SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    602001 7af1:A (1.7) BS01 ZN 3.1.-.- N/A Q96SD1 34387696
    602002 7af1:A (1.7) BS02 ZN 3.1.-.- N/A Q96SD1 34387696
    602003 7af1:A (1.7) BS03 ZN 3.1.-.- N/A Q96SD1 34387696
    602004 7af3:B (2.82) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602005 7af3:B (2.82) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602006 7af3:C (2.82) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602007 7af3:G (2.82) BS01 rna ? GO:0000028 ... P02359 34088665
    602008 7af3:I (2.82) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602009 7af3:J (2.82) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602010 7af3:M (2.82) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602011 7af3:N (2.82) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602012 7af3:S (2.82) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602013 7af5:B (2.96) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602014 7af5:B (2.96) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602015 7af5:C (2.96) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602016 7af5:G (2.96) BS01 rna ? GO:0000028 ... P02359 34088665
    602017 7af5:I (2.96) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602018 7af5:J (2.96) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602019 7af5:M (2.96) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602020 7af5:N (2.96) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602021 7af5:S (2.96) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602022 7af8:B (2.75) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602023 7af8:B (2.75) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602024 7af8:C (2.75) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602025 7af8:G (2.75) BS01 rna ? GO:0000028 ... P02359 34088665
    602026 7af8:I (2.75) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602027 7af8:J (2.75) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602028 7af8:M (2.75) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602029 7af8:N (2.75) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602030 7af8:S (2.75) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602031 7afa:B (2.95) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602032 7afa:B (2.95) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602033 7afa:C (2.95) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602034 7afa:G (2.95) BS01 rna ? GO:0000028 ... P02359 34088665
    602035 7afa:I (2.95) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602036 7afa:J (2.95) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602037 7afa:M (2.95) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602038 7afa:N (2.95) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602039 7afa:S (2.95) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602040 7afd:B (3.44) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602041 7afd:B (3.44) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602042 7afd:C (3.44) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602043 7afd:G (3.44) BS01 rna ? GO:0000028 ... P02359 34088665
    602044 7afd:I (3.44) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602045 7afd:J (3.44) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602046 7afd:M (3.44) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602047 7afd:N (3.44) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602048 7afd:S (3.44) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602049 7afh:B (3.59) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602050 7afh:B (3.59) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602051 7afh:C (3.59) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602052 7afh:G (3.59) BS01 rna ? GO:0000028 ... P02359 34088665
    602053 7afh:I (3.59) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602054 7afh:J (3.59) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602055 7afh:M (3.59) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602056 7afh:N (3.59) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602057 7afh:S (3.59) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602058 7afi:D (3.53) BS01 rna ? GO:0000028 ... P0A7V8 34088665
    602059 7afi:E (3.53) BS01 rna ? GO:0000028 ... P0A7W1 34088665
    602060 7afi:F (3.53) BS01 rna ? GO:0002181 ... P02358 34088665
    602061 7afi:H (3.53) BS01 rna ? GO:0000028 ... P0A7W7 34088665
    602062 7afi:K (3.53) BS01 rna ? GO:0002181 ... P0A7R9 34088665
    602063 7afi:L (3.53) BS01 rna ? GO:0000049 ... P0A7S3 34088665
    602064 7afi:O (3.53) BS01 rna ? GO:0000028 ... P0ADZ4 34088665
    602065 7afi:P (3.53) BS01 rna ? GO:0000028 ... P0A7T3 34088665
    602066 7afi:Q (3.53) BS01 rna ? GO:0000028 ... P0AG63 34088665
    602067 7afi:R (3.53) BS01 rna ? GO:0002181 ... P0A7T7 34088665
