SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    604001 7aqs:V (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    604002 7aqs:V (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    604003 7aqs:W (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    604004 7aqs:W (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    604005 7aqs:X (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    604006 7aqs:X (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    604007 7aqt:A (-1.00) BS01 EAM ? N/A O60885 35357834
    604008 7aqu:A (1.63) BS01 GLY 1.14.19.59 GO:0000166 ... A1E280 N/A
    604009 7aqu:B (1.63) BS01 GLY 1.14.19.59 GO:0000166 ... A1E280 N/A
    604010 7aqu:B (1.63) BS02 GLY 1.14.19.59 GO:0000166 ... A1E280 N/A
    604011 7aqu:B (1.63) BS03 GLY 1.14.19.59 GO:0000166 ... A1E280 N/A
    604012 7aqu:B (1.63) BS04 GLY 1.14.19.59 GO:0000166 ... A1E280 N/A
    604013 7aqw:g (3.17) BS01 peptide ? GO:0005739 ... Q9SLC8 33768254
    604014 7aqw:n (3.17) BS01 8Q1 ? GO:0000325 ... Q945M1 33768254
    604015 7aqw:p (3.17) BS01 peptide ? GO:0005739 ... Q94C12 33768254
    604016 7aqx:B (1.499) BS01 MAN ? GO:0042783 ... P26332 34731611
    604017 7aqz:A (1.3) BS01 MAN ? GO:0042783 ... P26332 34731611
    604018 7aqz:B (1.3) BS01 MAN ? GO:0042783 ... P26332 34731611
    604019 7ar4:AAA (2.6) BS01 peptide ? GO:0007155 ... P35222 33783110
    604020 7ar7:B (3.72) BS01 SF4 7.1.1.2 GO:0008137 ... Q42577 33768254
    604021 7ar7:D (3.72) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 33768254
    604022 7ar7:E (3.72) BS01 FES 7.1.1.2 GO:0016491 ... O22769 33768254
    604023 7ar7:F (3.72) BS01 FMN 7.1.1.2 GO:0008137 ... Q9FNN5 33768254
    604024 7ar7:F (3.72) BS02 SF4 7.1.1.2 GO:0008137 ... Q9FNN5 33768254
    604025 7ar7:G (3.72) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604026 7ar7:G (3.72) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604027 7ar7:G (3.72) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604028 7ar7:H (3.72) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 33768254
    604029 7ar7:I (3.72) BS01 SF4 7.1.1.2 GO:0016020 ... Q42599 33768254
    604030 7ar7:I (3.72) BS02 SF4 7.1.1.2 GO:0016020 ... Q42599 33768254
    604031 7ar7:M (3.72) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    604032 7ar7:N (3.72) BS01 LMN 7.1.1.2 GO:0005739 ... O05000 33768254
    604033 7ar7:P (3.72) BS01 NDP ? N/A Q9SK66 33768254
    604034 7ar7:R (3.72) BS01 ZN ? N/A Q9M9M6 33768254
    604035 7ar7:T (3.72) BS01 8Q1 ? GO:0006633 ... P53665 33768254
    604036 7ar7:V (3.72) BS01 peptide ? GO:0022904 ... Q9FLX7 33768254
    604037 7ar7:W (3.72) BS01 8Q1 ? GO:0005739 ... Q9LHI0 33768254
    604038 7ar7:d (3.72) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    604039 7ar7:f (3.72) BS01 T7X ? GO:0005739 ... Q84W12 33768254
    604040 7ar7:n (3.72) BS01 8Q1 ? GO:0000325 ... Q945M1 33768254
    604041 7ar7:y (3.72) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    604042 7ar7:y (3.72) BS02 T7X 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    604043 7ar7:z (3.72) BS01 PSF 4.2.1.- N/A Q9FWR5 33768254
    604044 7ar7:z (3.72) BS02 T7X 4.2.1.- N/A Q9FWR5 33768254
    604045 7ar8:B (3.53) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 33768254
    604046 7ar8:B (3.53) BS02 UQ9 7.1.1.2 GO:0005739 ... Q42577 33768254
    604047 7ar8:D (3.53) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 33768254
    604048 7ar8:E (3.53) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33768254
