SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 10px:2O (2.45) BS01 rna N/A N/A Q5SHP8 N/A
    402 10px:2O (2.45) BS02 rna N/A N/A Q5SHP8 N/A
    403 10px:2P (2.45) BS01 rna N/A N/A Q5SHQ7 N/A
    404 10px:2Q (2.45) BS01 rna N/A N/A P60489 N/A
    405 10px:2Q (2.45) BS02 rna N/A N/A P60489 N/A
    406 10px:2Q (2.45) BS03 rna N/A N/A P60489 N/A
    407 10px:2Q (2.45) BS04 rna N/A N/A P60489 N/A
    408 10px:2Q (2.45) BS05 MG N/A N/A P60489 N/A
    409 10px:2R (2.45) BS01 rna N/A N/A Q9Z9H5 N/A
    410 10px:2S (2.45) BS01 rna N/A N/A Q5SHQ4 N/A
    411 10px:2S (2.45) BS02 rna N/A N/A Q5SHQ4 N/A
    412 10px:2T (2.45) BS01 rna N/A N/A P60490 N/A
    413 10px:2T (2.45) BS02 rna N/A N/A P60490 N/A
    414 10px:2T (2.45) BS03 MG N/A N/A P60490 N/A
    415 10px:2U (2.45) BS01 rna N/A N/A P60491 N/A
    416 10px:2U (2.45) BS02 MG N/A N/A P60491 N/A
    417 10px:2V (2.45) BS01 rna N/A N/A P60492 N/A
    418 10px:2V (2.45) BS02 MG N/A N/A P60492 N/A
    419 10px:2W (2.45) BS01 rna N/A N/A Q5SHP3 N/A
    420 10px:2W (2.45) BS02 MG N/A N/A Q5SHP3 N/A
    421 10px:2X (2.45) BS01 rna N/A N/A Q5SHP0 N/A
    422 10px:2X (2.45) BS02 MG N/A N/A Q5SHP0 N/A
    423 10px:2Y (2.45) BS01 rna N/A N/A Q5SHP9 N/A
    424 10px:2Y (2.45) BS02 ZN N/A N/A Q5SHP9 N/A
    425 10px:2Z (2.45) BS01 rna N/A N/A Q5SHZ1 N/A
    426 10px:2Z (2.45) BS02 rna N/A N/A Q5SHZ1 N/A
    427 10px:2Z (2.45) BS03 MG N/A N/A Q5SHZ1 N/A
    428 10px:2b (2.45) BS01 rna N/A N/A P80371 N/A
    429 10px:2c (2.45) BS01 rna N/A N/A P80372 N/A
    430 10px:2d (2.45) BS01 rna N/A N/A P80373 N/A
    431 10px:2d (2.45) BS02 SF4 N/A N/A P80373 N/A
    432 10px:2e (2.45) BS01 rna N/A N/A Q5SHQ5 N/A
    433 10px:2e (2.45) BS02 MG N/A N/A Q5SHQ5 N/A
    434 10px:2f (2.45) BS01 rna N/A N/A Q5SLP8 N/A
    435 10px:2f (2.45) BS02 MG N/A N/A Q5SLP8 N/A
    436 10px:2g (2.45) BS01 rna N/A N/A P17291 N/A
    437 10px:2g (2.45) BS02 rna N/A N/A P17291 N/A
    438 10px:2h (2.45) BS01 rna N/A N/A P0DOY9 N/A
    439 10px:2i (2.45) BS01 rna N/A N/A P80374 N/A
    440 10px:2i (2.45) BS02 rna N/A N/A P80374 N/A
    441 10px:2j (2.45) BS01 rna N/A N/A Q5SHN7 N/A
    442 10px:2k (2.45) BS01 rna N/A N/A P80376 N/A
    443 10px:2k (2.45) BS02 rna N/A N/A P80376 N/A
    444 10px:2k (2.45) BS03 MG N/A N/A P80376 N/A
    445 10px:2l (2.45) BS01 rna N/A N/A Q5SHN3 N/A
    446 10px:2l (2.45) BS02 MG N/A N/A Q5SHN3 N/A
    447 10px:2l (2.45) BS03 MG N/A N/A Q5SHN3 N/A
    448 10px:2l (2.45) BS04 MG N/A N/A Q5SHN3 N/A
    449 10px:2m (2.45) BS01 rna N/A N/A P80377 N/A
