SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    603401 7anw:H (2.68) BS01 NAD 3.2.2.-
    3.2.2.6
    GO:0003953 ... Q6SZW1 33185189
    603402 7ao0:A (1.93) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603403 7ao0:A (1.93) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603404 7ao0:B (1.93) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603405 7ao0:B (1.93) BS02 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603406 7ao1:A (1.8) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603407 7ao1:A (1.8) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603408 7ao1:B (1.8) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603409 7ao1:B (1.8) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603410 7ao2:A (1.75) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603411 7ao2:A (1.75) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603412 7ao2:B (1.75) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603413 7ao2:B (1.75) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603414 7ao3:A (1.45) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603415 7ao3:A (1.45) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603416 7ao3:B (1.45) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603417 7ao3:B (1.45) BS02 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603418 7ao5:A (2.06) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603419 7ao5:B (2.06) BS01 MG 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    603420 7ao7:A (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    603421 7ao7:A (2.55) BS02 OC9 ? GO:0004497 ... Q11ZY2 N/A
    603422 7ao7:B (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    603423 7ao7:B (2.55) BS02 OC9 ? GO:0004497 ... Q11ZY2 N/A
    603424 7ao7:C (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    603425 7ao7:C (2.55) BS02 OC9 ? GO:0004497 ... Q11ZY2 N/A
    603426 7ao7:D (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    603427 7ao7:E (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    603428 7ao7:E (2.55) BS02 OC9 ? GO:0004497 ... Q11ZY2 N/A
    603429 7ao7:F (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    603430 7ao8:A (4.5) BS01 IHP ? GO:0000122 ... Q13330 33264408
    603431 7ao8:B (4.5) BS01 IHP 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603432 7ao8:B (4.5) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603433 7ao8:D (4.5) BS01 IHP ? GO:0000122 ... Q13330 33264408
    603434 7ao8:E (4.5) BS01 IHP 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603435 7ao8:E (4.5) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603436 7ao9:A (6.1) BS01 IHP ? GO:0000122 ... Q13330 33264408
    603437 7ao9:B (6.1) BS01 IHP 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603438 7ao9:B (6.1) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603439 7ao9:D (6.1) BS01 IHP ? GO:0000122 ... Q13330 33264408
    603440 7ao9:E (6.1) BS01 IHP 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603441 7ao9:E (6.1) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603442 7aoa:A (19.4) BS01 IHP ? GO:0000122 ... Q13330 33264408
    603443 7aoa:B (19.4) BS01 IHP 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603444 7aoa:B (19.4) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603445 7aoa:D (19.4) BS01 IHP ? GO:0000122 ... Q13330 33264408
    603446 7aoa:E (19.4) BS01 IHP 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603447 7aoa:E (19.4) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q13547 33264408