    604049 7ar8:F (3.53) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    604050 7ar8:F (3.53) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    604051 7ar8:G (3.53) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604052 7ar8:G (3.53) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604053 7ar8:G (3.53) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604054 7ar8:H (3.53) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 33768254
    604055 7ar8:I (3.53) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 33768254
    604056 7ar8:I (3.53) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 33768254
    604057 7ar8:M (3.53) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    604058 7ar8:N (3.53) BS01 LMN 7.1.1.2 GO:0005739 ... O05000 33768254
    604059 7ar8:O (3.53) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    604060 7ar8:P (3.53) BS01 NDP ? GO:0005739 ... Q9SK66 33768254
    604061 7ar8:R (3.53) BS01 ZN ? GO:0005739 ... Q9M9M6 33768254
    604062 7ar8:T (3.53) BS01 8Q1 ? GO:0000036 ... P53665 33768254
    604063 7ar8:V (3.53) BS01 peptide ? GO:0005515 ... Q9FLX7 33768254
    604064 7ar8:W (3.53) BS01 8Q1 ? GO:0005739 ... Q9LHI0 33768254
    604065 7ar8:d (3.53) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    604066 7ar8:f (3.53) BS01 T7X ? GO:0005739 ... Q84W12 33768254
    604067 7ar8:n (3.53) BS01 8Q1 ? GO:0000325 ... Q945M1 33768254
    604068 7ar8:y (3.53) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    604069 7ar8:y (3.53) BS02 T7X 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    604070 7ar8:z (3.53) BS01 PSF 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    604071 7ar8:z (3.53) BS02 T7X 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    604072 7ar9:n (2.97) BS01 8Q1 ? GO:0005739 ... A0A024FSS5 33768254
    604073 7ara:A (2.243) BS01 S7N 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0006508 ... P04936 34315103
    604074 7ara:A (2.243) BS02 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0006508 ... P04936 34315103
    604075 7ara:B (2.243) BS01 S7Q 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0006508 ... P04936 34315103
    604076 7ara:B (2.243) BS02 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0006508 ... P04936 34315103
    604077 7arb:B (3.41) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 33768254
    604078 7arb:B (3.41) BS02 UQ9 7.1.1.2 GO:0005739 ... Q42577 33768254
    604079 7arb:D (3.41) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 33768254
    604080 7arb:E (3.41) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33768254
    604081 7arb:F (3.41) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    604082 7arb:F (3.41) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    604083 7arb:G (3.41) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604084 7arb:G (3.41) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604085 7arb:G (3.41) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    604086 7arb:H (3.41) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 33768254
    604087 7arb:I (3.41) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 33768254
    604088 7arb:I (3.41) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 33768254
    604089 7arb:M (3.41) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    604090 7arb:O (3.41) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    604091 7arb:P (3.41) BS01 NDP ? GO:0005739 ... Q9SK66 33768254
    604092 7arb:R (3.41) BS01 ZN ? GO:0005739 ... Q9M9M6 33768254
    604093 7arb:U (3.41) BS01 8Q1 ? GO:0000036 ... O80800 33768254
    604094 7arb:V (3.41) BS01 peptide ? GO:0005515 ... Q9FLX7 33768254
    604095 7arb:W (3.41) BS01 8Q1 ? GO:0005739 ... Q9LHI0 33768254
