SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    603601 7aor:bb (3.5) BS01 rna ? N/A Q4DMI0 33168716
    603602 7aor:bc (3.5) BS01 rna ? N/A Q4D913 33168716
    603603 7aor:be (3.5) BS01 rna ? GO:0005739 ... A0A2H4T2H0 33168716
    603604 7aor:c (3.5) BS01 rna ? GO:0003735 ... Q4DY17 33168716
    603605 7aor:d (3.5) BS01 rna ? GO:0003735 ... Q4DEW9 33168716
    603606 7aor:e (3.5) BS01 rna ? N/A Q4DEM5 33168716
    603607 7aor:f (3.5) BS01 rna ? GO:0003735 ... Q4CT44 33168716
    603608 7aor:g (3.5) BS01 rna ? N/A Q4DET1 33168716
    603609 7aor:h (3.5) BS01 rna ? N/A Q4DRG2 33168716
    603610 7aor:i (3.5) BS01 rna ? N/A Q4DS13 33168716
    603611 7aor:j (3.5) BS01 rna ? N/A Q4D6Y0 33168716
    603612 7aor:k (3.5) BS01 rna ? GO:0003735 ... A0A2V2XQ88 33168716
    603613 7aor:m (3.5) BS01 rna ? N/A Q4E4E0 33168716
    603614 7aor:n (3.5) BS01 rna ? N/A Q4D583 33168716
    603615 7aor:p (3.5) BS01 rna ? N/A Q4DRR8 33168716
    603616 7aor:q (3.5) BS01 rna ? N/A Q4DUA8 33168716
    603617 7aor:r (3.5) BS01 GTP ? GO:0003735 ... Q4DW24 33168716
    603618 7aor:s (3.5) BS01 rna ? N/A Q4CTU7 33168716
    603619 7aor:t (3.5) BS01 rna ? GO:0005783 ... Q4E2D1 33168716
    603620 7aor:v (3.5) BS01 rna ? N/A Q4DRC8 33168716
    603621 7aor:w (3.5) BS01 rna ? GO:0005739 ... Q4DZS3 33168716
    603622 7aor:y (3.5) BS01 ZN ? GO:0004784 ... Q4CSF0 33168716
    603623 7aor:z (3.5) BS01 rna 3.1.2.4 GO:0005739 ... Q4DD80 33168716
    603624 7aos:A (2.55) BS01 peptide ? GO:0003677 ... P28700 33647291
    603625 7aos:A (2.55) BS02 LG2 ? GO:0003677 ... P28700 33647291
    603626 7aos:B (2.55) BS01 peptide ? GO:0003677 ... P10276 33647291
    603627 7aos:B (2.55) BS02 EQN ? GO:0003677 ... P10276 33647291 BindingDB: EC50=4nM
    603628 7aot:A (0.85) BS01 RTQ 5.2.1.8 GO:0003755 ... Q13451 33843131
    603629 7aou:A (1.16) BS01 RTT 5.2.1.8 GO:0003755 ... Q13451 33843131
    603630 7aov:A (2.00002) BS01 ZN ? N/A A0A0R4IMY7 35634784
    603631 7aov:B (2.00002) BS01 ZN ? N/A A0A0R4IMY7 35634784
    603632 7aoz:A (2.85) BS01 dna 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603633 7aoz:A (2.85) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603634 7aoz:A (2.85) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603635 7aoz:A (2.85) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603636 7aoz:B (2.85) BS01 rna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603637 7aoz:B (2.85) BS02 dna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603638 7aoz:B (2.85) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603639 7aoz:I (2.85) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    603640 7ap1:A (2.18) BS01 RUZ 6.1.1.11 GO:0000166 ... A6T6Z0 33081246
    603641 7ap1:A (2.18) BS02 CA 6.1.1.11 GO:0000166 ... A6T6Z0 33081246
    603642 7ap1:A (2.18) BS03 CA 6.1.1.11 GO:0000166 ... A6T6Z0 33081246
    603643 7ap2:A (2.25) BS01 RRW 6.1.1.4 GO:0000166 ... Q5FAJ3 33081246
    603644 7ap2:A (2.25) BS02 ZN 6.1.1.4 GO:0000166 ... Q5FAJ3 33081246
    603645 7ap3:A (2.0) BS01 RRB 6.1.1.1 GO:0000166 ... P0AGJ9 33081246
    603646 7ap3:B (2.0) BS01 RRB 6.1.1.1 GO:0000166 ... P0AGJ9 33081246
    603647 7ap4:A (2.15) BS01 RSN 6.1.1.12 GO:0000166 ... Q5SKD2 33081246
    603648 7ap4:B (2.15) BS01 RSN 6.1.1.12 GO:0000166 ... Q5SKD2 33081246
    603649 7ap5:AAA (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603650 7ap5:AAA (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603651 7ap5:AAA (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603652 7ap5:BBB (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603653 7ap5:BBB (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603654 7ap5:BBB (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603655 7ap5:BBB (2.131) BS04 RWB N/A GO:0015979 ... N/A N/A
    603656 7ap5:CCC (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603657 7ap5:CCC (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603658 7ap5:CCC (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603659 7ap5:CCC (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    603660 7ap5:DDD (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603661 7ap5:DDD (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603662 7ap5:DDD (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603663 7ap5:EEE (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603664 7ap5:EEE (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603665 7ap5:EEE (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603666 7ap5:EEE (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    603667 7ap5:FFF (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603668 7ap5:FFF (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603669 7ap5:FFF (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603670 7ap5:GGG (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603671 