    450 10px:2m (2.45) BS02 rna N/A N/A P80377 N/A
    451 10px:2m (2.45) BS03 rna N/A N/A P80377 N/A
    452 10px:2n (2.45) BS01 rna N/A N/A P0DOY6 N/A
    453 10px:2n (2.45) BS02 ZN N/A N/A P0DOY6 N/A
    454 10px:2o (2.45) BS01 rna N/A N/A Q5SJ76 N/A
    455 10px:2o (2.45) BS02 rna N/A N/A Q5SJ76 N/A
    456 10px:2p (2.45) BS01 rna N/A N/A Q5SJH3 N/A
    457 10px:2q (2.45) BS01 rna N/A N/A P0DOY7 N/A
    458 10px:2q (2.45) BS02 MG N/A N/A P0DOY7 N/A
    459 10px:2r (2.45) BS01 rna N/A N/A Q5SLQ0 N/A
    460 10px:2r (2.45) BS02 MG N/A N/A Q5SLQ0 N/A
    461 10px:2s (2.45) BS01 rna N/A N/A Q5SHP2 N/A
    462 10px:2t (2.45) BS01 rna N/A N/A P80380 N/A
    463 10qg:A (1.549) BS01 DAN N/A N/A N/A 41676663
    464 10qg:A (1.549) BS02 DAN N/A N/A N/A 41676663
    465 10qh:A (1.56) BS01 SLB N/A N/A N/A 41676663
    466 10qi:A (1.81) BS01 SIA N/A N/A N/A 41676663
    467 10qq:A (2.13) BS01 ADP N/A N/A P55072 41793187
    468 10qq:A (2.13) BS02 ADP N/A N/A P55072 41793187
    469 10qq:B (2.13) BS01 ADP N/A N/A P55072 41793187
    470 10qq:B (2.13) BS02 ADP N/A N/A P55072 41793187
    471 10qq:C (2.13) BS01 ADP N/A N/A P55072 41793187
    472 10qq:C (2.13) BS02 ADP N/A N/A P55072 41793187
    473 10qq:D (2.13) BS01 ADP N/A N/A P55072 41793187
    474 10qq:D (2.13) BS02 ADP N/A N/A P55072 41793187
    475 10qq:E (2.13) BS01 ADP N/A N/A P55072 41793187
    476 10qq:E (2.13) BS02 ADP N/A N/A P55072 41793187
    477 10qq:F (2.13) BS01 ADP N/A N/A P55072 41793187
    478 10qq:F (2.13) BS02 ADP N/A N/A P55072 41793187
    479 10qq:G (2.13) BS01 ADP N/A N/A P55072 41793187
    480 10qq:G (2.13) BS02 ADP N/A N/A P55072 41793187
    481 10qq:H (2.13) BS01 ADP N/A N/A P55072 41793187
    482 10qq:H (2.13) BS02 ADP N/A N/A P55072 41793187
    483 10qq:I (2.13) BS01 ADP N/A N/A P55072 41793187
    484 10qq:I (2.13) BS02 ADP N/A N/A P55072 41793187
    485 10qq:J (2.13) BS01 ADP N/A N/A P55072 41793187
    486 10qq:J (2.13) BS02 ADP N/A N/A P55072 41793187
    487 10qq:K (2.13) BS01 ADP N/A N/A P55072 41793187
    488 10qq:K (2.13) BS02 ADP N/A N/A P55072 41793187
    489 10qq:L (2.13) BS01 ADP N/A N/A P55072 41793187
    490 10qq:L (2.13) BS02 ADP N/A N/A P55072 41793187
    491 10qr:A (2.3) BS01 ADP N/A N/A P55072 41793187
    492 10qr:A (2.3) BS02 ADP N/A N/A P55072 41793187
    493 10qr:B (2.3) BS01 ADP N/A N/A P55072 41793187
    494 10qr:B (2.3) BS02 ADP N/A N/A P55072 41793187
    495 10qr:C (2.3) BS01 ADP N/A N/A P55072 41793187
    496 10qr:C (2.3) BS02 ADP N/A N/A P55072 41793187
    497 10qr:D (2.3) BS01 ADP N/A N/A P55072 41793187
