SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2997 2998 2999 3000 3001 3002 3003 3004 3005 3006 3007 3008 3009 3010 3011 3012 3013 3014 3015 3016 3017 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601201 7abg:N (7.8) BS01 rna ? GO:0000398 ... Q96NC0 33243851
    601202 7abg:N (7.8) BS02 rna ? GO:0000398 ... Q96NC0 33243851
    601203 7abg:P (7.8) BS01 rna ? GO:0000398 ... Q9NW64 33243851
    601204 7abg:P (7.8) BS02 rna ? GO:0000398 ... Q9NW64 33243851
    601205 7abg:Q (7.8) BS01 rna ? GO:0000398 ... P41223 33243851
    601206 7abg:W (7.8) BS01 rna ? GO:0000398 ... P09661 33243851
    601207 7abg:a (7.8) BS01 rna ? GO:0000245 ... P62316 33243851
    601208 7abg:b (7.8) BS01 rna ? GO:0000387 ... P62306 33243851
    601209 7abg:e (7.8) BS01 rna ? GO:0000243 ... P62318 33243851
    601210 7abg:f (7.8) BS01 rna ? GO:0000387 ... P14678 33243851
    601211 7abg:g (7.8) BS01 rna ? GO:0000243 ... P62314 33243851
    601212 7abg:h (7.8) BS01 rna ? GO:0000245 ... P62316 33243851
    601213 7abg:j (7.8) BS01 rna ? GO:0000245 ... P62304 33243851
    601214 7abg:k (7.8) BS01 rna ? GO:0000245 ... P62308 33243851
    601215 7abg:l (7.8) BS01 rna ? GO:0000243 ... P62318 33243851
    601216 7abg:m (7.8) BS01 rna ? GO:0000387 ... P14678 33243851
    601217 7abg:n (7.8) BS01 rna ? GO:0000243 ... P62314 33243851
    601218 7abg:r (7.8) BS01 GTP ? GO:0000398 ... Q15029 33243851
    601219 7abg:u (7.8) BS01 rna ? GO:0000245 ... O75533 33243851
    601220 7abg:u (7.8) BS02 rna ? GO:0000245 ... O75533 33243851
    601221 7abg:y (7.8) BS01 rna ? GO:0000398 ... Q7RTV0 33243851
    601222 7abh:4 (4.5) BS01 rna ? GO:0000375 ... Q12874 33243851
    601223 7abh:F (4.5) BS01 rna ? GO:0000245 ... Q15428 33243851
    601224 7abh:T (4.5) BS01 rna ? GO:0000398 ... Q13435 33243851
    601225 7abh:u (4.5) BS01 rna ? GO:0000245 ... O75533 33243851
    601226 7abh:u (4.5) BS02 rna ? GO:0000245 ... O75533 33243851
    601227 7abh:y (4.5) BS01 rna ? GO:0000398 ... Q7RTV0 33243851
    601228 7abi:4 (8.0) BS01 rna ? GO:0000375 ... Q12874 33243851
    601229 7abi:A (8.0) BS01 rna ? GO:0000244 ... Q6P2Q9 33243851
    601230 7abi:A (8.0) BS02 rna ? GO:0000244 ... Q6P2Q9 33243851
    601231 7abi:A (8.0) BS03 rna ? GO:0000244 ... Q6P2Q9 33243851
    601232 7abi:A (8.0) BS04 rna ? GO:0000244 ... Q6P2Q9 33243851
    601233 7abi:B (8.0) BS01 rna ? GO:0000398 ... P08579 33243851
    601234 7abi:F (8.0) BS01 rna ? GO:0000245 ... Q15428 33243851
    601235 7abi:K (8.0) BS01 rna ? GO:0000398 ... P55081 33243851
    601236 7abi:K (8.0) BS02 rna ? GO:0000398 ... P55081 33243851
    601237 7abi:L (8.0) BS01 rna ? GO:0000077 ... Q99459 33243851
    601238 7abi:N (8.0) BS01 rna ? GO:0000398 ... Q96NC0 33243851
    601239 7abi:O (8.0) BS01 rna ? GO:0000245 ... Q9BZJ0 33243851
    601240 7abi:P (8.0) BS01 rna ? GO:0000398 ... Q9NW64 33243851
    601241 7abi:P (8.0) BS02 rna ? GO:0000398 ... Q9NW64 33243851
    601242 7abi:Q (8.0) BS01 rna ? GO:0000398 ... P41223 33243851
    601243 7abi:T (8.0) BS01 rna ? GO:0000398 ... Q13435 33243851
    601244 7abi:W (8.0) BS01 rna ? GO:0000398 ... P09661 33243851
    601245 7abi:a (8.0) BS01 rna ? GO:0000245 ... P62316 33243851
    601246 7abi:b (8.0) BS01 rna ? GO:0000387 ... P62306 33243851
    601247 7abi:f (8.0) BS01 rna ? GO:0000387 ... P14678 33243851
    601248 7abi:g (8.0) BS01 rna ? GO:0000243 ... P62314 33243851
    601249 7abi:h (8.0) BS01 rna ? GO:0000245 ... P62316 33243851
    601250 7abi:j (8.0) BS01 rna ? GO:0000245 ... P62304 33243851
