SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    597001 6zto:BP (3.0) BS02 rna ? GO:0002181 ... P0C018 32820062
    597002 6zto:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7K6 32820062
    597003 6zto:BQ (3.0) BS02 rna ? GO:0000027 ... P0A7K6 32820062
    597004 6zto:BR (3.0) BS01 rna ? GO:0000027 ... P0A7L3 32820062
    597005 6zto:BS (3.0) BS01 rna ? GO:0002181 ... P0AG48 32820062
    597006 6zto:BT (3.0) BS01 rna ? GO:0002181 ... P61175 32820062
    597007 6zto:BU (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820062
    597008 6zto:BV (3.0) BS01 rna ? GO:0000027 ... P60624 32820062
    597009 6zto:BW (3.0) BS01 rna ? GO:0000027 ... P68919 32820062
    597010 6zto:BW (3.0) BS02 rna ? GO:0000027 ... P68919 32820062
    597011 6zto:BX (3.0) BS01 rna ? GO:0000027 ... P0A7L8 32820062
    597012 6zto:BX (3.0) BS02 rna ? GO:0000027 ... P0A7L8 32820062
    597013 6zto:BY (3.0) BS01 rna ? GO:0000027 ... P0A7M2 32820062
    597014 6zto:BZ (3.0) BS01 rna ? GO:0000027 ... P0A7M6 32820062
    597015 6zto:CC (3.0) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    597016 6zto:CC (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    597017 6zto:CC (3.0) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    597018 6zto:CD (3.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597019 6zto:CD (3.0) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597020 6zto:CD (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597021 6zto:CD (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597022 6ztp:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 32820062
    597023 6ztp:AC (3.0) BS01 rna ? GO:0000028 ... P0A7V3 32820062
    597024 6ztp:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 32820062
    597025 6ztp:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 32820062
    597026 6ztp:AE (3.0) BS02 rna ? GO:0000028 ... P0A7W1 32820062
    597027 6ztp:AF (3.0) BS01 rna ? GO:0002181 ... P02358 32820062
    597028 6ztp:AG (3.0) BS01 rna ? GO:0003723 ... P02359 32820062
    597029 6ztp:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 32820062
    597030 6ztp:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 32820062
    597031 6ztp:AI (3.0) BS02 rna ? GO:0000049 ... P0A7X3 32820062
    597032 6ztp:AI (3.0) BS03 MG ? GO:0000049 ... P0A7X3 32820062
    597033 6ztp:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 32820062
    597034 6ztp:AJ (3.0) BS02 dna ? GO:0000049 ... P0A7R5 32820062
    597035 6ztp:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 32820062
    597036 6ztp:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 32820062
    597037 6ztp:AL (3.0) BS02 MG ? GO:0000049 ... P0A7S3 32820062
    597038 6ztp:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 32820062
    597039 6ztp:AM (3.0) BS02 rna ? GO:0000049 ... P0A7S9 32820062
    597040 6ztp:AM (3.0) BS03 MG ? GO:0000049 ... P0A7S9 32820062
    597041 6ztp:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 32820062
    597042 6ztp:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820062
    597043 6ztp:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820062
    597044 6ztp:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 32820062
    597045 6ztp:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 32820062
    597046 6ztp:AR (3.0) BS01 rna ? GO:0002181 ... P0A7T7 32820062
    597047 6ztp:AS (3.0) BS01 rna ? GO:0000028 ... P0A7U3 32820062
    597048 6ztp:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 32820062
    597049 6ztp:AU (3.0) BS01 rna ? GO:0000028 ... P68679 32820062
    597050 6ztp:B1 (3.0) BS01 rna ? GO:0000027 ... P0AG51 32820062
    597051 6ztp:B1 (3.0) BS02 rna ? GO:0000027 ... P0AG51 32820062
    597052 6ztp:B2 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 32820062
    597053 6ztp:B3 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 32820062
    597054 6ztp:B4 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 32820062
    597055 6ztp:B5 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820062
    597056 6ztp:B6 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820062
    597057 6ztp:B6 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 32820062
    597058 6ztp:B7 (3.0) BS01 rna ? GO:0002181 ... P0A7M9 32820062
    597059 6ztp:B7 (3.0) BS02 rna ? GO:0002181 ... P0A7M9 32820062
    597060 6ztp:B7 (3.0) BS03 ZN ? GO:0002181 ... P0A7M9 32820062
    597061 6ztp:BC (3.0) BS01 rna ? GO:0000027 ... P60422 32820062
    597062 6ztp:BC (3.0) BS02 MG ? GO:0000027 ... P60422 32820062
    597063 6ztp:BD (3.0) BS01 rna ? GO:0000027 ... P60438 32820062
    597064 6ztp:BE (3.0) BS01 rna ? GO:0001070 ... P60723 32820062
    597065 6ztp:BF (3.0) BS01 rna ? GO:0000027 ... P62399 32820062
    597066 6ztp:BF (3.0) BS02 rna ? GO:0000027 ... P62399 32820062