    604096 7arb:d (3.41) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    604097 7arb:f (3.41) BS01 T7X ? GO:0005739 ... Q84W12 33768254
    604098 7arb:n (3.41) BS01 8Q1 ? GO:0000325 ... Q945M1 33768254
    604099 7arb:y (3.41) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    604100 7arb:z (3.41) BS01 T7X 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    604101 7arb:z (3.41) BS02 PSF 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    604102 7arc:B (2.88) BS01 SF4 ? GO:0005739 ... A0A7S0V8A9 33768254
    604103 7arc:D (2.88) BS01 SF4 ? GO:0016651 ... A0A7S0VKR5 33768254
    604104 7arc:E (2.88) BS01 FES N/A GO:0016491 ... N/A 33768254
    604105 7arc:F (2.88) BS01 FMN 7.1.1.2 GO:0005739 ... A0A7S0V3A3 33768254
    604106 7arc:F (2.88) BS02 SF4 7.1.1.2 GO:0005739 ... A0A7S0V3A3 33768254
    604107 7arc:G (2.88) BS01 peptide N/A GO:0008137 ... N/A 33768254
    604108 7arc:G (2.88) BS02 FES N/A GO:0008137 ... N/A 33768254
    604109 7arc:G (2.88) BS03 SF4 N/A GO:0008137 ... N/A 33768254
    604110 7arc:G (2.88) BS04 SF4 N/A GO:0008137 ... N/A 33768254
    604111 7arc:I (2.88) BS01 peptide ? GO:0003954 ... A0A7S0UQ60 33768254
    604112 7arc:I (2.88) BS02 SF4 ? GO:0003954 ... A0A7S0UQ60 33768254
    604113 7arc:I (2.88) BS03 SF4 ? GO:0003954 ... A0A7S0UQ60 33768254
    604114 7arc:P (2.88) BS01 peptide N/A N/A N/A 33768254
    604115 7arc:P (2.88) BS02 NDP N/A N/A N/A 33768254
    604116 7arc:Q (2.88) BS01 peptide N/A GO:0022900 ... N/A 33768254
    604117 7arc:R (2.88) BS01 peptide N/A N/A N/A 33768254
    604118 7arc:R (2.88) BS02 ZN N/A N/A N/A 33768254
    604119 7arc:U (2.88) BS01 8Q1 ? GO:0000035 ... A0A7S0UWZ2 33768254
    604120 7arc:W (2.88) BS01 8Q1 ? GO:0005739 ... A0A7S0UM40 33768254
    604121 7ard:B (3.11) BS01 SF4 N/A GO:0008137 ... N/A 33768254
    604122 7ard:D (3.11) BS01 SF4 N/A GO:0016651 ... N/A 33768254
    604123 7ard:E (3.11) BS01 FES N/A GO:0016491 ... N/A 33768254
    604124 7ard:F (3.11) BS01 FMN N/A GO:0008137 ... N/A 33768254
    604125 7ard:F (3.11) BS02 SF4 N/A GO:0008137 ... N/A 33768254
    604126 7ard:G (3.11) BS01 peptide N/A GO:0008137 ... N/A 33768254
    604127 7ard:G (3.11) BS02 FES N/A GO:0008137 ... N/A 33768254
    604128 7ard:G (3.11) BS03 SF4 N/A GO:0008137 ... N/A 33768254
    604129 7ard:G (3.11) BS04 SF4 N/A GO:0008137 ... N/A 33768254
    604130 7ard:I (3.11) BS01 peptide N/A GO:0016020 ... N/A 33768254
    604131 7ard:I (3.11) BS02 SF4 N/A GO:0016020 ... N/A 33768254
    604132 7ard:I (3.11) BS03 SF4 N/A GO:0016020 ... N/A 33768254
    604133 7ard:P (3.11) BS01 peptide N/A N/A N/A 33768254
    604134 7ard:P (3.11) BS02 NDP N/A N/A N/A 33768254
    604135 7ard:Q (3.11) BS01 peptide N/A GO:0022900 ... N/A 33768254
    604136 7ard:R (3.11) BS01 peptide N/A N/A N/A 33768254
    604137 7ard:R (3.11) BS02 ZN N/A N/A N/A 33768254
    604138 7ard:U (3.11) BS01 8Q1 N/A GO:0006633 ... N/A 33768254
    604139 7ard:W (3.11) BS01 8Q1 N/A N/A N/A 33768254
    604140 7ard:n (3.11) BS01 8Q1 ? GO:0005739 ... A0A024FSS5 33768254
    604141 7arf:A (2.0) BS01 RVW 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 33811162
    604142 7arg:A (1.24) BS01 RW8 3.1.1.98 GO:0016787 ... Q6P988 34292747
    604143 7arh:C (3.3) BS01 Z41 ? GO:0005515 ... P0ADC3 33782615
    604144 7arh:E (3.3) BS01 peptide ? GO:0005515 ... P75958 33782615
    604145 7arj:C (3.2) BS01 Z41 ? GO:0005515 ... P0ADC3 33782615
    604146 7arj:D (3.2) BS01 ANP 7.6.2.- GO:0005524 ... P75957 33782615
    604147 7arj:D (3.2) BS02 MG 7.6.2.- GO:0005524 ... P75957 33782615
    604148 7arj:F (3.2) BS01 ANP 7.6.2.- GO:0005524 ... P75957 33782615
    604149 7arj:F (3.2) BS02 MG 7.6.2.- GO:0005524 ... P75957 33782615
