SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    598001 6zxd:z (3.2) BS01 rna 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598002 6zxe:A (3.0) BS01 rna ? GO:0000028 ... P08865 33208940
    598003 6zxe:B (3.0) BS01 rna ? GO:0002181 ... P61247 33208940
    598004 6zxe:C (3.0) BS01 rna ? GO:0002181 ... P15880 33208940
    598005 6zxe:D (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33208940
    598006 6zxe:E (3.0) BS01 rna ? GO:0002181 ... P62701 33208940
    598007 6zxe:F (3.0) BS01 rna ? GO:0000028 ... P46782 33208940
    598008 6zxe:G (3.0) BS01 rna ? GO:0000082 ... P62753 33208940
    598009 6zxe:H (3.0) BS01 rna ? GO:0001843 ... P62081 33208940
    598010 6zxe:I (3.0) BS01 rna ? GO:0000462 ... P62241 33208940
    598011 6zxe:J (3.0) BS01 rna ? GO:0002181 ... P46781 33208940
    598012 6zxe:K (3.0) BS01 rna ? GO:0002181 ... P46783 33208940
    598013 6zxe:L (3.0) BS01 rna ? GO:0002181 ... P62280 33208940
    598014 6zxe:M (3.0) BS01 rna ? GO:0002181 ... P25398 33208940
    598015 6zxe:N (3.0) BS01 rna ? GO:0002181 ... P62277 33208940
    598016 6zxe:O (3.0) BS01 rna ? GO:0000028 ... P62263 33208940
    598017 6zxe:P (3.0) BS01 rna ? GO:0000028 ... P62841 33208940
    598018 6zxe:Q (3.0) BS01 rna ? GO:0000462 ... P62249 33208940
    598019 6zxe:R (3.0) BS01 rna ? GO:0002181 ... P08708 33208940
    598020 6zxe:S (3.0) BS01 rna ? GO:0002181 ... P62269 33208940
    598021 6zxe:T (3.0) BS01 rna ? GO:0000028 ... P39019 33208940
    598022 6zxe:U (3.0) BS01 rna ? GO:0002181 ... P60866 33208940
    598023 6zxe:W (3.0) BS01 rna ? GO:0002181 ... P62244 33208940
    598024 6zxe:X (3.0) BS01 rna ? GO:0002181 ... P62266 33208940
    598025 6zxe:Y (3.0) BS01 rna ? GO:0002181 ... P62847 33208940
    598026 6zxe:Z (3.0) BS01 rna ? GO:0002181 ... P62851 33208940
    598027 6zxe:b (3.0) BS01 rna ? GO:0000028 ... P42677 33208940
    598028 6zxe:c (3.0) BS01 rna ? GO:0000028 ... P62857 33208940
    598029 6zxe:d (3.0) BS01 rna ? GO:0002181 ... P62273 33208940
    598030 6zxe:e (3.0) BS01 rna ? GO:0003735 ... P62861 33208940
    598031 6zxe:f (3.0) BS01 rna ? GO:0002181 ... P62979 33208940
    598032 6zxe:g (3.0) BS01 rna ? GO:0001891 ... P63244 33208940
    598033 6zxe:k (3.0) BS01 rna ? GO:0003723 ... Q8N1G4 33208940
    598034 6zxe:x (3.0) BS01 rna ? GO:0003676 ... Q9NRX1 33208940
    598035 6zxe:y (3.0) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    598036 6zxe:y (3.0) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    598037 6zxe:z (3.0) BS01 rna 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598038 6zxf:A (3.7) BS01 rna ? GO:0000028 ... P08865 33208940
    598039 6zxf:B (3.7) BS01 rna ? GO:0002181 ... P61247 33208940
    598040 6zxf:C (3.7) BS01 rna ? GO:0002181 ... P15880 33208940
    598041 6zxf:D (3.7) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33208940
    598042 6zxf:E (3.7) BS01 rna ? GO:0002181 ... P62701 33208940
    598043 6zxf:F (3.7) BS01 rna ? GO:0000028 ... P46782 33208940
    598044 6zxf:G (3.7) BS01 rna ? GO:0000082 ... P62753 33208940
    598045 6zxf:H (3.7) BS01 rna ? GO:0001843 ... P62081 33208940
    598046 6zxf:I (3.7) BS01 rna ? GO:0000462 ... P62241 33208940
    598047 6zxf:J (3.7) BS01 rna ? GO:0002181 ... P46781 33208940
    598048 6zxf:K (3.7) BS01 rna ? GO:0002181 ... P46783 33208940
    598049 6zxf:L (3.7) BS01 rna ? GO:0002181 ... P62280 33208940
    598050 6zxf:M (3.7) BS01 rna ? GO:0002181 ... P25398 33208940
    598051 6zxf:N (3.7) BS01 rna ? GO:0002181 ... P62277 33208940