    602068 7afi:T (3.53) BS01 rna ? GO:0000028 ... P0A7U7 34088665
    602069 7afi:X (3.53) BS01 rna ? GO:0000028 ... P0A8A8 34088665
    602070 7afk:B (4.9) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602071 7afk:B (4.9) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602072 7afk:C (4.9) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602073 7afk:G (4.9) BS01 rna ? GO:0000028 ... P02359 34088665
    602074 7afk:I (4.9) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602075 7afk:J (4.9) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602076 7afk:M (4.9) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602077 7afk:N (4.9) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602078 7afk:S (4.9) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602079 7afl:D (4.2) BS01 rna ? GO:0000028 ... P0A7V8 34088665
    602080 7afl:E (4.2) BS01 rna ? GO:0000028 ... P0A7W1 34088665
    602081 7afl:F (4.2) BS01 rna ? GO:0002181 ... P02358 34088665
    602082 7afl:H (4.2) BS01 rna ? GO:0000028 ... P0A7W7 34088665
    602083 7afl:K (4.2) BS01 rna ? GO:0002181 ... P0A7R9 34088665
    602084 7afl:L (4.2) BS01 rna ? GO:0000049 ... P0A7S3 34088665
    602085 7afl:O (4.2) BS01 rna ? GO:0000028 ... P0ADZ4 34088665
    602086 7afl:P (4.2) BS01 rna ? GO:0000028 ... P0A7T3 34088665
    602087 7afl:Q (4.2) BS01 rna ? GO:0000028 ... P0AG63 34088665
    602088 7afl:R (4.2) BS01 rna ? GO:0002181 ... P0A7T7 34088665
    602089 7afl:T (4.2) BS01 rna ? GO:0000028 ... P0A7U7 34088665
    602090 7afl:V (4.2) BS01 rna ? GO:0005737 ... P0A7G2 34088665
    602091 7afl:X (4.2) BS01 rna ? GO:0000028 ... P0A8A8 34088665
    602092 7afn:B (3.86) BS01 rna ? GO:0000028 ... P0A7V0 34088665
    602093 7afn:B (3.86) BS02 ZN ? GO:0000028 ... P0A7V0 34088665
    602094 7afn:C (3.86) BS01 rna ? GO:0000028 ... P0A7V3 34088665
    602095 7afn:G (3.86) BS01 rna ? GO:0000028 ... P02359 34088665
    602096 7afn:I (3.86) BS01 rna ? GO:0000049 ... P0A7X3 34088665
    602097 7afn:J (3.86) BS01 rna ? GO:0000049 ... P0A7R5 34088665
    602098 7afn:M (3.86) BS01 rna ? GO:0000049 ... P0A7S9 34088665
    602099 7afn:N (3.86) BS01 rna ? GO:0000028 ... P0AG59 34088665
    602100 7afn:S (3.86) BS01 rna ? GO:0000028 ... P0A7U3 34088665
    602101 7afo:D (3.93) BS01 rna ? GO:0000028 ... P0A7V8 34088665
    602102 7afo:E (3.93) BS01 rna ? GO:0000028 ... P0A7W1 34088665
    602103 7afo:F (3.93) BS01 rna ? GO:0002181 ... P02358 34088665
    602104 7afo:H (3.93) BS01 rna ? GO:0000028 ... P0A7W7 34088665
    602105 7afo:K (3.93) BS01 rna ? GO:0002181 ... P0A7R9 34088665
    602106 7afo:L (3.93) BS01 rna ? GO:0000049 ... P0A7S3 34088665
    602107 7afo:O (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 34088665
    602108 7afo:P (3.93) BS01 rna ? GO:0000028 ... P0A7T3 34088665
    602109 7afo:Q (3.93) BS01 rna ? GO:0000028 ... P0AG63 34088665
    602110 7afo:R (3.93) BS01 rna ? GO:0002181 ... P0A7T7 34088665
    602111 7afo:T (3.93) BS01 rna ? GO:0000028 ... P0A7U7 34088665
    602112 7afo:U (3.93) BS01 rna ? GO:0000028 ... P68679 34088665
    602113 7afo:Y (3.93) BS01 rna 2.1.1.182 GO:0000028 ... P06992 34088665
    602114 7afs:A (1.7) BS01 ZN 3.1.-.- N/A Q96SD1 34387696
    602115 7afu:A (1.56) BS01 ZN 3.1.-.- N/A Q96SD1 34387696
    602116 7afv:A (2.4) BS01 SJK ? GO:0000139 ... P61769 33253560
    602117 7afv:B (2.4) BS01 SJK ? GO:0000139 ... P61769 33253560
    602118 7afw:A (1.814) BS01 R9Q ? GO:0007155 ... P35222 33275320 MOAD: Kd=915uM
    602119 7afx:A (1.636) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    602120 7afx:A (1.636) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    602121 7afx:A (1.636) BS03 R9K 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    602122 7afx:B (1.636) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    602123 7afx:B (1.636) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    602124 7afx:B (1.636) BS03 R9K 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    602125 7afy:A (1.105) BS01 RBW 3.5.2.6 GO:0046872 ... Q9XAY4 N/A
    602126 7afy:A (1.105) BS02 ZN 3.5.2.6 GO:0046872 ... Q9XAY4 N/A
    602127 7afy:A (1.105) BS03 ZN 3.5.2.6 GO:0046872 ... Q9XAY4 N/A
    602128 7afz:A (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 34903857
    602129 7afz:A (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 34903857
    602130 7afz:A (1.5) BS03 RBW 3.5.2.6 GO:0008270 ... P52700 34903857
    602131 7ag4:A (2.13) BS01 RB8 5.3.1.31 GO:0005975 ... Q8ZKT7 33791429
    602132 7ag4:B (2.13) BS01 RB8 5.3.1.31 GO:0005975 ... Q8ZKT7 33791429
    602133 7ag4:C (2.13) BS01 RB8 5.3.1.31 GO:0005975 ... Q8ZKT7 33791429
    602134 7ag4:D (2.13) BS01 RB8 5.3.1.31 GO:0005975 ... Q8ZKT7 33791429
    602135 7ag4:E (2.13) BS01 RB8 5.3.1.31 GO:0005975 ... Q8ZKT7 33791429