    498 10qr:D (2.3) BS02 ADP N/A N/A P55072 41793187
    499 10qr:E (2.3) BS01 ADP N/A N/A P55072 41793187
    500 10qr:E (2.3) BS02 ADP N/A N/A P55072 41793187
    501 10qr:F (2.3) BS01 ADP N/A N/A P55072 41793187
    502 10qr:F (2.3) BS02 ADP N/A N/A P55072 41793187
    503 10qs:A (1.733) BS01 A1C7M N/A N/A P03952 N/A
    504 10sl:A (2.72) BS01 H1N N/A N/A Q4E2L0 N/A
    505 10sl:B (2.72) BS01 H1N N/A N/A Q4E2L0 N/A
    506 10sr:A (3.02) BS01 5GP N/A N/A N/A N/A
    507 10sr:B (3.02) BS01 5GP N/A N/A N/A N/A
    508 10sr:C (3.02) BS01 5GP N/A N/A N/A N/A
    509 10sr:D (3.02) BS01 5GP N/A N/A N/A N/A
    510 10sr:E (3.02) BS01 5GP N/A N/A N/A N/A
    511 10sr:F (3.02) BS01 5GP N/A N/A N/A N/A
    512 10sr:G (3.02) BS01 5GP N/A N/A N/A N/A
    513 10sr:H (3.02) BS01 5GP N/A N/A N/A N/A
    514 10sw:A (2.96) BS01 GDP N/A N/A N/A N/A
    515 10sw:A (2.96) BS02 GDP N/A N/A N/A N/A
    516 10sw:B (2.96) BS01 GDP N/A N/A N/A N/A
    517 10sw:C (2.96) BS01 GDP N/A N/A N/A N/A
    518 10sw:D (2.96) BS01 GDP N/A N/A N/A N/A
    519 10sw:E (2.96) BS01 GDP N/A N/A N/A N/A
    520 10sw:F (2.96) BS01 GDP N/A N/A N/A N/A
    521 10sw:F (2.96) BS02 GDP N/A N/A N/A N/A
    522 10sw:G (2.96) BS01 GDP N/A N/A N/A N/A
    523 10sw:H (2.96) BS01 GDP N/A N/A N/A N/A
    524 10tu:A (3.2) BS01 TAS N/A N/A N/A N/A
    525 10tu:B (3.2) BS01 TAS N/A N/A N/A N/A
    526 10uh:A (1.85) BS01 COA N/A N/A Q8YDF2 N/A
    527 10uh:B (1.85) BS01 COA N/A N/A Q8YDF2 N/A
    528 10uh:C (1.85) BS01 COA N/A N/A Q8YDF2 N/A
    529 10xz:A (2.6) BS01 dna N/A N/A Q71DI3 N/A
    530 10xz:A (2.6) BS02 dna N/A N/A Q71DI3 N/A
    531 10xz:B (2.6) BS01 dna N/A N/A P62805 N/A
    532 10xz:B (2.6) BS02 dna N/A N/A P62805 N/A
    533 10xz:C (2.6) BS01 dna N/A N/A P0C0S8 N/A
    534 10xz:C (2.6) BS02 dna N/A N/A P0C0S8 N/A
    535 10xz:D (2.6) BS01 dna N/A N/A P62807 N/A
    536 10xz:D (2.6) BS02 dna N/A N/A P62807 N/A
    537 10xz:E (2.6) BS01 dna N/A N/A Q71DI3 N/A
    538 10xz:E (2.6) BS02 dna N/A N/A Q71DI3 N/A
    539 10xz:F (2.6) BS01 dna N/A N/A P62805 N/A
    540 10xz:F (2.6) BS02 dna N/A N/A P62805 N/A
    541 10xz:G (2.6) BS01 dna N/A N/A P0C0S8 N/A
    542 10xz:G (2.6) BS02 dna N/A N/A P0C0S8 N/A
    543 10xz:H (2.6) BS01 dna N/A N/A P62807 N/A
    544 10xz:H (2.6) BS02 dna N/A N/A P62807 N/A
    545 10ya:A (2.7) BS01 dna N/A N/A Q71DI3 N/A
    546 10ya:A (2.7) BS02 dna N/A N/A Q71DI3 N/A
    547 10ya:B (2.7) BS01 dna N/A N/A P62805 N/A
    548 10ya:B (2.7) BS02 dna N/A N/A P62805 N/A
    549 10ya:C (2.7) BS01 dna N/A N/A P0C0S8 N/A