    597067 6ztp:BF (3.0) BS03 rna ? GO:0000027 ... P62399 32820062
    597068 6ztp:BG (3.0) BS01 rna ? GO:0000027 ... P0AG55 32820062
    597069 6ztp:BH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 32820062
    597070 6ztp:BK (3.0) BS01 rna ? GO:0002181 ... P0AA10 32820062
    597071 6ztp:BL (3.0) BS01 rna ? GO:0002181 ... P0ADY3 32820062
    597072 6ztp:BL (3.0) BS02 rna ? GO:0002181 ... P0ADY3 32820062
    597073 6ztp:BM (3.0) BS01 rna ? GO:0002181 ... P02413 32820062
    597074 6ztp:BN (3.0) BS01 rna ? GO:0000027 ... P0ADY7 32820062
    597075 6ztp:BN (3.0) BS02 rna ? GO:0000027 ... P0ADY7 32820062
    597076 6ztp:BO (3.0) BS01 rna ? GO:0000027 ... P0AG44 32820062
    597077 6ztp:BP (3.0) BS01 rna ? GO:0002181 ... P0C018 32820062
    597078 6ztp:BP (3.0) BS02 rna ? GO:0002181 ... P0C018 32820062
    597079 6ztp:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7K6 32820062
    597080 6ztp:BQ (3.0) BS02 rna ? GO:0000027 ... P0A7K6 32820062
    597081 6ztp:BR (3.0) BS01 rna ? GO:0000027 ... P0A7L3 32820062
    597082 6ztp:BS (3.0) BS01 rna ? GO:0002181 ... P0AG48 32820062
    597083 6ztp:BT (3.0) BS01 rna ? GO:0002181 ... P61175 32820062
    597084 6ztp:BU (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820062
    597085 6ztp:BV (3.0) BS01 rna ? GO:0000027 ... P60624 32820062
    597086 6ztp:BW (3.0) BS01 rna ? GO:0000027 ... P68919 32820062
    597087 6ztp:BW (3.0) BS02 rna ? GO:0000027 ... P68919 32820062
    597088 6ztp:BX (3.0) BS01 rna ? GO:0000027 ... P0A7L8 32820062
    597089 6ztp:BX (3.0) BS02 rna ? GO:0000027 ... P0A7L8 32820062
    597090 6ztp:BY (3.0) BS01 rna ? GO:0000027 ... P0A7M2 32820062
    597091 6ztp:BZ (3.0) BS01 rna ? GO:0000027 ... P0A7M6 32820062
    597092 6ztp:CC (3.0) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    597093 6ztp:CC (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    597094 6ztp:CC (3.0) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    597095 6ztp:CD (3.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597096 6ztp:CD (3.0) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597097 6ztp:CD (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597098 6ztp:CD (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    597099 6ztq:B (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 33067417
    597100 6ztq:B (3.0) BS02 HQH 7.1.1.2 GO:0003954 ... Q9DC70 33067417
    597101 6ztq:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 33067417
    597102 6ztq:D (3.0) BS02 HQH 7.1.1.2 GO:0003954 ... Q91WD5 33067417
    597103 6ztq:E (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 33067417
    597104 6ztq:F (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    597105 6ztq:F (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    597106 6ztq:G (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    597107 6ztq:G (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    597108 6ztq:G (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    597109 6ztq:I (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    597110 6ztq:I (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    597111 6ztq:O (3.0) BS01 ATP ? GO:0005739 ... Q99LC3 33067417
    597112 6ztq:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 33067417
    597113 6ztq:R (3.0) BS01 ZN ? GO:0001822 ... P52503 33067417
    597114 6ztq:U (3.0) BS01 EHZ ? GO:0005654 ... Q9CR21 33067417
    597115 6ztq:W (3.0) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33067417
    597116 6ztq:n (3.0) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33067417
    597117 6ztr:I (2.1) BS01 CA ? GO:0005509 ... P22223 33879555
    597118 6ztr:I (2.1) BS02 CA ? GO:0005509 ... P22223 33879555
    597119 6ztr:I (2.1) BS03 CA ? GO:0005509 ... P22223 33879555
    597120 6ztr:J (2.1) BS01 CA ? GO:0005509 ... P22223 33879555
    597121 6ztr:J (2.1) BS02 CA ? GO:0005509 ... P22223 33879555
    597122 6ztr:J (2.1) BS03 CA ? GO:0005509 ... P22223 33879555
    597123 6ztu:A (1.69) BS01 0RE ? GO:0016740 ... A0A090KS30 33937777
    597124 6ztv:A (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597125 6ztv:B (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597126 6ztv:C (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597127 6ztv:D (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597128 6ztw:A (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597129 6ztw:B (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597130 6ztw:C (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597131 6ztw:D (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597132 6ztw:E (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597133 6ztw:F (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597134 6ztw:G (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597135 6ztw:H (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597136 6ztx:A (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597137 6ztx:B (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597138 6ztx:C (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597139 6ztx:D (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    597140 6zu1:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 32820062
