SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    597401 6zuk:C (2.03) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597402 6zuk:C (2.03) BS02 ZN ? GO:0030246 ... A0A0S4TLR1 N/A
    597403 6zuk:D (2.03) BS01 ZN ? GO:0030246 ... A0A0S4TLR1 N/A
    597404 6zuk:D (2.03) BS02 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597405 6zuk:E (2.03) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597406 6zuk:E (2.03) BS02 ZN ? GO:0030246 ... A0A0S4TLR1 N/A
    597407 6zul:A (1.62) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597408 6zul:B (1.62) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597409 6zul:C (1.62) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597410 6zul:D (1.62) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597411 6zul:E (1.62) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597412 6zul:F (1.62) BS01 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597413 6zum:A (1.589) BS01 BDF ? GO:0030246 ... A0A0S4TLR1 N/A
    597414 6zum:A (1.589) BS02 BDF ? GO:0030246 ... A0A0S4TLR1 N/A
    597415 6zum:A (1.589) BS03 QQ7 ? GO:0030246 ... A0A0S4TLR1 N/A
    597416 6zun:H (1.793) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597417 6zun:H (1.793) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597418 6zun:H (1.793) BS03 QQ5 3.4.21.5 GO:0004252 ... P00734 33108181 MOAD: ic50=10nM
    597419 6zuo:A (3.1) BS01 rna ? GO:0000028 ... P08865 33908345
    597420 6zuo:B (3.1) BS01 rna ? GO:0002181 ... P61247 33908345
    597421 6zuo:C (3.1) BS01 rna ? GO:0002181 ... P15880 33908345
    597422 6zuo:D (3.1) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33908345
    597423 6zuo:E (3.1) BS01 rna ? GO:0002181 ... P62701 33908345
    597424 6zuo:F (3.1) BS01 rna ? GO:0000028 ... P46782 33908345
    597425 6zuo:G (3.1) BS01 rna ? GO:0000082 ... P62753 33908345
    597426 6zuo:H (3.1) BS01 rna ? GO:0001843 ... P62081 33908345
    597427 6zuo:I (3.1) BS01 rna ? GO:0000462 ... P62241 33908345
    597428 6zuo:J (3.1) BS01 rna ? GO:0002181 ... P46781 33908345
    597429 6zuo:K (3.1) BS01 rna ? GO:0002181 ... P46783 33908345
    597430 6zuo:L (3.1) BS01 rna ? GO:0002181 ... P62280 33908345
    597431 6zuo:M (3.1) BS01 rna ? GO:0002181 ... P25398 33908345
    597432 6zuo:N (3.1) BS01 rna ? GO:0002181 ... P62277 33908345
    597433 6zuo:O (3.1) BS01 rna ? GO:0000028 ... P62263 33908345
    597434 6zuo:P (3.1) BS01 rna ? GO:0000028 ... P62841 33908345
    597435 6zuo:Q (3.1) BS01 rna ? GO:0000462 ... P62249 33908345
    597436 6zuo:R (3.1) BS01 rna ? GO:0002181 ... P08708 33908345
    597437 6zuo:S (3.1) BS01 rna ? GO:0002181 ... P62269 33908345
    597438 6zuo:T (3.1) BS01 rna ? GO:0000028 ... P39019 33908345
    597439 6zuo:U (3.1) BS01 rna ? GO:0002181 ... P60866 33908345
    597440 6zuo:W (3.1) BS01 rna ? GO:0002181 ... P62244 33908345
    597441 6zuo:X (3.1) BS01 rna ? GO:0002181 ... P62266 33908345
    597442 6zuo:Y (3.1) BS01 rna ? GO:0002181 ... P62847 33908345
    597443 6zuo:Z (3.1) BS01 rna ? GO:0002181 ... P62851 33908345
    597444 6zuo:b (3.1) BS01 rna ? GO:0000028 ... P42677 33908345
    597445 6zuo:c (3.1) BS01 rna ? GO:0000028 ... P62857 33908345
    597446 6zuo:d (3.1) BS01 rna ? GO:0002181 ... P62273 33908345
    597447 6zuo:d (3.1) BS02 ZN ? GO:0002181 ... P62273 33908345
    597448 6zuo:e (3.1) BS01 rna ? GO:0003735 ... P62861 33908345
    597449 6zuo:f (3.1) BS01 rna ? GO:0002181 ... P62979 33908345
    597450 6zuo:f (3.1) BS02 ZN ? GO:0002181 ... P62979 33908345
