SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    600601 7a5j:o (3.1) BS01 rna ? GO:0003735 ... Q9BQC6 33243891
    600602 7a5j:q (3.1) BS01 rna ? GO:0005515 ... Q8TAE8 33243891
    600603 7a5j:r (3.1) BS01 rna ? GO:0003735 ... Q9NVS2 33243891
    600604 7a5j:s (3.1) BS01 rna ? GO:0003723 ... Q9NP92 33243891
    600605 7a5j:u (3.1) BS01 rna ? GO:0005515 ... Q96EH3 33243891
    600606 7a5k:03 (3.7) BS01 rna ? GO:0003723 ... Q9BYC8 33243891
    600607 7a5k:03 (3.7) BS02 ZN ? GO:0003723 ... Q9BYC8 33243891
    600608 7a5k:13 (3.7) BS01 rna ? GO:0003735 ... O75394 33243891
    600609 7a5k:23 (3.7) BS01 rna ? GO:0003735 ... Q9BQ48 33243891
    600610 7a5k:33 (3.7) BS01 rna ? GO:0003735 ... Q9NZE8 33243891
    600611 7a5k:43 (3.7) BS01 rna ? GO:0003735 ... Q9P0J6 33243891
    600612 7a5k:43 (3.7) BS02 ZN ? GO:0003735 ... Q9P0J6 33243891
    600613 7a5k:53 (3.7) BS01 rna ? GO:0003723 ... Q9BZE1 33243891
    600614 7a5k:63 (3.7) BS01 rna ? GO:0005515 ... Q96DV4 33243891
    600615 7a5k:63 (3.7) BS02 rna ? GO:0005515 ... Q96DV4 33243891
    600616 7a5k:93 (3.7) BS01 rna ? GO:0003723 ... Q8IXM3 33243891
    600617 7a5k:A (3.7) BS01 rna ? GO:0003723 ... Q9NQ50 33243891
    600618 7a5k:A (3.7) BS02 rna ? GO:0003723 ... Q9NQ50 33243891
    600619 7a5k:B6 (3.7) BS01 rna ? GO:0003735 ... Q9Y399 33243891
    600620 7a5k:B6 (3.7) BS02 ZN ? GO:0003735 ... Q9Y399 33243891
    600621 7a5k:C6 (3.7) BS01 rna ? GO:0003723 ... Q96EL2 33243891
    600622 7a5k:D (3.7) BS01 rna ? GO:0003723 ... Q9BYD2 33243891
    600623 7a5k:D3 (3.7) BS01 rna ? GO:0003723 ... Q5T653 33243891
    600624 7a5k:D6 (3.7) BS01 rna ? GO:0003723 ... P82675 33243891
    600625 7a5k:E3 (3.7) BS01 rna ? GO:0003723 ... P09001 33243891
    600626 7a5k:E6 (3.7) BS01 rna ? GO:0003735 ... P82932 33243891
    600627 7a5k:F3 (3.7) BS01 rna ? GO:0003723 ... Q9BYD3 33243891
    600628 7a5k:F6 (3.7) BS01 rna ? GO:0000028 ... Q9Y2R9 33243891
    600629 7a5k:F6 (3.7) BS02 rna ? GO:0000028 ... Q9Y2R9 33243891
    600630 7a5k:F6 (3.7) BS03 rna ? GO:0000028 ... Q9Y2R9 33243891
    600631 7a5k:G6 (3.7) BS01 rna ? GO:0003723 ... P82933 33243891
    600632 7a5k:H3 (3.7) BS01 rna ? GO:0003723 ... Q9BYD2 33243891
    600633 7a5k:H6 (3.7) BS01 rna ? GO:0005739 ... P82664 33243891
    600634 7a5k:I3 (3.7) BS01 rna ? GO:0003723 ... Q7Z7H8 33243891
    600635 7a5k:I3 (3.7) BS02 peptide ? GO:0003723 ... Q7Z7H8 33243891
    600636 7a5k:I6 (3.7) BS01 rna ? GO:0003723 ... P82912 33243891
    600637 7a5k:J3 (3.7) BS01 rna ? GO:0003723 ... Q9Y3B7 33243891
    600638 7a5k:J6 (3.7) BS01 rna ? GO:0003723 ... O15235 33243891
    600639 7a5k:K3 (3.7) BS01 rna ? GO:0003723 ... Q9BYD1 33243891
    600640 7a5k:K6 (3.7) BS01 rna ? GO:0003723 ... O60783 33243891
    600641 7a5k:L3 (3.7) BS01 rna ? GO:0003723 ... Q6P1L8 33243891
    600642 7a5k:L3 (3.7) BS02 rna ? GO:0003723 ... Q6P1L8 33243891
    600643 7a5k:L6 (3.7) BS01 rna ? GO:0003723 ... P82914 33243891
    600644 7a5k:M3 (3.7) BS01 rna ? GO:0003723 ... Q9P015 33243891
    600645 7a5k:M6 (3.7) BS01 rna ? GO:0003735 ... Q9Y3D3 33243891
    600646 7a5k:N3 (3.7) BS01 rna ? GO:0003735 ... Q9NX20 33243891
    600647 7a5k:N3 (3.7) BS02 peptide ? GO:0003735 ... Q9NX20 33243891
    600648 7a5k:N6 (3.7) BS01 rna ? GO:0003735 ... Q9Y2R5 33243891
    600649 7a5k:O3 (3.7) BS01 rna ? GO:0003735 ... Q9NRX2 33243891
    600650 7a5k:O6 (3.7) BS01 rna ? GO:0003735 ... Q9Y676 33243891
