812867
    595969 6zs9:XR (4.0) BS01 rna ? GO:0003723 ... Q9BYC9 32812867
    595970 6zs9:XS (4.0) BS01 rna ? GO:0003723 ... Q7Z2W9 32812867
    595971 6zs9:XT (4.0) BS01 rna ? GO:0003735 ... E7ESL0 32812867
    595972 6zs9:XU (4.0) BS01 rna ? GO:0001650 ... Q16540 32812867
    595973 6zs9:XV (4.0) BS01 rna ? GO:0003723 ... Q96A35 32812867
    595974 6zs9:XW (4.0) BS01 rna ? GO:0003723 ... Q9P0M9 32812867
    595975 6zs9:XX (4.0) BS01 rna ? GO:0003723 ... Q13084 32812867
    595976 6zs9:XY (4.0) BS01 rna ? GO:0003735 ... Q9HD33 32812867
    595977 6zs9:XZ (4.0) BS01 rna ? GO:0003735 ... Q8TCC3 32812867
    595978 6zs9:a (4.0) BS01 rna ? GO:0003723 ... Q9Y6G3 32812867
    595979 6zs9:b (4.0) BS01 rna ? GO:0003723 ... Q8N983 32812867
    595980 6zs9:c (4.0) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 32812867
    595981 6zs9:d (4.0) BS01 rna ? GO:0003723 ... Q9BRJ2 32812867
    595982 6zs9:f (4.0) BS01 rna ? GO:0005515 ... Q96GC5 32812867
    595983 6zs9:f (4.0) BS02 rna ? GO:0005515 ... Q96GC5 32812867
    595984 6zs9:g (4.0) BS01 rna ? GO:0003735 ... Q13405 32812867
    595985 6zs9:i (4.0) BS01 rna ? GO:0003735 ... Q4U2R6 32812867
    595986 6zs9:j (4.0) BS01 rna ? GO:0003735 ... A8K7J6 32812867
    595987 6zs9:l (4.0) BS01 rna ? GO:0003723 ... Q6P161 32812867
    595988 6zs9:m (4.0) BS01 rna ? GO:0003735 ... Q7Z7F7 32812867
    595989 6zs9:o (4.0) BS01 rna ? GO:0003735 ... Q9BQC6 32812867
    595990 6zs9:o (4.0) BS02 MG ? GO:0003735 ... Q9BQC6 32812867
    595991 6zs9:q (4.0) BS01 rna ? GO:0005634 ... Q8TAE8 32812867
    595992 6zs9:r (4.0) BS01 rna ? GO:0003735 ... Q9NVS2 32812867
    595993 6zs9:s (4.0) BS01 rna ? GO:0003723 ... Q9NP92 32812867
    595994 6zs9:t3 (4.0) BS01 peptide ? GO:0003723 ... P52815 32812867
    595995 6zs9:t3 (4.0) BS02 peptide ? GO:0003723 ... P52815 32812867
    595996 6zsa:0 (4.0) BS01 rna ? GO:0003723 ... Q9BYC8 32812867
    595997 6zsa:0 (4.0) BS02 ZN ? GO:0003723 ... Q9BYC8 32812867
    595998 6zsa:1 (4.0) BS01 rna ? GO:0003735 ... O75394 32812867
    595999 6zsa:2 (4.0) BS01 rna ? GO:0003735 ... Q9BQ48 32812867
    596000 6zsa:3 (4.0) BS01 rna ? GO:0003735 ... Q9NZE8 32812867

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).