SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    604201 7as4:Z (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    604202 7as8:0 (2.9) BS01 rna ? GO:0000049 ... O34693 33259810
    604203 7as8:0 (2.9) BS02 rna ? GO:0000049 ... O34693 33259810
    604204 7as8:1 (2.9) BS01 rna ? GO:0000049 ... P37557 33259810
    604205 7as8:1 (2.9) BS02 rna ? GO:0000049 ... P37557 33259810
    604206 7as8:E (2.9) BS01 rna ? GO:0002181 ... P42919 33259810
    604207 7as8:F (2.9) BS01 rna ? GO:0003735 ... P42920 33259810
    604208 7as8:G (2.9) BS01 rna ? GO:0003735 ... P42921 33259810
    604209 7as8:H (2.9) BS01 rna ? GO:0000049 ... P12877 33259810
    604210 7as8:H (2.9) BS02 rna ? GO:0000049 ... P12877 33259810
    604211 7as8:H (2.9) BS03 rna ? GO:0000049 ... P12877 33259810
    604212 7as8:I (2.9) BS01 rna ? GO:0002181 ... P46898 33259810
    604213 7as8:K (2.9) BS01 rna ? GO:0003735 ... Q06796 33259810
    604214 7as8:L (2.9) BS01 rna ? GO:0003735 ... P42923 33259810
    604215 7as8:N (2.9) BS01 rna ? GO:0003729 ... P70974 33259810
    604216 7as8:O (2.9) BS01 rna ? GO:0003735 ... P12875 33259810
    604217 7as8:P (2.9) BS01 rna ? GO:0003735 ... P19946 33259810
    604218 7as8:Q (2.9) BS01 rna ? GO:0000049 ... P14577 33259810
    604219 7as8:Q (2.9) BS02 rna ? GO:0000049 ... P14577 33259810
    604220 7as8:R (2.9) BS01 rna ? GO:0003735 ... P20277 33259810
    604221 7as8:S (2.9) BS01 rna ? GO:0003735 ... P46899 33259810
    604222 7as8:S (2.9) BS02 rna ? GO:0003735 ... P46899 33259810
    604223 7as8:T (2.9) BS01 rna ? GO:0003735 ... O31742 33259810
    604224 7as8:U (2.9) BS01 rna ? GO:0000027 ... P55873 33259810
    604225 7as8:V (2.9) BS01 rna ? GO:0003723 ... P26908 33259810
    604226 7as8:W (2.9) BS01 rna ? GO:0003735 ... P42060 33259810
    604227 7as8:X (2.9) BS01 rna ? GO:0003735 ... P42924 33259810
    604228 7as8:Y (2.9) BS01 rna ? GO:0003677 ... P0CI78 33259810
    604229 7as8:a (2.9) BS01 rna ? GO:0003735 ... P05657 33259810
    604230 7as8:a (2.9) BS02 rna ? GO:0003735 ... P05657 33259810
    604231 7as8:b (2.9) BS01 rna ? GO:0003735 ... P37807 33259810
    604232 7as8:c (2.9) BS01 rna ? GO:0003735 ... P12873 33259810
    604233 7as8:d (2.9) BS01 rna ? GO:0003735 ... P19947 33259810
    604234 7as8:f (2.9) BS01 rna ? GO:0003735 ... O34687 33259810
    604235 7as8:g (2.9) BS01 rna ? GO:0003735 ... P56849 33259810
    604236 7as8:h (2.9) BS01 rna ? GO:0003735 ... P05647 33259810
    604237 7as8:i (2.9) BS01 rna ? GO:0003735 ... P55874 33259810
    604238 7as8:j (2.9) BS01 rna ? GO:0003735 ... P20278 33259810
    604239 7as9:0 (3.5) BS01 rna ? GO:0000049 ... O34693 33259810