    604150 7ark:D (4.1) BS01 ANP 7.6.2.- GO:0005524 ... P75957 33782615
    604151 7ark:D (4.1) BS02 ANP 7.6.2.- GO:0005524 ... P75957 33782615
    604152 7ark:F (4.1) BS01 ANP 7.6.2.- GO:0005524 ... P75957 33782615
    604153 7ark:F (4.1) BS02 ANP 7.6.2.- GO:0005524 ... P75957 33782615
    604154 7ark:F (4.1) BS03 MG 7.6.2.- GO:0005524 ... P75957 33782615
    604155 7arl:C (3.2) BS01 Z41 ? GO:0005515 ... P0ADC3 33782615
    604156 7arl:D (3.2) BS01 ADP 7.6.2.- GO:0005524 ... P75957 33782615
    604157 7arl:E (3.2) BS01 peptide ? GO:0005515 ... P75958 33782615
    604158 7arl:F (3.2) BS01 ADP 7.6.2.- GO:0005524 ... P75957 33782615
    604159 7arm:C (3.6) BS01 Z41 ? GO:0005515 ... P0ADC3 33782615
    604160 7aro:A (3.119) BS01 RVZ ? GO:0001609 ... P0ABE7
    P29274    		 33764785
    604161 7aro:A (3.119) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33764785
    604162 7arr:A (1.1) BS01 TFA N/A N/A N/A 34032224
    604163 7arr:B (1.1) BS01 TFA N/A N/A N/A 34032224
    604164 7ars:A (1.15) BS01 peptide N/A N/A N/A 34032224
    604165 7ars:A (1.15) BS02 TFA N/A N/A N/A 34032224
    604166 7aru:A (2.05) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    604167 7aru:A (2.05) BS02 NO5 3.4.17.18 GO:0004181 ... P29068 N/A
    604168 7aru:A (2.05) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    604169 7aru:A (2.05) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    604170 7aru:A (2.05) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    604171 7aru:A (2.05) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    604172 7aru:A (2.05) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    604173 7arw:A (1.31) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 34321462
    604174 7arw:A (1.31) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 34321462
    604175 7arw:A (1.31) BS03 8NA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 34321462
    604176 7arw:B (1.31) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 34321462
    604177 7arw:B (1.31) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 34321462
    604178 7arw:B (1.31) BS03 8NA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 34321462
    604179 7arx:B (2.42) BS01 peptide 3.4.21.- GO:0004252 ... P48740 35378038
    604180 7arz:A (2.15) BS01 NAD 1.17.1.9 GO:0000166 ... A9SQZ2 N/A
    604181 7arz:A (2.15) BS02 AZI 1.17.1.9 GO:0000166 ... A9SQZ2 N/A
    604182 7arz:A (2.15) BS03 AZI 1.17.1.9 GO:0000166 ... A9SQZ2 N/A
    604183 7as0:A (1.55) BS01 21G ? N/A C3W5X5 33673017
    604184 7as1:A (1.5) BS01 21G ? N/A C3W5X5 33673017
    604185 7as2:A (1.75) BS01 21G ? N/A C3W5X5 33673017
    604186 7as3:A (1.65) BS01 21G ? N/A C3W5X5 33673017
    604187 7as3:A (1.65) BS02 21G ? N/A C3W5X5 33673017
    604188 7as4:1 (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604189 7as4:2 (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604190 7as4:O (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604191 7as4:P (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604192 7as4:Q (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604193 7as4:R (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604194 7as4:S (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604195 7as4:T (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604196 7as4:U (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604197 7as4:V (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604198 7as4:W (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604199 7as4:X (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604200 7as4:Y (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).