    603448 7aoc:A (3.84) BS01 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603449 7aoc:A (3.84) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603450 7aoc:A (3.84) BS03 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603451 7aoc:B (3.84) BS01 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    603452 7aoc:I (3.84) BS01 ZN ? GO:0000428 ... O94703 33536435
    603453 7aoc:J (3.84) BS01 ZN ? GO:0000428 ... O13877 33536435
    603454 7aoc:L (3.84) BS01 ZN ? GO:0000428 ... P48011 33536435
    603455 7aod:A (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603456 7aod:A (4.5) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603457 7aod:B (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    603458 7aod:I (4.5) BS01 ZN ? GO:0000428 ... O94703 33536435
    603459 7aod:J (4.5) BS01 ZN ? GO:0000428 ... O13877 33536435
    603460 7aod:L (4.5) BS01 ZN ? GO:0000428 ... P48011 33536435
    603461 7aod:M (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603462 7aod:M (4.5) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603463 7aod:N (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    603464 7aod:U (4.5) BS01 ZN ? GO:0000428 ... O94703 33536435
    603465 7aod:V (4.5) BS01 ZN ? GO:0000428 ... O13877 33536435
    603466 7aod:X (4.5) BS01 ZN ? GO:0000428 ... P48011 33536435
    603467 7aoe:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... P15398 33536435
    603468 7aoe:A (3.9) BS02 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603469 7aoe:A (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... P15398 33536435
    603470 7aoe:B (3.9) BS01 dna 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    603471 7aoe:B (3.9) BS02 rna 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    603472 7aoe:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... Q9P7X8 33536435
    603473 7aoe:I (3.9) BS01 ZN ? GO:0000428 ... O94703 33536435
    603474 7aoe:L (3.9) BS01 ZN ? GO:0000428 ... P48011 33536435
    603475 7aof:A (2.98) BS01 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603476 7aof:A (2.98) BS02 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603477 7aof:A (2.98) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603478 7aof:B (2.98) BS01 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603479 7aof:I (2.98) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    603480 7aog:A (1.5) BS01 peptide ? GO:0000122 ... P31947 34047554
    603481 7aoh:A (2.7) BS01 rna 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603482 7aoh:A (2.7) BS02 dna 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603483 7aoh:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603484 7aoh:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603485 7aoh:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603486 7aoh:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603487 7aoh:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603488 7aoh:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603489 7aoh:J (2.7) BS01 ZN 2.7.7.6 GO:0000428 ... Q49QI2 34556871
    603490 7aoh:Y (2.7) BS01 dna 3.6.1.15 GO:0005524 ... A4GDH1 34556871
    603491 7aoh:Y (2.7) BS02 dna 3.6.1.15 GO:0005524 ... A4GDH1 34556871
    603492 7aoi:A1 (3.5) BS01 rna ? GO:0003735 ... A0A3L6L6A9 33576519
    603493 7aoi:A2 (3.5) BS01 rna ? GO:0003735 ... Q38EM7 33576519
    603494 7aoi:A2 (3.5) BS02 peptide ? GO:0003735 ... Q38EM7 33576519