    597141 6zu1:AC (3.0) BS01 rna ? GO:0000028 ... P0A7V3 32820062
    597142 6zu1:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 32820062
    597143 6zu1:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 32820062
    597144 6zu1:AE (3.0) BS02 rna ? GO:0000028 ... P0A7W1 32820062
    597145 6zu1:AF (3.0) BS01 rna ? GO:0002181 ... P02358 32820062
    597146 6zu1:AG (3.0) BS01 rna ? GO:0003723 ... P02359 32820062
    597147 6zu1:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 32820062
    597148 6zu1:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 32820062
    597149 6zu1:AI (3.0) BS02 rna ? GO:0000049 ... P0A7X3 32820062
    597150 6zu1:AI (3.0) BS03 MG ? GO:0000049 ... P0A7X3 32820062
    597151 6zu1:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 32820062
    597152 6zu1:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 32820062
    597153 6zu1:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 32820062
    597154 6zu1:AL (3.0) BS02 MG ? GO:0000049 ... P0A7S3 32820062
    597155 6zu1:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 32820062
    597156 6zu1:AM (3.0) BS02 rna ? GO:0000049 ... P0A7S9 32820062
    597157 6zu1:AM (3.0) BS03 MG ? GO:0000049 ... P0A7S9 32820062
    597158 6zu1:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 32820062
    597159 6zu1:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820062
    597160 6zu1:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820062
    597161 6zu1:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 32820062
    597162 6zu1:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 32820062
    597163 6zu1:AR (3.0) BS01 rna ? GO:0002181 ... P0A7T7 32820062
    597164 6zu1:AS (3.0) BS01 rna ? GO:0000028 ... P0A7U3 32820062
    597165 6zu1:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 32820062
    597166 6zu1:AU (3.0) BS01 rna ? GO:0000028 ... P68679 32820062
    597167 6zu1:B1 (3.0) BS01 rna ? GO:0000027 ... P0AG51 32820062
    597168 6zu1:B1 (3.0) BS02 rna ? GO:0000027 ... P0AG51 32820062
    597169 6zu1:B2 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 32820062
    597170 6zu1:B3 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 32820062
    597171 6zu1:B4 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 32820062
    597172 6zu1:B5 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820062
    597173 6zu1:B6 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820062
    597174 6zu1:B6 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 32820062
    597175 6zu1:B7 (3.0) BS01 rna ? GO:0002181 ... P0A7M9 32820062
    597176 6zu1:B7 (3.0) BS02 rna ? GO:0002181 ... P0A7M9 32820062
    597177 6zu1:B7 (3.0) BS03 ZN ? GO:0002181 ... P0A7M9 32820062
    597178 6zu1:BC (3.0) BS01 rna ? GO:0000027 ... P60422 32820062
    597179 6zu1:BC (3.0) BS02 MG ? GO:0000027 ... P60422 32820062
    597180 6zu1:BD (3.0) BS01 rna ? GO:0000027 ... P60438 32820062
    597181 6zu1:BE (3.0) BS01 rna ? GO:0001070 ... P60723 32820062
    597182 6zu1:BF (3.0) BS01 rna ? GO:0000027 ... P62399 32820062
    597183 6zu1:BF (3.0) BS02 rna ? GO:0000027 ... P62399 32820062
    597184 6zu1:BF (3.0) BS03 rna ? GO:0000027 ... P62399 32820062
    597185 6zu1:BG (3.0) BS01 rna ? GO:0000027 ... P0AG55 32820062
    597186 6zu1:BH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 32820062
    597187 6zu1:BK (3.0) BS01 rna ? GO:0002181 ... P0AA10 32820062
    597188 6zu1:BL (3.0) BS01 rna ? GO:0002181 ... P0ADY3 32820062
    597189 6zu1:BL (3.0) BS02 rna ? GO:0002181 ... P0ADY3 32820062
    597190 6zu1:BM (3.0) BS01 rna ? GO:0002181 ... P02413 32820062
    597191 6zu1:BN (3.0) BS01 rna ? GO:0000027 ... P0ADY7 32820062
    597192 6zu1:BN (3.0) BS02 rna ? GO:0000027 ... P0ADY7 32820062
    597193 6zu1:BO (3.0) BS01 rna ? GO:0000027 ... P0AG44 32820062
    597194 6zu1:BP (3.0) BS01 rna ? GO:0002181 ... P0C018 32820062
    597195 6zu1:BP (3.0) BS02 rna ? GO:0002181 ... P0C018 32820062
    597196 6zu1:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7K6 32820062
    597197 6zu1:BQ (3.0) BS02 rna ? GO:0000027 ... P0A7K6 32820062
    597198 6zu1:BR (3.0) BS01 rna ? GO:0000027 ... P0A7L3 32820062
    597199 6zu1:BS (3.0) BS01 rna ? GO:0002181 ... P0AG48 32820062
    597200 6zu1:BT (3.0) BS01 rna ? GO:0002181 ... P61175 32820062

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).