    598052 6zxf:O (3.7) BS01 rna ? GO:0000028 ... P62263 33208940
    598053 6zxf:P (3.7) BS01 rna ? GO:0000028 ... P62841 33208940
    598054 6zxf:Q (3.7) BS01 rna ? GO:0000462 ... P62249 33208940
    598055 6zxf:R (3.7) BS01 rna ? GO:0002181 ... P08708 33208940
    598056 6zxf:S (3.7) BS01 rna ? GO:0002181 ... P62269 33208940
    598057 6zxf:T (3.7) BS01 rna ? GO:0000028 ... P39019 33208940
    598058 6zxf:U (3.7) BS01 rna ? GO:0002181 ... P60866 33208940
    598059 6zxf:W (3.7) BS01 rna ? GO:0002181 ... P62244 33208940
    598060 6zxf:X (3.7) BS01 rna ? GO:0002181 ... P62266 33208940
    598061 6zxf:Y (3.7) BS01 rna ? GO:0002181 ... P62847 33208940
    598062 6zxf:Z (3.7) BS01 rna ? GO:0002181 ... P62851 33208940
    598063 6zxf:b (3.7) BS01 rna ? GO:0000028 ... P42677 33208940
    598064 6zxf:c (3.7) BS01 rna ? GO:0000028 ... P62857 33208940
    598065 6zxf:d (3.7) BS01 rna ? GO:0002181 ... P62273 33208940
    598066 6zxf:d (3.7) BS02 ZN ? GO:0002181 ... P62273 33208940
    598067 6zxf:e (3.7) BS01 rna ? GO:0003735 ... P62861 33208940
    598068 6zxf:f (3.7) BS01 rna ? GO:0002181 ... P62979 33208940
    598069 6zxf:f (3.7) BS02 ZN ? GO:0002181 ... P62979 33208940
    598070 6zxf:g (3.7) BS01 rna ? GO:0001891 ... P63244 33208940
    598071 6zxf:j (3.7) BS01 rna ? GO:0003723 ... Q8N9N8 33208940
    598072 6zxf:k (3.7) BS01 rna ? GO:0003723 ... Q8N1G4 33208940
    598073 6zxf:y (3.7) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    598074 6zxf:y (3.7) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    598075 6zxf:z (3.7) BS01 rna 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598076 6zxf:z (3.7) BS02 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598077 6zxf:z (3.7) BS03 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598078 6zxf:z (3.7) BS04 ATP 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598079 6zxg:A (2.6) BS01 rna ? GO:0000028 ... P08865 33208940
    598080 6zxg:B (2.6) BS01 rna ? GO:0002181 ... P61247 33208940
    598081 6zxg:C (2.6) BS01 rna ? GO:0002181 ... P15880 33208940
    598082 6zxg:D (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33208940
    598083 6zxg:E (2.6) BS01 rna ? GO:0002181 ... P62701 33208940
    598084 6zxg:F (2.6) BS01 rna ? GO:0000028 ... P46782 33208940
    598085 6zxg:F (2.6) BS02 MG ? GO:0000028 ... P46782 33208940
    598086 6zxg:G (2.6) BS01 rna ? GO:0000082 ... P62753 33208940
    598087 6zxg:H (2.6) BS01 rna ? GO:0001843 ... P62081 33208940
    598088 6zxg:I (2.6) BS01 rna ? GO:0000462 ... P62241 33208940
    598089 6zxg:J (2.6) BS01 rna ? GO:0002181 ... P46781 33208940
    598090 6zxg:K (2.6) BS01 rna ? GO:0002181 ... P46783 33208940
    598091 6zxg:L (2.6) BS01 rna ? GO:0002181 ... P62280 33208940
    598092 6zxg:M (2.6) BS01 rna ? GO:0002181 ... P25398 33208940
    598093 6zxg:N (2.6) BS01 rna ? GO:0002181 ... P62277 33208940
    598094 6zxg:O (2.6) BS01 rna ? GO:0000028 ... P62263 33208940
    598095 6zxg:O (2.6) BS02 MG ? GO:0000028 ... P62263 33208940
    598096 6zxg:P (2.6) BS01 rna ? GO:0000028 ... P62841 33208940
    598097 6zxg:Q (2.6) BS01 rna ? GO:0000462 ... P62249 33208940
    598098 6zxg:R (2.6) BS01 rna ? GO:0002181 ... P08708 33208940
    598099 6zxg:S (2.6) BS01 rna ? GO:0002181 ... P62269 33208940
    598100 6zxg:T (2.6) BS01 rna ? GO:0000028 ... P39019 33208940
    598101 6zxg:U (2.6) BS01 rna ? GO:0002181 ... P60866 33208940
    598102 6zxg:W (2.6) BS01 rna ? GO:0002181 ... P62244 33208940