    603495 7aoi:A3 (3.5) BS01 rna ? N/A A0A3L6L456 33576519
    603496 7aoi:A5 (3.5) BS01 rna ? N/A A0A3L6LD92 33576519
    603497 7aoi:A5 (3.5) BS02 FES ? N/A A0A3L6LD92 33576519
    603498 7aoi:A8 (3.5) BS01 rna ? N/A A0A3L6L070 33576519
    603499 7aoi:A8 (3.5) BS02 peptide ? N/A A0A3L6L070 33576519
    603500 7aoi:AE (3.5) BS01 rna ? GO:0003735 ... Q580R4 33576519
    603501 7aoi:AF (3.5) BS01 rna ? GO:0003735 ... A0A3L6KTM7 33576519
    603502 7aoi:AF (3.5) BS02 peptide ? GO:0003735 ... A0A3L6KTM7 33576519
    603503 7aoi:AF (3.5) BS03 NAD ? GO:0003735 ... A0A3L6KTM7 33576519
    603504 7aoi:AI (3.5) BS01 rna ? GO:0003735 ... A0A3L6L8Y1 33576519
    603505 7aoi:AI (3.5) BS02 peptide ? GO:0003735 ... A0A3L6L8Y1 33576519
    603506 7aoi:AN (3.5) BS01 rna ? GO:0003735 ... A0A3L6LAE5 33576519
    603507 7aoi:AP (3.5) BS01 rna ? GO:0003735 ... A0A3L6L758 33576519
    603508 7aoi:AP (3.5) BS02 NAD ? GO:0003735 ... A0A3L6L758 33576519
    603509 7aoi:AR (3.5) BS01 rna ? GO:0003735 ... A0A3L6LAG5 33576519
    603510 7aoi:AT (3.5) BS01 rna ? N/A A0A3L6LD66 33576519
    603511 7aoi:AT (3.5) BS02 peptide ? N/A A0A3L6LD66 33576519
    603512 7aoi:AU (3.5) BS01 rna ? GO:0003735 ... A0A3L6KV21 33576519
    603513 7aoi:AV (3.5) BS01 rna ? GO:0003723 ... A0A3L6LA68 33576519
    603514 7aoi:AW (3.5) BS01 rna ? GO:0003735 ... A0A3L6L4Z4 33576519
    603515 7aoi:AX (3.5) BS01 rna ? GO:0003735 ... A0A3L6KW11 33576519
    603516 7aoi:AY (3.5) BS01 rna ? GO:0003723 ... C9ZK52 33576519
    603517 7aoi:Ae (3.5) BS01 rna ? N/A A0A3L6KTI0 33576519
    603518 7aoi:Af (3.5) BS01 rna ? N/A A0A3L6KXE9 33576519
    603519 7aoi:Ag (3.5) BS01 rna ? GO:0003735 ... A0A3L6LCE5 33576519
    603520 7aoi:Al (3.5) BS01 rna ? N/A A0A3L6L7H5 33576519
    603521 7aoi:Ao (3.5) BS01 rna ? N/A A0A3L6KS48 33576519
    603522 7aoi:Ap (3.5) BS01 rna ? N/A A0A3L6L3K9 33576519
    603523 7aoi:At (3.5) BS01 rna ? N/A C9ZU82 33576519
    603524 7aoi:Av (3.5) BS01 rna ? N/A A0A3L6KTC7 33576519
    603525 7aoi:Av (3.5) BS02 NAD ? N/A A0A3L6KTC7 33576519
    603526 7aoi:BA (3.5) BS01 rna ? N/A D0A5V6 33576519
    603527 7aoi:BE (3.5) BS01 rna ? N/A C9ZSQ8 33576519
    603528 7aoi:BF (3.5) BS01 rna ? N/A A0A3L6LA84 33576519
    603529 7aoi:BH (3.5) BS01 rna ? N/A A0A3L6KXN2 33576519
    603530 7aoi:BI (3.5) BS01 rna ? N/A A0A3L6KZH2 33576519
    603531 7aoi:BK (3.5) BS01 rna ? N/A C9ZQR6 33576519
    603532 7aoi:BL (3.5) BS01 rna ? N/A A0A3L6L166 33576519
    603533 7aoi:BO (3.5) BS01 rna ? N/A A0A3L6KS29 33576519
    603534 7aoi:BQ (3.5) BS01 rna 5.2.1.8 GO:0000413 ... Q57WF8 33576519
    603535 7aoi:BR (3.5) BS01 rna ? N/A A0A3L6L538 33576519
    603536 7aoi:BR (3.5) BS02 peptide ? N/A A0A3L6L538 33576519
    603537 7aoi:BS (3.5) BS01 rna ? N/A Q38FG8 33576519
    603538 7aoi:BT (3.5) BS01 rna ? N/A A0A3L6L8W0 33576519
    603539 7aoi:BU (3.5) BS01 rna ? N/A A0A3L6KX50 33576519
    603540 7aoi:BW (3.5) BS01 rna ? GO:0005739 ... Q57WW5 33576519
    603541 7aoi:BX (3.5) BS01 rna ? N/A A0A3L6L637 33576519
    603542 7aoi:BX (3.5) BS02 ZN ? N/A A0A3L6L637 33576519
    603543 7aoi:BX (3.5) BS03 ZN ? N/A A0A3L6L637 33576519
    603544 7aoi:Ba (3.5) BS01 rna ? N/A D0A4T0 33576519
    603545 7aoi:Bc (3.5) BS01 rna ? N/A A0A3L6L276 33576519
    603546 7aoi:Bg (3.5) BS01 rna ? N/A A0A3L6LDF0 33576519
    603547 7aoi:Bh (3.5) BS01 ZN ? N/A A0A3L6L2V1 33576519
    603548 7aoi:UK (3.5) BS01 rna N/A GO:0050825 ... N/A 33576519