    601251 7abi:k (8.0) BS01 rna ? GO:0000245 ... P62308 33243851
    601252 7abi:l (8.0) BS01 rna ? GO:0000243 ... P62318 33243851
    601253 7abi:m (8.0) BS01 rna ? GO:0000387 ... P14678 33243851
    601254 7abi:n (8.0) BS01 rna ? GO:0000243 ... P62314 33243851
    601255 7abi:r (8.0) BS01 GTP ? GO:0000398 ... Q15029 33243851
    601256 7abi:u (8.0) BS01 rna ? GO:0000245 ... O75533 33243851
    601257 7abi:u (8.0) BS02 rna ? GO:0000245 ... O75533 33243851
    601258 7abi:v (8.0) BS01 peptide ? GO:0000122 ... Q13573 33243851
    601259 7abi:y (8.0) BS01 rna ? GO:0000398 ... Q7RTV0 33243851
    601260 7abj:A (2.11) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    601261 7abj:A (2.11) BS02 863 3.1.4.53 GO:0004114 ... Q08499 N/A
    601262 7abj:B (2.11) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    601263 7abj:B (2.11) BS02 863 3.1.4.53 GO:0004114 ... Q08499 N/A
    601264 7abj:C (2.11) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    601265 7abj:C (2.11) BS02 863 3.1.4.53 GO:0004114 ... Q08499 N/A
    601266 7abj:D (2.11) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    601267 7abj:D (2.11) BS02 863 3.1.4.53 GO:0004114 ... Q08499 N/A
    601268 7abn:A (1.65) BS01 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601269 7abn:A (1.65) BS02 4LU 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601270 7abn:A (1.65) BS03 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601271 7abn:D (1.65) BS01 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601272 7abn:D (1.65) BS02 4LU 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601273 7abn:D (1.65) BS03 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601274 7abn:H (1.65) BS01 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601275 7abn:H (1.65) BS02 4LU 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601276 7abn:H (1.65) BS03 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601277 7abn:M (1.65) BS01 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601278 7abn:M (1.65) BS02 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601279 7abn:M (1.65) BS03 4LU 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601280 7abo:A (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601281 7abo:A (1.95) BS02 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601282 7abo:B (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601283 7abo:B (1.95) BS02 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601284 7abo:C (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601285 7abo:C (1.95) BS02 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601286 7abo:D (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601287 7abo:D (1.95) BS02 MN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    601288 7abp:A (1.67) BS01 FCA ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.35uM
    601289 7abp:A (1.67) BS02 FCB ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.35uM
    601290 7abr:A (3.7) BS01 peptide ? GO:0005515 ... P37571 35662409
    601291 7abr:A (3.7) BS02 ADP ? GO:0005515 ... P37571 35662409
    601292 7abr:A (3.7) BS03 ADP ? GO:0005515 ... P37571 35662409
    601293 7abr:A (3.7) BS04 ATP ? GO:0005515 ... P37571 35662409
    601294 7abr:B (3.7) BS01 peptide ? GO:0005515 ... P37571 35662409
    601295 7abr:B (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    601296 7abr:B (3.7) BS03 ADP ? GO:0005515 ... P37571 35662409
    601297 7abr:C (3.7) BS01 peptide ? GO:0005515 ... P37571 35662409
    601298 7abr:C (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    601299 7abr:C (3.7) BS03 ATP ? GO:0005515 ... P37571 35662409