    598103 6zxg:X (2.6) BS01 rna ? GO:0002181 ... P62266 33208940
    598104 6zxg:Y (2.6) BS01 rna ? GO:0002181 ... P62847 33208940
    598105 6zxg:Z (2.6) BS01 rna ? GO:0002181 ... P62851 33208940
    598106 6zxg:b (2.6) BS01 rna ? GO:0000028 ... P42677 33208940
    598107 6zxg:c (2.6) BS01 rna ? GO:0000028 ... P62857 33208940
    598108 6zxg:d (2.6) BS01 rna ? GO:0002181 ... P62273 33208940
    598109 6zxg:d (2.6) BS02 ZN ? GO:0002181 ... P62273 33208940
    598110 6zxg:d (2.6) BS03 MG ? GO:0002181 ... P62273 33208940
    598111 6zxg:e (2.6) BS01 rna ? GO:0003735 ... P62861 33208940
    598112 6zxg:f (2.6) BS01 rna ? GO:0002181 ... P62979 33208940
    598113 6zxg:f (2.6) BS02 ZN ? GO:0002181 ... P62979 33208940
    598114 6zxg:g (2.6) BS01 rna ? GO:0001891 ... P63244 33208940
    598115 6zxg:h (2.6) BS01 rna ? GO:0002181 ... P62854 33208940
    598116 6zxg:h (2.6) BS02 ZN ? GO:0002181 ... P62854 33208940
    598117 6zxg:h (2.6) BS03 MG ? GO:0002181 ... P62854 33208940
    598118 6zxg:j (2.6) BS01 rna ? GO:0003723 ... Q8N9N8 33208940
    598119 6zxg:k (2.6) BS01 rna ? GO:0003723 ... Q8N1G4 33208940
    598120 6zxg:z (2.6) BS01 rna 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598121 6zxg:z (2.6) BS02 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598122 6zxg:z (2.6) BS03 ATP 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598123 6zxg:z (2.6) BS04 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598124 6zxh:A (2.7) BS01 rna ? GO:0000028 ... P08865 33208940
    598125 6zxh:B (2.7) BS01 rna ? GO:0002181 ... P61247 33208940
    598126 6zxh:C (2.7) BS01 rna ? GO:0002181 ... P15880 33208940
    598127 6zxh:D (2.7) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33208940
    598128 6zxh:E (2.7) BS01 rna ? GO:0002181 ... P62701 33208940
    598129 6zxh:F (2.7) BS01 rna ? GO:0000028 ... P46782 33208940
    598130 6zxh:F (2.7) BS02 MG ? GO:0000028 ... P46782 33208940
    598131 6zxh:G (2.7) BS01 rna ? GO:0000082 ... P62753 33208940
    598132 6zxh:H (2.7) BS01 rna ? GO:0001843 ... P62081 33208940
    598133 6zxh:I (2.7) BS01 rna ? GO:0000462 ... P62241 33208940
    598134 6zxh:J (2.7) BS01 rna ? GO:0002181 ... P46781 33208940
    598135 6zxh:K (2.7) BS01 rna ? GO:0002181 ... P46783 33208940
    598136 6zxh:L (2.7) BS01 rna ? GO:0002181 ... P62280 33208940
    598137 6zxh:M (2.7) BS01 rna ? GO:0002181 ... P25398 33208940
    598138 6zxh:N (2.7) BS01 rna ? GO:0002181 ... P62277 33208940
    598139 6zxh:O (2.7) BS01 rna ? GO:0000028 ... P62263 33208940
    598140 6zxh:O (2.7) BS02 MG ? GO:0000028 ... P62263 33208940
    598141 6zxh:P (2.7) BS01 rna ? GO:0000028 ... P62841 33208940
    598142 6zxh:Q (2.7) BS01 rna ? GO:0000462 ... P62249 33208940
    598143 6zxh:R (2.7) BS01 rna ? GO:0002181 ... P08708 33208940
    598144 6zxh:S (2.7) BS01 rna ? GO:0002181 ... P62269 33208940
    598145 6zxh:T (2.7) BS01 rna ? GO:0000028 ... P39019 33208940
    598146 6zxh:U (2.7) BS01 rna ? GO:0002181 ... P60866 33208940
    598147 6zxh:W (2.7) BS01 rna ? GO:0002181 ... P62244 33208940
    598148 6zxh:X (2.7) BS01 rna ? GO:0002181 ... P62266 33208940
    598149 6zxh:Y (2.7) BS01 rna ? GO:0002181 ... P62847 33208940
    598150 6zxh:Z (2.7) BS01 rna ? GO:0002181 ... P62851 33208940
    598151 6zxh:b (2.7) BS01 rna ? GO:0000028 ... P42677 33208940
    598152 6zxh:c (2.7) BS01 rna ? GO:0000028 ... P62857 33208940
    598153 6zxh:d (2.7) BS01 rna ? GO:0002181 ... P62273 33208940
    598154 6zxh:d (2.7) BS02 ZN ? GO:0002181 ... P62273 33208940