    603549 7aoi:XA (3.5) BS01 rna ? GO:0005730 ... Q387S8 33576519
    603550 7aoi:XA (3.5) BS02 ZN ? GO:0005730 ... Q387S8 33576519
    603551 7aoi:XB (3.5) BS01 rna ? GO:0003676 ... D0A9G9 33576519
    603552 7aoi:XB (3.5) BS02 ADP ? GO:0003676 ... D0A9G9 33576519
    603553 7aoi:XC (3.5) BS01 rna ? GO:0001522 ... D0A7A5 33576519
    603554 7aoi:XC (3.5) BS02 peptide ? GO:0001522 ... D0A7A5 33576519
    603555 7aoi:XG (3.5) BS01 rna ? GO:0003735 ... A0A3L6LE16 33576519
    603556 7aoi:XH (3.5) BS01 peptide N/A N/A N/A 33576519
    603557 7aoi:XI (3.5) BS01 rna ? GO:0005739 ... Q57U79 33576519
    603558 7aoi:XJ (3.5) BS01 rna 2.7.7.52 N/A A0A3L6L766 33576519
    603559 7aoi:XJ (3.5) BS02 peptide 2.7.7.52 N/A A0A3L6L766 33576519
    603560 7aoi:XL (3.5) BS01 rna ? GO:0005525 ... C9ZS56 33576519
    603561 7aoi:XL (3.5) BS02 GTP ? GO:0005525 ... C9ZS56 33576519
    603562 7aoi:XL (3.5) BS03 GTP ? GO:0005525 ... C9ZS56 33576519
    603563 7aoi:XM (3.5) BS01 peptide ? N/A A0A3L6L7X4 33576519
    603564 7aoi:XN (3.5) BS01 rna ? GO:0005739 ... Q57YY3 33576519
    603565 7aoi:XO (3.5) BS01 rna ? GO:0003723 ... A0A3L6L241 33576519
    603566 7aoi:XP (3.5) BS01 rna ? GO:0001522 ... Q38FJ3 33576519
    603567 7aoi:XS (3.5) BS01 rna ? N/A Q4GZ80 33576519
    603568 7aoi:XT (3.5) BS01 rna ? N/A A0A3L6KWY9 33576519
    603569 7aol:A (1.47) BS01 RQH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162
    603570 7aom:A (1.95) BS01 RQ2 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    603571 7aom:A (1.95) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    603572 7aom:B (1.95) BS01 RQ2 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    603573 7aom:B (1.95) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    603574 7aop:A (2.35) BS01 RTW 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    603575 7aop:A (2.35) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34192523
    603576 7aor:Ca (3.5) BS01 rna ? N/A Q4E4S6 33168716
    603577 7aor:a (3.5) BS01 rna ? GO:0003735 ... Q4DYR0 33168716
    603578 7aor:aa (3.5) BS01 rna ? GO:0016020 ... Q4DVD2 33168716
    603579 7aor:aa (3.5) BS02 ZN ? GO:0016020 ... Q4DVD2 33168716
    603580 7aor:ab (3.5) BS01 rna ? N/A Q4DNX8 33168716
    603581 7aor:ad (3.5) BS01 rna ? N/A Q4DV41 33168716
    603582 7aor:ae (3.5) BS01 rna ? N/A Q4D651 33168716
    603583 7aor:ag (3.5) BS01 rna ? N/A Q4DWR5 33168716
    603584 7aor:aj (3.5) BS01 rna ? N/A Q4DA51 33168716
    603585 7aor:aj (3.5) BS02 UTP ? N/A Q4DA51 33168716
    603586 7aor:al (3.5) BS01 rna ? N/A Q4DRU1 33168716
    603587 7aor:aq (3.5) BS01 rna ? N/A Q4E0X6 33168716
    603588 7aor:ar (3.5) BS01 rna ? GO:0005829 ... Q4DBB7 33168716
    603589 7aor:as (3.5) BS01 rna ? N/A Q4D4G1 33168716
    603590 7aor:at (3.5) BS01 rna ? N/A Q4E1X5 33168716
    603591 7aor:at (3.5) BS02 ZN ? N/A Q4E1X5 33168716
    603592 7aor:at (3.5) BS03 ZN ? N/A Q4E1X5 33168716
    603593 7aor:au (3.5) BS01 rna ? GO:0004792 ... Q4DX83 33168716
    603594 7aor:av (3.5) BS01 rna ? N/A Q4E2I9 33168716
    603595 7aor:aw (3.5) BS01 rna ? N/A Q4D0Q8 33168716
    603596 7aor:ax (3.5) BS01 rna ? N/A Q4DLH4 33168716
    603597 7aor:ay (3.5) BS01 rna ? GO:0016020 ... Q4DX19 33168716
    603598 7aor:az (3.5) BS01 rna ? N/A Q4DX04 33168716
    603599 7aor:b (3.5) BS01 rna ? GO:0003735 ... Q4DZA7 33168716
    603600 7aor:ba (3.5) BS01 rna ? N/A Q4D7F8 33168716

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).