    604240 7as9:0 (3.5) BS02 rna ? GO:0000049 ... O34693 33259810
    604241 7as9:E (3.5) BS01 rna ? GO:0002181 ... P42919 33259810
    604242 7as9:F (3.5) BS01 rna ? GO:0003735 ... P42920 33259810
    604243 7as9:G (3.5) BS01 rna ? GO:0003735 ... P42921 33259810
    604244 7as9:H (3.5) BS01 rna ? GO:0000049 ... P12877 33259810
    604245 7as9:H (3.5) BS02 rna ? GO:0000049 ... P12877 33259810
    604246 7as9:I (3.5) BS01 rna ? GO:0002181 ... P46898 33259810
    604247 7as9:K (3.5) BS01 rna ? GO:0003735 ... Q06796 33259810
    604248 7as9:L (3.5) BS01 rna ? GO:0003735 ... P42923 33259810
    604249 7as9:N (3.5) BS01 rna ? GO:0003729 ... P70974 33259810
    604250 7as9:O (3.5) BS01 rna ? GO:0003735 ... P12875 33259810
    604251 7as9:P (3.5) BS01 rna ? GO:0003735 ... P19946 33259810
    604252 7as9:Q (3.5) BS01 rna ? GO:0000049 ... P14577 33259810
    604253 7as9:Q (3.5) BS02 rna ? GO:0000049 ... P14577 33259810
    604254 7as9:R (3.5) BS01 rna ? GO:0003735 ... P20277 33259810
    604255 7as9:S (3.5) BS01 rna ? GO:0003735 ... P46899 33259810
    604256 7as9:S (3.5) BS02 rna ? GO:0003735 ... P46899 33259810
    604257 7as9:T (3.5) BS01 rna ? GO:0003735 ... O31742 33259810
    604258 7as9:U (3.5) BS01 rna ? GO:0000027 ... P55873 33259810
    604259 7as9:V (3.5) BS01 rna ? GO:0003723 ... P26908 33259810
    604260 7as9:W (3.5) BS01 rna ? GO:0003735 ... P42060 33259810
    604261 7as9:X (3.5) BS01 rna ? GO:0003735 ... P42924 33259810
    604262 7as9:Y (3.5) BS01 rna ? GO:0003677 ... P0CI78 33259810
    604263 7as9:a (3.5) BS01 rna ? GO:0003735 ... P05657 33259810
    604264 7as9:a (3.5) BS02 rna ? GO:0003735 ... P05657 33259810
    604265 7as9:b (3.5) BS01 rna ? GO:0003735 ... P37807 33259810
    604266 7as9:c (3.5) BS01 rna ? GO:0003735 ... P12873 33259810
    604267 7as9:d (3.5) BS01 rna ? GO:0003735 ... P19947 33259810
    604268 7as9:d (3.5) BS02 rna ? GO:0003735 ... P19947 33259810
    604269 7as9:f (3.5) BS01 rna ? GO:0003735 ... O34687 33259810
    604270 7as9:g (3.5) BS01 rna ? GO:0003735 ... P56849 33259810
    604271 7as9:h (3.5) BS01 rna ? GO:0003735 ... P05647 33259810
    604272 7as9:i (3.5) BS01 rna ? GO:0003735 ... P55874 33259810
    604273 7as9:j (3.5) BS01 rna ? GO:0003735 ... P20278 33259810
    604274 7asa:0 (3.5) BS01 rna ? GO:0000049 ... O34693 33259810
    604275 7asa:0 (3.5) BS02 rna ? GO:0000049 ... O34693 33259810
    604276 7asa:1 (3.5) BS01 rna ? GO:0000049 ... P37557 33259810
    604277 7asa:K (3.5) BS01 rna ? GO:0003735 ... Q06796 33259810