    598155 6zxh:d (2.7) BS03 MG ? GO:0002181 ... P62273 33208940
    598156 6zxh:e (2.7) BS01 rna ? GO:0003735 ... P62861 33208940
    598157 6zxh:f (2.7) BS01 rna ? GO:0002181 ... P62979 33208940
    598158 6zxh:f (2.7) BS02 ZN ? GO:0002181 ... P62979 33208940
    598159 6zxh:g (2.7) BS01 rna ? GO:0001891 ... P63244 33208940
    598160 6zxh:h (2.7) BS01 rna ? GO:0002181 ... P62854 33208940
    598161 6zxh:h (2.7) BS02 ZN ? GO:0002181 ... P62854 33208940
    598162 6zxh:j (2.7) BS01 rna ? GO:0003723 ... Q8N9N8 33208940
    598163 6zxh:z (2.7) BS01 rna 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598164 6zxh:z (2.7) BS02 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598165 6zxh:z (2.7) BS03 ATP 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598166 6zxh:z (2.7) BS04 MG 2.7.11.1
    3.6.3.-
    GO:0003824 ... Q9BRS2 33208940
    598167 6zxi:A (1.85) BS01 QS8 3.5.2.6 GO:0008658 ... Q6XEC0 33306385
    598168 6zxi:B (1.85) BS01 QS8 3.5.2.6 GO:0008658 ... Q6XEC0 33306385
    598169 6zxm:A (3.3) BS01 C2E ? GO:0000160 ... B0SUI1 33846343
    598170 6zxm:A (3.3) BS02 C2E ? GO:0000160 ... B0SUI1 33846343
    598171 6zxm:A (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    598172 6zxm:B (3.3) BS01 C2E ? GO:0000160 ... B0SUI1 33846343
    598173 6zxm:B (3.3) BS02 C2E ? GO:0000160 ... B0SUI1 33846343
    598174 6zxm:B (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    598175 6zxm:C (3.3) BS01 C2E ? GO:0000160 ... B0SUI1 33846343
    598176 6zxm:C (3.3) BS02 C2E ? GO:0000160 ... B0SUI1 33846343
    598177 6zxm:C (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    598178 6zxm:D (3.3) BS01 C2E ? GO:0000160 ... B0SUI1 33846343
    598179 6zxm:D (3.3) BS02 C2E ? GO:0000160 ... B0SUI1 33846343
    598180 6zxm:D (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    598181 6zxm:E (3.3) BS01 C2E ? GO:0000160 ... B0SUI1 33846343
    598182 6zxm:E (3.3) BS02 C2E ? GO:0000160 ... B0SUI1 33846343
    598183 6zxm:E (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    598184 6zxm:F (3.3) BS01 C2E ? GO:0000160 ... B0SUI1 33846343
    598185 6zxm:F (3.3) BS02 C2E ? GO:0000160 ... B0SUI1 33846343
    598186 6zxm:F (3.3) BS03 MG ? GO:0000160 ... B0SUI1 33846343
    598187 6zxo:A (2.6) BS01 D16 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: IC50=29000nM
    598188 6zxo:A (2.6) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598189 6zxo:A (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598190 6zxo:B (2.6) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598191 6zxo:B (2.6) BS02 D16 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: IC50=29000nM
    598192 6zxo:B (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598193 6zxo:C (2.6) BS01 D16 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: IC50=29000nM
    598194 6zxo:C (2.6) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598195 6zxo:C (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598196 6zxo:D (2.6) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598197 6zxo:D (2.6) BS02 D16 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: IC50=29000nM
    598198 6zxo:D (2.6) BS03 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM
    598199 6zxo:E (2.6) BS01 D16 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: IC50=29000nM
    598200 6zxo:E (2.6) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 33923290 BindingDB: Ki=14nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).