    600651 7a5k:P3 (3.7) BS01 rna ? GO:0003735 ... A8K9D2 33243891
    600652 7a5k:P6 (3.7) BS01 rna ? GO:0003735 ... Q9Y3D5 33243891
    600653 7a5k:P6 (3.7) BS02 ZN ? GO:0003735 ... Q9Y3D5 33243891
    600654 7a5k:Q3 (3.7) BS01 rna ? GO:0003735 ... P49406 33243891
    600655 7a5k:Q6 (3.7) BS01 rna ? GO:0003723 ... P82921 33243891
    600656 7a5k:R3 (3.7) BS01 rna ? GO:0003723 ... Q9BYC9 33243891
    600657 7a5k:S3 (3.7) BS01 rna ? GO:0003723 ... Q7Z2W9 33243891
    600658 7a5k:S6 (3.7) BS01 rna ? GO:0003723 ... Q9Y3D9 33243891
    600659 7a5k:T3 (3.7) BS01 rna ? GO:0003735 ... E7ESL0 33243891
    600660 7a5k:T6 (3.7) BS01 rna ? GO:0003735 ... P82663 33243891
    600661 7a5k:T6 (3.7) BS02 ZN ? GO:0003735 ... P82663 33243891
    600662 7a5k:U3 (3.7) BS01 rna ? GO:0001650 ... Q16540 33243891
    600663 7a5k:U6 (3.7) BS01 rna ? GO:0003723 ... Q9BYN8 33243891
    600664 7a5k:V3 (3.7) BS01 rna ? GO:0003723 ... Q96A35 33243891
    600665 7a5k:V6 (3.7) BS01 rna ? GO:0000049 ... Q92552 33243891
    600666 7a5k:W3 (3.7) BS01 rna ? GO:0003723 ... Q9P0M9 33243891
    600667 7a5k:X3 (3.7) BS01 rna ? GO:0003723 ... Q13084 33243891
    600668 7a5k:X3 (3.7) BS02 rna ? GO:0003723 ... Q13084 33243891
    600669 7a5k:X6 (3.7) BS01 rna ? GO:0003723 ... P51398 33243891
    600670 7a5k:X6 (3.7) BS02 GDP ? GO:0003723 ... P51398 33243891
    600671 7a5k:Y3 (3.7) BS01 rna ? GO:0003735 ... Q9HD33 33243891
    600672 7a5k:Z3 (3.7) BS01 rna ? GO:0003735 ... Q8TCC3 33243891
    600673 7a5k:Z6 (3.7) BS01 rna ? GO:0003735 ... Q9Y291 33243891
    600674 7a5k:a3 (3.7) BS01 rna ? GO:0003723 ... Q9Y6G3 33243891
    600675 7a5k:a6 (3.7) BS01 rna ? GO:0003735 ... P82930 33243891
    600676 7a5k:b3 (3.7) BS01 rna ? GO:0003735 ... Q8N983 33243891
    600677 7a5k:b6 (3.7) BS01 rna ? GO:0003723 ... P82673 33243891
    600678 7a5k:c3 (3.7) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 33243891
    600679 7a5k:c6 (3.7) BS01 rna ? GO:0001650 ... Q96BP2 33243891
    600680 7a5k:d6 (3.7) BS01 rna ? GO:0005515 ... Q9NWT8 33243891
    600681 7a5k:d6 (3.7) BS02 rna ? GO:0005515 ... Q9NWT8 33243891
    600682 7a5k:f3 (3.7) BS01 rna ? GO:0005515 ... Q96GC5 33243891
    600683 7a5k:f3 (3.7) BS02 rna ? GO:0005515 ... Q96GC5 33243891
    600684 7a5k:g3 (3.7) BS01 rna ? GO:0003735 ... Q13405 33243891
    600685 7a5k:i3 (3.7) BS01 rna ? GO:0003735 ... Q4U2R6 33243891
    600686 7a5k:j3 (3.7) BS01 rna ? GO:0003735 ... A8K7J6 33243891
    600687 7a5k:n (3.7) BS01 rna ? GO:0003723 ... Q9BYD6 33243891
    600688 7a5k:n (3.7) BS02 rna ? GO:0003723 ... Q9BYD6 33243891
    600689 7a5k:o3 (3.7) BS01 rna ? GO:0003735 ... Q9BQC6 33243891
    600690 7a5k:q3 (3.7) BS01 rna ? GO:0005515 ... Q8TAE8 33243891
    600691 7a5k:r1 (3.7) BS01 rna ? GO:0003723 ... Q96RP9 33243891
    600692 7a5k:r1 (3.7) BS02 rna ? GO:0003723 ... Q96RP9 33243891
    600693 7a5k:r1 (3.7) BS03 MG ? GO:0003723 ... Q96RP9 33243891
    600694 7a5k:r3 (3.7) BS01 rna ? GO:0003735 ... Q9NVS2 33243891
    600695 7a5k:s3 (3.7) BS01 rna ? GO:0003723 ... Q9NP92 33243891
    600696 7a5l:A (2.1) BS01 QZW 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 34143631
    600697 7a5n:A (2.3) BS01 R05 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 34143631
    600698 7a5n:B (2.3) BS01 R05 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 34143631
    600699 7a5o:A (2.95) BS01 CA ? N/A Q02817 33031746
    600700 7a5o:A (2.95) BS02 CA ? N/A Q02817 33031746