    604278 7asb:A (1.4) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    604279 7asb:B (1.4) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    604280 7asd:AA (3.5) BS01 94R ? N/A O18330 33293513
    604281 7asd:BA (3.5) BS01 94R ? N/A O18330 33293513
    604282 7asd:CA (3.5) BS01 94R ? N/A O18330 33293513
    604283 7asd:CA (3.5) BS02 94R ? N/A O18330 33293513
    604284 7asd:DA (3.5) BS01 94R ? N/A O18330 33293513
    604285 7asd:DA (3.5) BS02 94R ? N/A O18330 33293513
    604286 7asd:EA (3.5) BS01 94R ? N/A O18330 33293513
    604287 7asd:EA (3.5) BS02 94R ? N/A O18330 33293513
    604288 7asd:FA (3.5) BS01 94R ? N/A O18330 33293513
    604289 7asd:FA (3.5) BS02 94R ? N/A O18330 33293513
    604290 7asd:GA (3.5) BS01 94R ? N/A O18330 33293513
    604291 7asd:HA (3.5) BS01 94R ? N/A O18330 33293513
    604292 7asd:HA (3.5) BS02 94R ? N/A O18330 33293513
    604293 7ase:5 (3.33) BS01 rna 3.6.5.3 GO:0000049 ... Q4CPV7 33357443
    604294 7ase:5 (3.33) BS02 MG 3.6.5.3 GO:0000049 ... Q4CPV7 33357443
    604295 7ase:5 (3.33) BS03 GNP 3.6.5.3 GO:0000049 ... Q4CPV7 33357443
    604296 7ase:A (3.33) BS01 rna ? GO:0003723 ... Q4DCN0 33357443
    604297 7ase:B (3.33) BS01 rna ? GO:0003723 ... A0A2V2WBN2 33357443
    604298 7ase:C (3.33) BS01 rna ? GO:0003723 ... Q4E3G1 33357443
    604299 7ase:D (3.33) BS01 rna ? GO:0003735 ... G0U1J3 33357443
    604300 7ase:F (3.33) BS01 rna ? GO:0000028 ... Q4CQU0 33357443
    604301 7ase:J (3.33) BS01 rna ? GO:0003676 ... Q4DY32 33357443
    604302 7ase:L (3.33) BS01 rna ? GO:0003735 ... Q4D6H7 33357443
    604303 7ase:M (3.33) BS01 rna ? GO:0003723 ... Q4DMK9 33357443
    604304 7ase:N (3.33) BS01 rna ? GO:0003723 ... Q4E088 33357443
    604305 7ase:O (3.33) BS01 rna ? GO:0000028 ... Q4DJY1 33357443
    604306 7ase:P (3.33) BS01 rna ? GO:0003735 ... Q4DSU0 33357443
    604307 7ase:Q (3.33) BS01 rna ? GO:0002181 ... Q4CXR4 33357443
    604308 7ase:R (3.33) BS01 rna ? GO:0003735 ... Q4DC38 33357443
    604309 7ase:S (3.33) BS01 rna ? GO:0003735 ... Q4DN73 33357443
    604310 7ase:T (3.33) BS01 rna ? GO:0000028 ... Q4DGZ5 33357443
    604311 7ase:T (3.33) BS02 rna ? GO:0000028 ... Q4DGZ5 33357443
    604312 7ase:U (3.33) BS01 rna ? GO:0000028 ... A0A061J677 33357443
    604313 7ase:V (3.33) BS01 rna ? GO:0003743 ... Q4DM75 33357443
    604314 7ase:W (3.33) BS01 rna ? GO:0003735 ... Q4DZ41 33357443
    604315 7ase:X (3.33) BS01 rna ? GO:0003735 ... Q4D0U7 33357443
    604316 7ase:Z (3.33) BS01 rna ? GO:0003735 ... Q4DU83 33357443
    604317 7ase:a (3.33) BS01 rna ? GO:0005840 ... Q4DTX6 33357443
    604318 7ase:b (3.33) BS01 rna ? GO:0003735 ... Q4CXX2 33357443
    604319 7ase:c (3.33) BS01 rna ? GO:0003735 ... Q4DA48 33357443