    597451 6zuo:g (3.1) BS01 rna ? GO:0001891 ... P63244 33908345
    597452 6zuo:x (3.1) BS01 rna ? GO:0003676 ... Q9NRX1 33908345
    597453 6zuo:y (3.1) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 33908345
    597454 6zuo:y (3.1) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33908345
    597455 6zup:A (2.5) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597456 6zup:A (2.5) BS02 HFA 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597457 6zup:B (2.5) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597458 6zup:B (2.5) BS02 HFA 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597459 6zuq:A (1.94) BS01 ZN ? GO:0046872 ... A0A1P8YXI8 35793393
    597460 6zur:A (2.31) BS01 TYF 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597461 6zur:A (2.31) BS02 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597462 6zur:B (2.31) BS01 TYF 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597463 6zur:B (2.31) BS02 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597464 6zus:A (1.62) BS01 ZN ? GO:0046872 ... A0A1P8YXI8 35793393
    597465 6zut:A (1.15) BS01 CU 1.7.2.1 GO:0005507 ... P25006 34094452
    597466 6zut:A (1.15) BS02 CU 1.7.2.1 GO:0005507 ... P25006 34094452
    597467 6zut:A (1.15) BS03 NO 1.7.2.1 GO:0005507 ... P25006 34094452
    597468 6zuu:H (1.94) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597469 6zuu:H (1.94) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597470 6zuu:H (1.94) BS03 QQN 3.4.21.5 GO:0004252 ... P00734 33108181 MOAD: ic50=3900nM
    597471 6zuv:A (1.54) BS01 B1J 3.1.1.98 GO:0016787 ... Q6P988 33124429 MOAD: ic50=11.5uM
    597472 6zuw:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597473 6zuw:H (2.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597474 6zuw:H (2.0) BS03 QQK 3.4.21.5 GO:0004252 ... P00734 33108181 MOAD: ic50=0.4nM
    597475 6zux:H (1.94) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597476 6zux:H (1.94) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597477 6zux:H (1.94) BS03 QQE 3.4.21.5 GO:0004252 ... P00734 33108181 MOAD: ic50=4nM
    597478 6zv5:AAA (1.95) BS01 FUC ? GO:0030246 ... B3VS76 35323921
    597479 6zv5:BBB (1.95) BS01 FUC ? GO:0030246 ... B3VS76 35323921
    597480 6zv5:CCC (1.95) BS01 FUC ? GO:0030246 ... B3VS76 35323921
    597481 6zv5:DDD (1.95) BS01 FUC ? GO:0030246 ... B3VS76 35323921
    597482 6zv5:EEE (1.95) BS01 FUC ? GO:0030246 ... B3VS76 35323921
    597483 6zv5:FFF (1.95) BS01 FUC ? GO:0030246 ... B3VS76 35323921
    597484 6zv6:A (2.9) BS01 rna ? GO:0000028 ... P08865 33908345
    597485 6zv6:B (2.9) BS01 rna ? GO:0002181 ... P61247 33908345
    597486 6zv6:C (2.9) BS01 rna ? GO:0002181 ... P15880 33908345
    597487 6zv6:D (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33908345
    597488 6zv6:E (2.9) BS01 rna ? GO:0002181 ... P62701 33908345
    597489 6zv6:F (2.9) BS01 rna ? GO:0000028 ... P46782 33908345
    597490 6zv6:G (2.9) BS01 rna ? GO:0000082 ... P62753 33908345
    597491 6zv6:H (2.9) BS01 rna ? GO:0001843 ... P62081 33908345
    597492 6zv6:I (2.9) BS01 rna ? GO:0000462 ... P62241 33908345
    597493 6zv6:J (2.9) BS01 rna ? GO:0002181 ... P46781 33908345
    597494 6zv6:K (2.9) BS01 rna ? GO:0002181 ... P46783 33908345
    597495 6zv6:L (2.9) BS01 rna ? GO:0002181 ... P62280 33908345
    597496 6zv6:M (2.9) BS01 rna ? GO:0002181 ... P25398 33908345
    597497 6zv6:N (2.9) BS01 rna ? GO:0002181 ... P62277 33908345
    597498 6zv6:O (2.9) BS01 rna ? GO:0000028 ... P62263 33908345