    600701 7a5o:A (2.95) BS03 CA ? N/A Q02817 33031746
    600702 7a5o:A (2.95) BS04 CA ? N/A Q02817 33031746
    600703 7a5o:A (2.95) BS05 CA ? N/A Q02817 33031746
    600704 7a5o:B (2.95) BS01 CA ? N/A Q02817 33031746
    600705 7a5o:B (2.95) BS02 CA ? N/A Q02817 33031746
    600706 7a5o:C (2.95) BS01 CA ? N/A Q02817 33031746
    600707 7a5o:C (2.95) BS02 CA ? N/A Q02817 33031746
    600708 7a5o:C (2.95) BS03 CA ? N/A Q02817 33031746
    600709 7a5o:D (2.95) BS01 CA ? N/A Q02817 33031746
    600710 7a5o:D (2.95) BS02 CA ? N/A Q02817 33031746
    600711 7a5o:D (2.95) BS03 CA ? N/A Q02817 33031746
    600712 7a5o:E (2.95) BS01 CA ? N/A Q02817 33031746
    600713 7a5o:E (2.95) BS02 CA ? N/A Q02817 33031746
    600714 7a5o:E (2.95) BS03 CA ? N/A Q02817 33031746
    600715 7a5o:E (2.95) BS04 CA ? N/A Q02817 33031746
    600716 7a5o:E (2.95) BS05 CA ? N/A Q02817 33031746
    600717 7a5o:F (2.95) BS01 CA ? N/A Q02817 33031746
    600718 7a5o:F (2.95) BS02 CA ? N/A Q02817 33031746
    600719 7a5o:G (2.95) BS01 CA ? N/A Q02817 33031746
    600720 7a5o:G (2.95) BS02 CA ? N/A Q02817 33031746
    600721 7a5o:G (2.95) BS03 CA ? N/A Q02817 33031746
    600722 7a5o:H (2.95) BS01 CA ? N/A Q02817 33031746
    600723 7a5o:H (2.95) BS02 CA ? N/A Q02817 33031746
    600724 7a5o:H (2.95) BS03 CA ? N/A Q02817 33031746
    600725 7a5o:I (2.95) BS01 CA ? N/A Q02817 33031746
    600726 7a5o:I (2.95) BS02 CA ? N/A Q02817 33031746
    600727 7a5o:J (2.95) BS01 CA ? N/A Q02817 33031746
    600728 7a5o:J (2.95) BS02 CA ? N/A Q02817 33031746
    600729 7a5p:E (5.0) BS01 rna ? GO:0000398 ... O60508 33007253
    600730 7a5p:P (5.0) BS01 rna ? GO:0000398 ... Q9NW64 33007253
    600731 7a5p:U (5.0) BS01 rna 3.6.4.13 GO:0000398 ... O60306 33007253
    600732 7a5p:X (5.0) BS01 rna ? GO:0000398 ... P08579 33007253
    600733 7a5p:a (5.0) BS01 rna ? GO:0000243 ... P62318 33007253
    600734 7a5p:b (5.0) BS01 rna ? GO:0000387 ... P14678 33007253
    600735 7a5p:e (5.0) BS01 rna ? GO:0000245 ... P62304 33007253
    600736 7a5p:g (5.0) BS01 rna ? GO:0000245 ... P62308 33007253
    600737 7a5p:h (5.0) BS01 rna ? GO:0000245 ... P62316 33007253
    600738 7a5p:j (5.0) BS01 rna ? GO:0000245 ... P62304 33007253
    600739 7a5p:k (5.0) BS01 rna ? GO:0000245 ... P62308 33007253
    600740 7a5p:l (5.0) BS01 rna ? GO:0000243 ... P62318 33007253
    600741 7a5p:m (5.0) BS01 rna ? GO:0000387 ... P14678 33007253
    600742 7a5p:n (5.0) BS01 rna ? GO:0000243 ... P62314 33007253
    600743 7a5p:p (5.0) BS01 rna ? GO:0005634 ... Q9NW82 33007253
    600744 7a5q:A (1.68) BS01 SLB ? GO:0030288 ... Q9KR64 33316271 MOAD: Kd=300nM
    600745 7a5q:B (1.68) BS01 SLB ? GO:0030288 ... Q9KR64 33316271 MOAD: Kd=300nM
    600746 7a5q:B (1.68) BS02 BGC ? GO:0030288 ... Q9KR64 33316271
    600747 7a5v:A (1.7) BS01 HSM ? GO:0004888 ... P28472 33087931
    600748 7a5x:A (1.94) BS01 R7H 3.2.1.18 GO:0004308 ... P62575 33150981
    600749 7a5x:A (1.94) BS02 CA 3.2.1.18 GO:0004308 ... P62575 33150981
    600750 7a5x:B (1.94) BS01 R7H 3.2.1.18 GO:0004308 ... P62575 33150981
    600751 7a5x:B (1.94) BS02 CA 3.2.1.18 GO:0004308 ... P62575 33150981
    600752 7a5y:A (2.29) BS01 FE 3.1.5.- N/A Q9Y3Z3 33988981
    600753 7a5y:A (2.29) BS02 MG 3.1.5.- N/A Q9Y3Z3 33988981