    604320 7ase:d (3.33) BS01 rna ? GO:0003723 ... Q4DIZ9 33357443
    604321 7ase:f (3.33) BS01 rna ? GO:0003676 ... Q4E5Z1 33357443
    604322 7ase:f (3.33) BS02 rna ? GO:0003676 ... Q4E5Z1 33357443
    604323 7ase:g (3.33) BS01 rna ? GO:0003735 ... A0A2V2UKQ3 33357443
    604324 7ase:h (3.33) BS01 rna ? GO:0003735 ... Q4CSL1 33357443
    604325 7ase:i (3.33) BS01 rna ? GO:0003735 ... Q4DK39 33357443
    604326 7ase:j (3.33) BS01 rna ? GO:0003735 ... A0A2V2VP49 33357443
    604327 7ase:l (3.33) BS01 rna ? GO:0003723 ... O62594 33357443
    604328 7ase:m (3.33) BS01 rna ? GO:0003735 ... Q4DTQ1 33357443
    604329 7ase:n (3.33) BS01 rna ? GO:0001731 ... Q4DH88 33357443
    604330 7ase:n (3.33) BS02 rna ? GO:0001731 ... Q4DH88 33357443
    604331 7ase:o (3.33) BS01 rna ? GO:0003723 ... Q4E0Q3 33357443
    604332 7ase:p (3.33) BS01 rna ? GO:0005840 ... Q4DTN2 33357443
    604333 7ase:q (3.33) BS01 rna ? GO:0003735 ... Q4CUC7 33357443
    604334 7ase:r (3.33) BS01 rna ? GO:0000462 ... Q4DEK4 33357443
    604335 7ase:s (3.33) BS01 rna ? GO:0003676 ... Q4E620 33357443
    604336 7ase:t (3.33) BS01 rna ? GO:0003729 ... Q4CYE4 33357443
    604337 7ase:u (3.33) BS01 rna ? GO:0003676 ... Q4E093 33357443
    604338 7ase:v (3.33) BS01 rna ? GO:0003735 ... Q4D6I5 33357443
    604339 7ase:w (3.33) BS01 rna ? GO:0003723 ... A0A2V2WGW5 33357443
    604340 7ase:y (3.33) BS01 rna ? GO:0003735 ... Q4DW38 33357443
    604341 7asj:A (1.43) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34958217
    604342 7asj:A (1.43) BS02 RWH 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 34958217
    604343 7ask:F (4.3) BS01 MG ? GO:0003676 ... Q4E5Z1 33357443
    604344 7ask:F (4.3) BS02 ADP ? GO:0003676 ... Q4E5Z1 33357443
    604345 7asm:1 (2.48) BS01 rna ? GO:0003735 ... Q2FYU6 N/A
    604346 7asm:2 (2.48) BS01 rna ? GO:0003735 ... Q2FUQ0 N/A
    604347 7asm:3 (2.48) BS01 rna ? GO:0003735 ... Q2FXQ0 N/A
    604348 7asm:4 (2.48) BS01 rna ? GO:0003735 ... Q2FW29 N/A
    604349 7asm:C (2.48) BS01 rna ? GO:0002181 ... P60430 N/A
    604350 7asm:D (2.48) BS01 rna ? GO:0003735 ... Q2FW06 N/A
    604351 7asm:E (2.48) BS01 rna ? GO:0003735 ... Q2FW07 N/A
    604352 7asm:F (2.48) BS01 rna ? GO:0003735 ... Q2FW18 N/A
    604353 7asm:F (2.48) BS02 rna ? GO:0003735 ... Q2FW18 N/A
    604354 7asm:G (2.48) BS01 rna ? GO:0002181 ... Q2FW21 N/A
    604355 7asm:H (2.48) BS01 rna ? GO:0003729 ... Q2FW38 N/A
    604356 7asm:I (2.48) BS01 rna ? GO:0003735 ... Q2FW16 N/A
    604357 7asm:J (2.48) BS01 rna ? GO:0003735 ... P0A0F8 N/A
    604358 7asm:K (2.48) BS01 rna ? GO:0000049 ... Q2FW13 N/A