    597499 6zv6:P (2.9) BS01 rna ? GO:0000028 ... P62841 33908345
    597500 6zv6:Q (2.9) BS01 rna ? GO:0000462 ... P62249 33908345
    597501 6zv6:R (2.9) BS01 rna ? GO:0002181 ... P08708 33908345
    597502 6zv6:S (2.9) BS01 rna ? GO:0002181 ... P62269 33908345
    597503 6zv6:T (2.9) BS01 rna ? GO:0000028 ... P39019 33908345
    597504 6zv6:U (2.9) BS01 rna ? GO:0002181 ... P60866 33908345
    597505 6zv6:W (2.9) BS01 rna ? GO:0002181 ... P62244 33908345
    597506 6zv6:X (2.9) BS01 rna ? GO:0002181 ... P62266 33908345
    597507 6zv6:Y (2.9) BS01 rna ? GO:0002181 ... P62847 33908345
    597508 6zv6:Z (2.9) BS01 rna ? GO:0002181 ... P62851 33908345
    597509 6zv6:a (2.9) BS01 rna ? GO:0002181 ... P62854 33908345
    597510 6zv6:a (2.9) BS02 ZN ? GO:0002181 ... P62854 33908345
    597511 6zv6:b (2.9) BS01 rna ? GO:0000028 ... P42677 33908345
    597512 6zv6:c (2.9) BS01 rna ? GO:0000028 ... P62857 33908345
    597513 6zv6:d (2.9) BS01 rna ? GO:0002181 ... P62273 33908345
    597514 6zv6:e (2.9) BS01 rna ? GO:0003735 ... P62861 33908345
    597515 6zv6:f (2.9) BS01 rna ? GO:0002181 ... P62979 33908345
    597516 6zv6:g (2.9) BS01 rna ? GO:0001891 ... P63244 33908345
    597517 6zv6:h (2.9) BS01 rna 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33908345
    597518 6zv6:h (2.9) BS02 ADP 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33908345
    597519 6zv6:h (2.9) BS03 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33908345
    597520 6zv7:H (1.94) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597521 6zv7:H (1.94) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597522 6zv7:H (1.94) BS03 QQW 3.4.21.5 GO:0004252 ... P00734 33108181 MOAD: ic50=6nM
    597523 6zv8:H (1.7) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597524 6zv8:H (1.7) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 33108181
    597525 6zv8:H (1.7) BS03 QQT 3.4.21.5 GO:0004252 ... P00734 33108181 MOAD: ic50=0.7nM
    BindingDB: IC50=1.20nM
    597526 6zv9:A (1.85) BS01 TB N/A N/A N/A 33203677
    597527 6zv9:B (1.85) BS01 TB N/A N/A N/A 33203677
    597528 6zvb:A (2.51) BS01 peptide ? GO:0000122 ... P31947 N/A
    597529 6zvb:A (2.51) BS02 MG ? GO:0000122 ... P31947 N/A
    597530 6zvc:A (2.51) BS01 peptide ? GO:0000122 ... P31947 N/A
    597531 6zvc:A (2.51) BS02 MG ? GO:0000122 ... P31947 N/A
    597532 6zvd:A (2.5) BS01 peptide ? GO:0000122 ... P31947 N/A
    597533 6zvd:A (2.5) BS02 MG ? GO:0000122 ... P31947 N/A
    597534 6zve:A (2.51) BS01 peptide ? GO:0000122 ... P31947 N/A
    597535 6zve:A (2.51) BS02 MG ? GO:0000122 ... P31947 N/A
    597536 6zvf:H (1.9) BS01 peptide N/A N/A N/A 33795750
    597537 6zvf:L (1.9) BS01 peptide N/A N/A N/A 33795750
    597538 6zvg:A (2.59) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597539 6zvg:A (2.59) BS02 3IL 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597540 6zvg:B (2.59) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597541 6zvg:C (2.59) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597542 6zvg:C (2.59) BS02 3IL 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597543 6zvg:D (2.59) BS01 3IL 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597544 6zvg:D (2.59) BS02 PLP 2.6.1.- GO:0003824 ... C7E5X4 34204354
    597545 6zvh:A (2.9) BS01 rna ? GO:0003735 ... P08865 32744497
    597546 6zvh:B (2.9) BS01 rna ? GO:0002181 ... P61247 32744497
    597547 6zvh:C (2.9) BS01 rna ? GO:0003723 ... P15880 32744497
    597548 6zvh:D (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32744497