    601300 7abr:D (3.7) BS01 peptide ? GO:0005515 ... P37571 35662409
    601301 7abr:D (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    601302 7abr:D (3.7) BS03 ATP ? GO:0005515 ... P37571 35662409
    601303 7abr:D (3.7) BS04 ATP ? GO:0005515 ... P37571 35662409
    601304 7abr:E (3.7) BS01 peptide ? GO:0005515 ... P37571 35662409
    601305 7abr:E (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    601306 7abr:E (3.7) BS03 ATP ? GO:0005515 ... P37571 35662409
    601307 7abr:F (3.7) BS01 ADP ? GO:0005515 ... P37571 35662409
    601308 7abs:A (1.97) BS01 dna 3.1.-.- N/A Q96SD1 34387696
    601309 7abs:A (1.97) BS02 ZN 3.1.-.- N/A Q96SD1 34387696
    601310 7abs:A (1.97) BS03 ZN 3.1.-.- N/A Q96SD1 34387696
    601311 7abt:A (1.31) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 34099711
    601312 7abu:A (1.6) BS01 R6Q 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162 BindingDB: EC50=19800nM
    601313 7abv:A (2.065) BS01 CA ? GO:0007219 ... Q01705 34301900
    601314 7abv:A (2.065) BS02 CA ? GO:0007219 ... Q01705 34301900
    601315 7abv:A (2.065) BS03 CA ? GO:0007219 ... Q01705 34301900
    601316 7abw:A (3.35) BS01 HEM ? GO:0016020 ... Q9I117 34417315
    601317 7abw:A (3.35) BS02 HEM ? GO:0016020 ... Q9I117 34417315
    601318 7abw:A (3.35) BS03 DMU ? GO:0016020 ... Q9I117 34417315
    601319 7abw:A (3.35) BS04 DMU ? GO:0016020 ... Q9I117 34417315
    601320 7abw:A (3.35) BS05 ZN ? GO:0016020 ... Q9I117 34417315
    601321 7abw:B (3.35) BS01 HEM ? GO:0016020 ... Q9I117 34417315
    601322 7abw:B (3.35) BS02 HEM ? GO:0016020 ... Q9I117 34417315
    601323 7abw:B (3.35) BS03 DMU ? GO:0016020 ... Q9I117 34417315
    601324 7abx:A (1.2) BS01 PGA 5.3.1.1 GO:0004807 ... P48499 34258011
    601325 7aby:A (1.45) BS01 FMN 2.7.11.1 N/A P93025 33862085
    601326 7abz:5 (3.21) BS01 rna ? GO:0003723 ... P0A832 34389707
    601327 7abz:5 (3.21) BS02 rna ? GO:0003723 ... P0A832 34389707
    601328 7abz:5 (3.21) BS03 rna ? GO:0003723 ... P0A832 34389707
    601329 7abz:6 (3.21) BS01 rna ? GO:0003723 ... P0CE48 34389707
    601330 7abz:6 (3.21) BS02 rna ? GO:0003723 ... P0CE48 34389707
    601331 7abz:6 (3.21) BS03 KIR ? GO:0003723 ... P0CE48 34389707
    601332 7abz:6 (3.21) BS04 GDP ? GO:0003723 ... P0CE48 34389707
    601333 7abz:A (3.21) BS01 rna N/A GO:0003735 ... N/A 34389707
    601334 7abz:A (3.21) BS02 rna N/A GO:0003735 ... N/A 34389707
    601335 7abz:B (3.21) BS01 rna ? GO:0000027 ... P60422 34389707
    601336 7abz:B (3.21) BS02 rna ? GO:0000027 ... P60422 34389707
    601337 7abz:C (3.21) BS01 rna ? GO:0000027 ... P60438 34389707
    601338 7abz:D (3.21) BS01 rna ? GO:0001070 ... P60723 34389707
    601339 7abz:E (3.21) BS01 rna ? GO:0000027 ... P62399 34389707
    601340 7abz:E (3.21) BS02 rna ? GO:0000027 ... P62399 34389707
    601341 7abz:E (3.21) BS03 rna ? GO:0000027 ... P62399 34389707
    601342 7abz:F (3.21) BS01 rna ? GO:0000027 ... P0AG55 34389707
    601343 7abz:G (3.21) BS01 rna ? GO:0002181 ... P0A7R1 34389707
    601344 7abz:H (3.21) BS01 rna ? GO:0003735 ... P0A7J3 34389707
    601345 7abz:I (3.21) BS01 rna ? GO:0000027 ... P0A7J7 34389707
    601346 7abz:J (3.21) BS01 rna ? GO:0002181 ... P0AA10 34389707
    601347 7abz:K (3.21) BS01 rna ? GO:0002181 ... P0ADY3 34389707
    601348 7abz:K (3.21) BS02 rna ? GO:0002181 ... P0ADY3 34389707
    601349 7abz:L (3.21) BS01 rna ? GO:0002181 ... P02413 34389707
    601350 7abz:M (3.21) BS01 rna ? GO:0000027 ... P0ADY7 34389707