7ap5:GGG (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603672 7ap5:GGG (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603673 7ap5:GGG (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    603674 7ap5:HHH (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603675 7ap5:HHH (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603676 7ap5:HHH (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603677 7ap5:III (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603678 7ap5:III (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603679 7ap5:III (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603680 7ap5:III (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    603681 7ap5:JJJ (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603682 7ap5:JJJ (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603683 7ap5:JJJ (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603684 7ap5:KKK (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603685 7ap5:KKK (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603686 7ap5:KKK (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603687 7ap5:KKK (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    603688 7ap5:LLL (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603689 7ap5:LLL (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603690 7ap5:LLL (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603691 7ap5:LLL (2.131) BS04 RWB N/A GO:0015979 ... N/A N/A
    603692 7ap5:MMM (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603693 7ap5:MMM (2.131) BS02 RWB N/A GO:0015979 ... N/A N/A
    603694 7ap5:MMM (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603695 7ap5:MMM (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    603696 7ap5:MMM (2.131) BS05 PEB N/A GO:0015979 ... N/A N/A
    603697 7ap5:NNN (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603698 7ap5:NNN (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603699 7ap5:NNN (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603700 7ap5:OOO (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603701 7ap5:OOO (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603702 7ap5:PPP (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    603703 7ap5:PPP (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    603704 7ap5:PPP (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    603705 7ap6:A (1.78) BS01 RQN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162 BindingDB: EC50=38240nM
    603706 7ap8:A (3.15) BS01 dna 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603707 7ap8:A (3.15) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603708 7ap8:A (3.15) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603709 7ap8:A (3.15) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603710 7ap8:B (3.15) BS01 rna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603711 7ap8:B (3.15) BS02 dna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603712 7ap8:B (3.15) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603713 7ap8:I (3.15) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    603714 7ap9:A (3.01) BS01 dna 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603715 7ap9:A (3.01) BS02 MG 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603716 7ap9:A (3.01) BS03 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603717 7ap9:A (3.01) BS04 ZN 2.7.7.6 GO:0000428 ... Q1PIV1 34556871
    603718 7ap9:B (3.01) BS01 rna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603719 7ap9:B (3.01) BS02 dna 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603720 7ap9:B (3.01) BS03 ZN 2.7.7.6 GO:0000428 ... Q49PH2 34556871
    603721 7ap9:I (3.01) BS01 ZN ? GO:0003700 ... Q1PIU7 34556871
    603722 7apd:A (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603723 7apd:C (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603724 7apd:D (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603725 7apd:D (3.9) BS02 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603726 7apd:E (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603727 7apd:E (3.9) BS02 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603728 7apd:F (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603729 7apd:G (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603730 7apd:H (3.9) BS01 dna 3.6.4.12 GO:0003677 ... P03116 34545080
    603731 7ape:A (1.7) BS01 GLC ? N/A G7CES0 33476646
    603732 7ape:A (1.7) BS02 GLC ? N/A G7CES0 33476646
    603733 7ape:B (1.7) BS01 GLC ? N/A G7CES0 33476646
    603734 7ape:B (1.7) BS02 GLC ? N/A G7CES0 33476646
    603735 7apf:A (1.95) BS01 RQZ 2.7.10.2 GO:0004672 ... P52333 33291717
    603736 7apf:A (1.95) BS02 PHU 2.7.10.2 GO:0004672 ... P52333 33291717
    603737 7apf:B (1.95) BS01 RQZ 2.7.10.2 GO:0004672 ... P52333 33291717