    604359 7asm:K (2.48) BS02 rna ? GO:0000049 ... Q2FW13 N/A
    604360 7asm:L (2.48) BS01 rna ? GO:0003735 ... Q2FW33 N/A
    604361 7asm:M (2.48) BS01 rna ? GO:0003735 ... Q2FW22 N/A
    604362 7asm:M (2.48) BS02 rna ? GO:0003735 ... Q2FW22 N/A
    604363 7asm:N (2.48) BS01 rna ? GO:0003735 ... Q2FZ42 N/A
    604364 7asm:O (2.48) BS01 rna ? GO:0000027 ... Q2FXQ1 N/A
    604365 7asm:P (2.48) BS01 rna ? GO:0003723 ... Q2FXS8 N/A
    604366 7asm:Q (2.48) BS01 rna ? GO:0003735 ... Q2FW11 N/A
    604367 7asm:R (2.48) BS01 rna ? GO:0003735 ... Q2FW08 N/A
    604368 7asm:S (2.48) BS01 rna ? GO:0003723 ... Q2FW17 N/A
    604369 7asm:T (2.48) BS01 rna ? GO:0003735 ... Q2FJE0 N/A
    604370 7asm:U (2.48) BS01 rna ? GO:0003735 ... Q2FXT0 N/A
    604371 7asm:U (2.48) BS02 rna ? GO:0003735 ... Q2FXT0 N/A
    604372 7asm:V (2.48) BS01 rna ? GO:0003735 ... Q2FZ60 N/A
    604373 7asm:W (2.48) BS01 rna ? GO:0003735 ... Q2FW14 N/A
    604374 7asm:X (2.48) BS01 rna ? GO:0003735 ... P0A0G2 N/A
    604375 7asm:Z (2.48) BS01 rna ? GO:0003735 ... Q2FZF1 N/A
    604376 7asn:1 (2.73) BS01 rna ? GO:0003735 ... Q2FYU6 N/A
    604377 7asn:2 (2.73) BS01 rna ? GO:0003735 ... Q2FUQ0 N/A
    604378 7asn:3 (2.73) BS01 rna ? GO:0003735 ... Q2FXQ0 N/A
    604379 7asn:D (2.73) BS01 rna ? GO:0003735 ... Q2FW06 N/A
    604380 7asn:E (2.73) BS01 rna ? GO:0003735 ... Q2FW07 N/A
    604381 7asn:F (2.73) BS01 rna ? GO:0002181 ... P60430 N/A
    604382 7asn:G (2.73) BS01 rna ? GO:0003735 ... Q2FW16 N/A
    604383 7asn:H (2.73) BS01 rna ? GO:0003729 ... Q2FW38 N/A
    604384 7asn:L (2.73) BS01 rna ? GO:0003735 ... P0A0F8 N/A
    604385 7asn:M (2.73) BS01 rna ? GO:0003735 ... Q2FW22 N/A
    604386 7asn:M (2.73) BS02 rna ? GO:0003735 ... Q2FW22 N/A
    604387 7asn:N (2.73) BS01 rna ? GO:0003735 ... Q2FZ42 N/A
    604388 7asn:O (2.73) BS01 rna ? GO:0000027 ... Q2FXQ1 N/A
    604389 7asn:P (2.73) BS01 rna ? GO:0003723 ... Q2FXS8 N/A
    604390 7asn:Q (2.73) BS01 rna ? GO:0003735 ... Q2FW11 N/A
    604391 7asn:R (2.73) BS01 rna ? GO:0003735 ... Q2FW08 N/A
    604392 7asn:S (2.73) BS01 rna ? GO:0003723 ... Q2FW17 N/A
    604393 7asn:T (2.73) BS01 rna ? GO:0003735 ... Q2FJE0 N/A
    604394 7asn:V (2.73) BS01 rna ? GO:0003735 ... Q2FZ60 N/A
    604395 7asn:W (2.73) BS01 rna ? GO:0003735 ... Q2FW14 N/A
    604396 7asn:X (2.73) BS01 rna ? GO:0003735 ... P0A0G2 N/A
    604397 7asn:Y (2.73) BS01 rna ? GO:0000049 ... Q2FW13 N/A
    604398 7asn:a (2.73) BS01 rna ? GO:0003735 ... Q2FXT0 N/A
    604399 7asn:b (2.73) BS01 rna ? GO:0003735 ... Q2FZF1 N/A
    604400 7aso:1 (3.11) BS01 rna N/A GO:0003723 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).