    601351 7abz:M (3.21) BS02 rna ? GO:0000027 ... P0ADY7 34389707
    601352 7abz:M (3.21) BS03 rna ? GO:0000027 ... P0ADY7 34389707
    601353 7abz:N (3.21) BS01 rna ? GO:0000027 ... P0AG44 34389707
    601354 7abz:O (3.21) BS01 rna ? GO:0002181 ... P0C018 34389707
    601355 7abz:O (3.21) BS02 rna ? GO:0002181 ... P0C018 34389707
    601356 7abz:P (3.21) BS01 rna ? GO:0000027 ... P0A7K6 34389707
    601357 7abz:P (3.21) BS02 rna ? GO:0000027 ... P0A7K6 34389707
    601358 7abz:Q (3.21) BS01 rna ? GO:0000027 ... P0A7L3 34389707
    601359 7abz:R (3.21) BS01 rna ? GO:0002181 ... P0AG48 34389707
    601360 7abz:S (3.21) BS01 rna ? GO:0002181 ... P61175 34389707
    601361 7abz:T (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 34389707
    601362 7abz:U (3.21) BS01 rna ? GO:0000027 ... P60624 34389707
    601363 7abz:V (3.21) BS01 rna ? GO:0000027 ... P68919 34389707
    601364 7abz:V (3.21) BS02 rna ? GO:0000027 ... P68919 34389707
    601365 7abz:X (3.21) BS01 rna ? GO:0000027 ... P0A7M2 34389707
    601366 7abz:Y (3.21) BS01 rna ? GO:0000027 ... P0A7M6 34389707
    601367 7abz:Z (3.21) BS01 rna ? GO:0000027 ... P0AG51 34389707
    601368 7abz:b (3.21) BS01 rna ? GO:0000027 ... P0A7N4 34389707
    601369 7abz:c (3.21) BS01 rna ? GO:0000027 ... P0A7N9 34389707
    601370 7abz:d (3.21) BS01 rna ? GO:0002181 ... P0A7P5 34389707
    601371 7abz:e (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 34389707
    601372 7abz:f (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 34389707
    601373 7abz:f (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 34389707
    601374 7abz:g (3.21) BS01 rna ? GO:0000028 ... P0A7V0 34389707
    601375 7abz:h (3.21) BS01 rna ? GO:0003676 ... P0A7V3 34389707
    601376 7abz:h (3.21) BS02 rna ? GO:0003676 ... P0A7V3 34389707
    601377 7abz:i (3.21) BS01 rna ? GO:0000028 ... P0A7V8 34389707
    601378 7abz:i (3.21) BS02 rna ? GO:0000028 ... P0A7V8 34389707
    601379 7abz:j (3.21) BS01 rna ? GO:0000028 ... P0A7W1 34389707
    601380 7abz:k (3.21) BS01 rna ? GO:0003735 ... P02358 34389707
    601381 7abz:l (3.21) BS01 rna ? GO:0003723 ... P02359 34389707
    601382 7abz:l (3.21) BS02 rna ? GO:0003723 ... P02359 34389707
    601383 7abz:m (3.21) BS01 rna ? GO:0000028 ... P0A7W7 34389707
    601384 7abz:n (3.21) BS01 rna ? GO:0000049 ... P0A7X3 34389707
    601385 7abz:o (3.21) BS01 rna ? GO:0000049 ... P0A7R5 34389707
    601386 7abz:p (3.21) BS01 rna ? GO:0002181 ... P0A7R9 34389707
    601387 7abz:q (3.21) BS01 rna ? GO:0000049 ... P0A7S3 34389707
    601388 7abz:r (3.21) BS01 rna ? GO:0000049 ... P0A7S9 34389707
    601389 7abz:s (3.21) BS01 rna ? GO:0000028 ... P0AG59 34389707
    601390 7abz:t (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 34389707
    601391 7abz:t (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 34389707
    601392 7abz:u (3.21) BS01 rna ? GO:0000028 ... P0A7T3 34389707
    601393 7abz:v (3.21) BS01 rna ? GO:0000028 ... P0AG63 34389707
    601394 7abz:w (3.21) BS01 rna ? GO:0003735 ... P0A7T7 34389707
    601395 7abz:x (3.21) BS01 rna ? GO:0003723 ... P0A7U3 34389707
    601396 7abz:y (3.21) BS01 rna ? GO:0000028 ... P0A7U7 34389707
    601397 7abz:z (3.21) BS01 rna ? GO:0003735 ... P68679 34389707
    601398 7abz:z (3.21) BS02 rna ? GO:0003735 ... P68679 34389707
    601399 7ac4:B (1.46) BS01 peptide ? GO:0005179 ... P01315 34473086
    601400 7ac5:A (2.26) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34473086

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).