    597549 6zvh:E (2.9) BS01 rna ? GO:0002181 ... P62701 32744497
    597550 6zvh:F (2.9) BS01 rna ? GO:0000028 ... P46782 32744497
    597551 6zvh:F (2.9) BS02 rna ? GO:0000028 ... P46782 32744497
    597552 6zvh:G (2.9) BS01 rna ? GO:0000082 ... P62753 32744497
    597553 6zvh:H (2.9) BS01 rna ? GO:0001843 ... P62081 32744497
    597554 6zvh:I (2.9) BS01 rna ? GO:0000462 ... P62241 32744497
    597555 6zvh:J (2.9) BS01 rna ? GO:0002181 ... P46781 32744497
    597556 6zvh:K (2.9) BS01 rna ? N/A P46783 32744497
    597557 6zvh:L (2.9) BS01 rna ? GO:0002181 ... P62280 32744497
    597558 6zvh:M (2.9) BS01 rna ? GO:0002181 ... P25398 32744497
    597559 6zvh:N (2.9) BS01 rna ? GO:0002181 ... P62277 32744497
    597560 6zvh:O (2.9) BS01 rna ? GO:0000028 ... P62263 32744497
    597561 6zvh:P (2.9) BS01 rna ? GO:0003723 ... P62841 32744497
    597562 6zvh:Q (2.9) BS01 rna ? GO:0000462 ... P62249 32744497
    597563 6zvh:R (2.9) BS01 rna ? GO:0002181 ... P08708 32744497
    597564 6zvh:S (2.9) BS01 rna ? GO:0002181 ... P62269 32744497
    597565 6zvh:T (2.9) BS01 rna ? GO:0000028 ... P39019 32744497
    597566 6zvh:U (2.9) BS01 rna ? GO:0003723 ... P60866 32744497
    597567 6zvh:W (2.9) BS01 rna ? GO:0002181 ... P62244 32744497
    597568 6zvh:X (2.9) BS01 rna ? GO:0002181 ... P62266 32744497
    597569 6zvh:Y (2.9) BS01 rna ? GO:0002181 ... P62847 32744497
    597570 6zvh:Z (2.9) BS01 rna ? N/A P62851 32744497
    597571 6zvh:a (2.9) BS01 rna ? GO:0003735 ... P62854 32744497
    597572 6zvh:a (2.9) BS02 ZN ? GO:0003735 ... P62854 32744497
    597573 6zvh:b (2.9) BS01 rna ? GO:0000028 ... P42677 32744497
    597574 6zvh:c (2.9) BS01 rna ? GO:0000028 ... P62857 32744497
    597575 6zvh:d (2.9) BS01 rna ? GO:0002181 ... P62273 32744497
    597576 6zvh:d (2.9) BS02 ZN ? GO:0002181 ... P62273 32744497
    597577 6zvh:e (2.9) BS01 rna ? GO:0003735 ... P62861 32744497
    597578 6zvh:f (2.9) BS01 rna ? GO:0003735 ... P62979 32744497
    597579 6zvh:g (2.9) BS01 rna ? GO:0001891 ... P63244 32744497
    597580 6zvh:i (2.9) BS01 rna ? GO:0003677 ... O60869 32744497
    597581 6zvh:y (2.9) BS01 rna ? GO:0003677 ... Q9NX58 32744497
    597582 6zvi:A (3.0) BS01 rna ? GO:0000054 ... P0CX55 32744497
    597583 6zvi:B (3.0) BS01 rna ? GO:0000028 ... P07280 32744497
    597584 6zvi:C (3.0) BS01 rna ? GO:0003723 ... P38701 32744497
    597585 6zvi:E (3.0) BS01 rna ? GO:0002181 ... P0C0W1 32744497
    597586 6zvi:H (3.0) BS01 rna ? GO:0000462 ... P0CX29 32744497
    597587 6zvi:I (3.0) BS01 rna ? GO:0000462 ... P0CX31 32744497
    597588 6zvi:J (3.0) BS01 rna ? N/A Q3E792 32744497
    597589 6zvi:K (3.0) BS01 rna ? GO:0003735 ... P39939 32744497
    597590 6zvi:L (3.0) BS01 rna ? GO:0000028 ... P35997 32744497
    597591 6zvi:L (3.0) BS02 ZN ? GO:0000028 ... P35997 32744497
    597592 6zvi:N (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 32744497
    597593 6zvi:N (3.0) BS02 rna ? GO:0000028 ... Q3E7X9 32744497
    597594 6zvi:O (3.0) BS01 rna ? GO:0002181 ... P41057 32744497
    597595 6zvi:O (3.0) BS02 ZN ? GO:0002181 ... P41057 32744497
    597596 6zvi:P (3.0) BS01 rna ? GO:0003735 ... P0CX33 32744497
    597597 6zvi:Q (3.0) BS01 rna ? GO:0003735 ... P05759 32744497
    597598 6zvi:R (3.0) BS01 rna ? GO:0001965 ... P38011 32744497
    597599 6zvi:T (3.0) BS01 rna ? GO:0003677 ... O14467 32744497
    597600 6zvi:T (3.0) BS02 rna ? GO:0003677 ... O14467 32744497

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).