    602136 7ag4:F (2.13) BS01 RB8 5.3.1.31 GO:0005975 ... Q8ZKT7 33791429
    602137 7ag6:A (2.08) BS01 ADP 2.7.1.184 GO:0005524 ... P32143 33791429
    602138 7ag6:A (2.08) BS02 RB8 2.7.1.184 GO:0005524 ... P32143 33791429
    602139 7ag6:B (2.08) BS01 ADP 2.7.1.184 GO:0005524 ... P32143 33791429
    602140 7ag6:B (2.08) BS02 RB8 2.7.1.184 GO:0005524 ... P32143 33791429
    602141 7ag8:A (2.68) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    602142 7ag8:B (2.68) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    602143 7aga:A (1.68) BS01 LZE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162 BindingDB: EC50=25160nM
    602144 7agb:A (1.7) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602145 7agb:B (1.7) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602146 7agb:C (1.7) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602147 7agb:D (1.7) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602148 7agc:A (1.35) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602149 7agc:B (1.35) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602150 7agc:D (1.35) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602151 7agc:F (1.35) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602152 7agd:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602153 7agd:B (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602154 7agd:C (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602155 7agd:D (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602156 7age:A (1.3) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602157 7age:B (1.3) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602158 7age:D (1.3) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602159 7age:F (1.3) BS01 peptide 3.4.23.24 GO:0004190 ... P32951 33843395
    602160 7agh:A (2.93) BS01 ANP 2.7.1.184 GO:0005524 ... P32143 33791429
    602161 7agh:B (2.93) BS01 ANP 2.7.1.184 GO:0005524 ... P32143 33791429
    602162 7agh:C (2.93) BS01 ANP 2.7.1.184 GO:0005524 ... P32143 33791429
    602163 7agh:D (2.93) BS01 ANP 2.7.1.184 GO:0005524 ... P32143 33791429
    602164 7agi:A (1.7) BS01 ZN 3.1.-.- N/A Q96SD1 34387696
    602165 7agj:A (2.7) BS01 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    602166 7agj:A (2.7) BS02 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    602167 7agj:B (2.7) BS01 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    602168 7agj:B (2.7) BS02 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    602169 7agk:A (2.97) BS01 RAH 2.7.1.184 GO:0005524 ... P32143 33791429
    602170 7agk:B (2.97) BS01 RAH 2.7.1.184 GO:0005524 ... P32143 33791429
    602171 7agk:C (2.97) BS01 RAH 2.7.1.184 GO:0005524 ... P32143 33791429
    602172 7agl:A (1.6) BS01 ZN ? GO:0008745 ... N/A 33158165
    602173 7agm:A (1.35) BS01 ZN 3.5.1.28 GO:0008745 ... A0R5R2 33158165
    602174 7agm:B (1.35) BS01 ZN 3.5.1.28 GO:0008745 ... A0R5R2 33158165
    602175 7agn:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602176 7agn:A (1.15) BS02 RAK 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602177 7agn:B (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602178 7agn:B (1.15) BS02 RAK 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602179 7agn:C (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602180 7agn:C (1.15) BS02 RAK 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602181 7agn:D (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602182 7agn:D (1.15) BS02 RAK 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34328515
    602183 7ago:A (1.7) BS01 ZGL ? GO:0008745 ... N/A 33158165
    602184 7ago:A (1.7) BS02 ZN ? GO:0008745 ... N/A 33158165
    602185 7ags:A (3.1) BS01 DXX 2.3.1.111 GO:0016740 ... Q02251 33237724
    602186 7agu:A (3.1) BS01 DXX 2.3.1.111 GO:0016740 ... Q02251 33237724
    602187 7agv:A (1.85) BS01 CA ? GO:0005886 ... O07535 33790011
    602188 7agv:A (1.85) BS02 2BA ? GO:0005886 ... O07535 33790011
    602189 7agv:B (1.85) BS01 2BA ? GO:0005886 ... O07535 33790011
    602190 7agv:C (1.85) BS01 2BA ? GO:0005886 ... O07535 33790011
    602191 7agv:D (1.85) BS01 2BA ? GO:0005886 ... O07535 33790011
    602192 7agv:E (1.85) BS01 2BA ? GO:0005886 ... O07535 33790011
    602193 7agv:F (1.85) BS01 2BA ? GO:0005886 ... O07535 33790011
    602194 7agv:G (1.85) BS01 CA ? GO:0005886 ... O07535 33790011
    602195 7agv:G (1.85) BS02 2BA ? GO:0005886 ... O07535 33790011
    602196 7agv:H (1.85) BS01 2BA ? GO:0005886 ... O07535 33790011
    602197 7agx:2F (3.6) BS01 peptide ? GO:0005576 ... P41784 33750771
    602198 7agx:2K (3.6) BS01 peptide ? GO:0005576 ... P41784 33750771
    602199 7agz:A (1.52) BS01 PLP 5.1.1.10 GO:0003824 ... Q9KSE5 33680355
    602200 7agz:B (1.52) BS01 PLP 5.1.1.10 GO:0003824 ... Q9KSE5 33680355

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).