    603738 7apf:B (1.95) BS02 PHU 2.7.10.2 GO:0004672 ... P52333 33291717
    603739 7apg:A (2.4) BS01 RQT 2.7.10.2 GO:0004672 ... P52333 33291717
    603740 7apg:A (2.4) BS02 PHU 2.7.10.2 GO:0004672 ... P52333 33291717
    603741 7apg:B (2.4) BS01 RQT 2.7.10.2 GO:0004672 ... P52333 33291717
    603742 7apg:B (2.4) BS02 PHU 2.7.10.2 GO:0004672 ... P52333 33291717
    603743 7apg:C (2.4) BS01 RQT 2.7.10.2 GO:0004672 ... P52333 33291717
    603744 7apg:C (2.4) BS02 PHU 2.7.10.2 GO:0004672 ... P52333 33291717
    603745 7apg:D (2.4) BS01 RQT 2.7.10.2 GO:0004672 ... P52333 33291717
    603746 7apg:D (2.4) BS02 PHU 2.7.10.2 GO:0004672 ... P52333 33291717
    603747 7aph:AA (1.65) BS01 RT2 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162
    603748 7api:A (3.0) BS01 CYS ? GO:0004867 ... P01009 2785270
    603749 7apl:A (1.99) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 34387025
    603750 7apm:A (1.66) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 34387025
    603751 7apn:A (2.0) BS01 MG 3.1.1.3 GO:0004806 ... O59952 34602865
    603752 7apn:B (2.0) BS01 MG 3.1.1.3 GO:0004806 ... O59952 34602865
    603753 7apo:A (2.4) BS01 peptide ? GO:0003677 ... P10276 33647291
    603754 7apo:A (2.4) BS02 EQN ? GO:0003677 ... P10276 33647291 BindingDB: EC50=4nM
    603755 7apo:B (2.4) BS01 peptide ? GO:0003677 ... P10276 33647291
    603756 7apo:B (2.4) BS02 EQN ? GO:0003677 ... P10276 33647291 BindingDB: EC50=4nM
    603757 7apq:A (1.09) BS01 RQW 5.2.1.8 GO:0003755 ... Q13451 34820091
    603758 7apr:A (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603759 7apr:B (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603760 7apr:C (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603761 7apr:C (3.1) BS02 NAP ? GO:0000166 ... A0A0H2WWS2 33326741
    603762 7apr:D (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603763 7apr:D (3.1) BS02 NAP ? GO:0000166 ... A0A0H2WWS2 33326741
    603764 7apr:E (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603765 7apr:F (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603766 7apr:F (3.1) BS02 NAP ? GO:0000166 ... A0A0H2WWS2 33326741
    603767 7apr:G (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603768 7apr:H (3.1) BS01 FAD ? GO:0000166 ... A0A0H2WWS2 33326741
    603769 7aps:A (0.94) BS01 RR5 5.2.1.8 GO:0003755 ... Q13451 34820091
    603770 7aps:B (0.94) BS01 RR5 5.2.1.8 GO:0003755 ... Q13451 34820091
    603771 7aps:B (0.94) BS02 RR5 5.2.1.8 GO:0003755 ... Q13451 34820091
    603772 7apt:A (1.131) BS01 RRZ 5.2.1.8 GO:0003755 ... Q13451 34820091
    603773 7apu:A (1.36) BS01 ADP 2.7.4.3 GO:0000287 ... P69441 34250801
    603774 7apu:A (1.36) BS02 ADP 2.7.4.3 GO:0000287 ... P69441 34250801
    603775 7apu:B (1.36) BS01 ADP 2.7.4.3 GO:0000287 ... P69441 34250801
    603776 7apu:B (1.36) BS02 ADP 2.7.4.3 GO:0000287 ... P69441 34250801
    603777 7apv:A (1.95) BS01 9F2 3.1.-.- N/A Q96SD1 34387696
    603778 7apv:A (1.95) BS02 ZN 3.1.-.- N/A Q96SD1 34387696
    603779 7apw:A (0.89) BS01 RSB 5.2.1.8 GO:0003755 ... Q13451 34820091
    603780 7apy:A (1.778) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    603781 7apy:A (1.778) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 33377777
    603782 7apy:B (1.778) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    603783 7apy:B (1.778) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 33377777
    603784 7apz:A (1.97) BS01 ZN ? GO:0006955 ... Q4U5Z6 N/A
    603785 7aq0:A (1.584) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    603786 7aq0:A (1.584) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 33377777
    603787 7aq0:B (1.584) BS01 CA 1.7.2.4 GO:0004129 ... P19573 33377777
    603788 7aq0:B (1.584) BS02 CUA 1.7.2.4 GO:0004129 ... P19573 33377777
    603789 7aq1:A (2.413) BS01 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603790 7aq1:A (2.413) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603791 7aq1:A (2.413) BS03 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603792 7aq1:A (2.413) BS04 ZN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603793 7aq1:A (2.413) BS05 RUE 3.4.24.63 GO:0004222 ... Q16820 34073350 BindingDB: IC50=49nM
    603794 7aq1:A (2.413) BS06 CA 3.4.24.63 GO:0004222 ... Q16820 34073350
    603795 7aq1:A (2.413) BS07 CA 3.4.24.63 GO:0004222 ... Q16820 34073350
    603796 7aq1:B (2.413) BS01 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603797 7aq1:B (2.413) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603798 7aq1:B (2.413) BS03 ZN 3.4.24.63 GO:0004222 ... Q16820 34073350
    603799 7aq1:B (2.413) BS04 RUE 3.4.24.63 GO:0004222 ... Q16820 34073350 BindingDB: IC50=49nM
    603800 7aq1:B (2.413) BS05 CA 3.4.24.63 GO:0004222 ... Q16820 34073350

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).