    550 10ya:C (2.7) BS02 dna N/A N/A P0C0S8 N/A
    551 10ya:D (2.7) BS01 dna N/A N/A P62807 N/A
    552 10ya:D (2.7) BS02 dna N/A N/A P62807 N/A
    553 10ya:E (2.7) BS01 dna N/A N/A Q71DI3 N/A
    554 10ya:E (2.7) BS02 dna N/A N/A Q71DI3 N/A
    555 10ya:E (2.7) BS03 dna N/A N/A Q71DI3 N/A
    556 10ya:F (2.7) BS01 dna N/A N/A P62805 N/A
    557 10ya:F (2.7) BS02 dna N/A N/A P62805 N/A
    558 10ya:G (2.7) BS01 dna N/A N/A P0C0S8 N/A
    559 10ya:G (2.7) BS02 dna N/A N/A P0C0S8 N/A
    560 10ya:H (2.7) BS01 dna N/A N/A P62807 N/A
    561 10ya:H (2.7) BS02 dna N/A N/A P62807 N/A
    562 10yb:A (2.8) BS01 dna N/A N/A Q71DI3 N/A
    563 10yb:A (2.8) BS02 dna N/A N/A Q71DI3 N/A
    564 10yb:B (2.8) BS01 dna N/A N/A P62805 N/A
    565 10yb:B (2.8) BS02 dna N/A N/A P62805 N/A
    566 10yb:C (2.8) BS01 dna N/A N/A P0C0S8 N/A
    567 10yb:C (2.8) BS02 dna N/A N/A P0C0S8 N/A
    568 10yb:D (2.8) BS01 dna N/A N/A P62807 N/A
    569 10yb:D (2.8) BS02 dna N/A N/A P62807 N/A
    570 10yb:E (2.8) BS01 dna N/A N/A Q71DI3 N/A
    571 10yb:E (2.8) BS02 dna N/A N/A Q71DI3 N/A
    572 10yb:E (2.8) BS03 dna N/A N/A Q71DI3 N/A
    573 10yb:F (2.8) BS01 dna N/A N/A P62805 N/A
    574 10yb:F (2.8) BS02 dna N/A N/A P62805 N/A
    575 10yb:G (2.8) BS01 dna N/A N/A P0C0S8 N/A
    576 10yb:G (2.8) BS02 dna N/A N/A P0C0S8 N/A
    577 10yb:H (2.8) BS01 dna N/A N/A P62807 N/A
    578 10yb:H (2.8) BS02 dna N/A N/A P62807 N/A
    579 10yc:A (2.7) BS01 dna N/A N/A Q71DI3 N/A
    580 10yc:A (2.7) BS02 dna N/A N/A Q71DI3 N/A
    581 10yc:B (2.7) BS01 dna N/A N/A P62805 N/A
    582 10yc:B (2.7) BS02 dna N/A N/A P62805 N/A
    583 10yc:C (2.7) BS01 dna N/A N/A P0C0S8 N/A
    584 10yc:C (2.7) BS02 dna N/A N/A P0C0S8 N/A
    585 10yc:D (2.7) BS01 dna N/A N/A P62807 N/A
    586 10yc:D (2.7) BS02 dna N/A N/A P62807 N/A
    587 10yc:E (2.7) BS01 dna N/A N/A Q71DI3 N/A
    588 10yc:E (2.7) BS02 dna N/A N/A Q71DI3 N/A
    589 10yc:F (2.7) BS01 dna N/A N/A P62805 N/A
    590 10yc:F (2.7) BS02 dna N/A N/A P62805 N/A
    591 10yc:G (2.7) BS01 dna N/A N/A P0C0S8 N/A
    592 10yc:G (2.7) BS02 dna N/A N/A P0C0S8 N/A
    593 10yc:H (2.7) BS01 dna N/A N/A P62807 N/A
    594 10yc:H (2.7) BS02 dna N/A N/A P62807 N/A
    595 10yc:H (2.7) BS03 dna N/A N/A P62807 N/A
    596 10yd:A (2.8) BS01 dna N/A N/A Q71DI3 N/A
    597 10yd:A (2.8) BS02 dna N/A N/A Q71DI3 N/A
    598 10yd:A (2.8) BS03 dna N/A N/A Q71DI3 N/A
    599 10yd:B (2.8) BS01 dna N/A N/A P62805 N/A
    600 10yd:B (2.8) BS02 dna N/A N/A P62805 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).