    600754 7a5y:A (2.29) BS03 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600755 7a5y:A (2.29) BS04 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600756 7a5y:A (2.29) BS05 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600757 7a5y:A (2.29) BS06 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600758 7a5y:A (2.29) BS07 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600759 7a5y:A (2.29) BS08 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600760 7a5y:B (2.29) BS01 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600761 7a5y:B (2.29) BS02 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600762 7a5y:B (2.29) BS03 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600763 7a5y:B (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    600764 7a5y:B (2.29) BS05 MG 3.1.5.- N/A Q9Y3Z3 33988981
    600765 7a5y:B (2.29) BS06 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600766 7a5y:B (2.29) BS07 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600767 7a5y:B (2.29) BS08 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600768 7a5y:C (2.29) BS01 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600769 7a5y:C (2.29) BS02 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600770 7a5y:C (2.29) BS03 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600771 7a5y:C (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    600772 7a5y:C (2.29) BS05 MG 3.1.5.- N/A Q9Y3Z3 33988981
    600773 7a5y:C (2.29) BS06 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600774 7a5y:C (2.29) BS07 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600775 7a5y:C (2.29) BS08 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600776 7a5y:D (2.29) BS01 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600777 7a5y:D (2.29) BS02 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600778 7a5y:D (2.29) BS03 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600779 7a5y:D (2.29) BS04 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600780 7a5y:D (2.29) BS05 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600781 7a5y:D (2.29) BS06 FE 3.1.5.- N/A Q9Y3Z3 33988981
    600782 7a5y:D (2.29) BS07 MG 3.1.5.- N/A Q9Y3Z3 33988981
    600783 7a5y:D (2.29) BS08 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600784 7a5y:E (2.29) BS01 FE 3.1.5.- N/A Q9Y3Z3 33988981
    600785 7a5y:E (2.29) BS02 MG 3.1.5.- N/A Q9Y3Z3 33988981
    600786 7a5y:E (2.29) BS03 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600787 7a5y:E (2.29) BS04 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600788 7a5y:E (2.29) BS05 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600789 7a5y:E (2.29) BS06 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600790 7a5y:E (2.29) BS07 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600791 7a5y:E (2.29) BS08 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600792 7a5y:F (2.29) BS01 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600793 7a5y:F (2.29) BS02 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600794 7a5y:F (2.29) BS03 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600795 7a5y:F (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    600796 7a5y:F (2.29) BS05 MG 3.1.5.- N/A Q9Y3Z3 33988981
    600797 7a5y:F (2.29) BS06 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600798 7a5y:F (2.29) BS07 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600799 7a5y:F (2.29) BS08 T8T 3.1.5.- N/A Q9Y3Z3 33988981
    600800 7a5y:G (2.29) BS01 T8T 3.1.5.- N/A Q9Y3Z3 33988981

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).