SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    604401 7aso:2 (3.11) BS01 rna ? GO:0003735 ... A0A077UKD6 N/A
    604402 7aso:3 (3.11) BS01 rna ? GO:0000049 ... W8U1C6 N/A
    604403 7aso:4 (3.11) BS01 rna ? GO:0000049 ... W8U8U6 N/A
    604404 7aso:5 (3.11) BS01 rna ? GO:0003735 ... A0A077UGW7 N/A
    604405 7aso:6 (3.11) BS01 rna ? GO:0003735 ... W8U6H8 N/A
    604406 7aso:7 (3.11) BS01 rna N/A GO:0003735 ... N/A N/A
    604407 7aso:8 (3.11) BS01 rna ? GO:0003735 ... A0A077VLD5 N/A
    604408 7aso:9 (3.11) BS01 rna ? GO:0003735 ... A0A077UZF4 N/A
    604409 7aso:A (3.11) BS01 rna ? GO:0003723 ... W8UXC3 N/A
    604410 7aso:B (3.11) BS01 rna ? GO:0003676 ... A0A077UU26 N/A
    604411 7aso:D (3.11) BS01 rna ? GO:0003723 ... W8TUC9 N/A
    604412 7aso:E (3.11) BS01 rna ? GO:0003735 ... W8TPC6 N/A
    604413 7aso:F (3.11) BS01 rna ? GO:0003735 ... W8U8T8 N/A
    604414 7aso:G (3.11) BS01 rna ? GO:0000049 ... A0A077VHU6 N/A
    604415 7aso:H (3.11) BS01 rna ? GO:0003723 ... A0A1Q4GY48 N/A
    604416 7aso:I (3.11) BS01 rna ? GO:0003723 ... A0A077V0P8 N/A
    604417 7aso:J (3.11) BS01 rna ? GO:0003735 ... W8TRC7 N/A
    604418 7aso:K (3.11) BS01 rna ? GO:0000049 ... W8TUC3 N/A
    604419 7aso:K (3.11) BS02 rna ? GO:0000049 ... W8TUC3 N/A
    604420 7aso:L (3.11) BS01 rna ? GO:0002181 ... W8U3X2 N/A
    604421 7aso:M (3.11) BS01 rna ? GO:0003729 ... W8TUE6 N/A
    604422 7aso:N (3.11) BS01 rna ? GO:0003735 ... A0A077UUA0 N/A
    604423 7aso:N (3.11) BS02 rna ? GO:0003735 ... A0A077UUA0 N/A
    604424 7aso:O (3.11) BS01 rna ? GO:0003735 ... A0A077UGA7 N/A
    604425 7aso:P (3.11) BS01 rna ? GO:0000049 ... A0A077V4G0 N/A
    604426 7aso:Q (3.11) BS01 rna ? GO:0003735 ... A0A077UG91 N/A
    604427 7aso:R (3.11) BS01 rna N/A GO:0003735 ... N/A N/A
    604428 7aso:R (3.11) BS02 rna N/A GO:0003735 ... N/A N/A
    604429 7aso:S (3.11) BS01 rna ? GO:0000027 ... A0A077VMP6 N/A
    604430 7aso:T (3.11) BS01 rna ? GO:0003735 ... A0A077V2P0 N/A
    604431 7aso:U (3.11) BS01 rna ? GO:0003723 ... D7URR3 N/A
    604432 7aso:V (3.11) BS01 rna N/A GO:0003735 ... N/A N/A
    604433 7aso:W (3.11) BS01 rna ? GO:0003735 ... W8TUB4 N/A
    604434 7aso:Z (3.11) BS01 rna ? GO:0003723 ... W8TRD5 N/A
    604435 7aso:a (3.11) BS01 rna N/A GO:0003735 ... N/A N/A
    604436 7aso:b (3.11) BS01 rna ? GO:0003735 ... A0A077ULC5 N/A
    604437 7aso:b (3.11) BS02 rna ? GO:0003735 ... A0A077ULC5 N/A
    604438 7aso:c (3.11) BS01 rna ? GO:0003735 ... A0A077URJ8 N/A
    604439 7aso:d (3.11) BS01 rna ? GO:0003735 ... A0A077W1J5 N/A
    604440 7aso:e (3.11) BS01 rna ? GO:0003735 ... W8U3W0 N/A
    604441 7aso:f (3.11) BS01 rna ? GO:0003735 ... W8UVN7 N/A
    604442 7aso:g (3.11) BS01 rna N/A GO:0003735 ... N/A N/A
    604443 7aso:h (3.11) BS01 rna ? GO:0003735 ... W8TRP5 N/A
    604444 7aso:i (3.11) BS01 rna ? GO:0003735 ... W8TQ59 N/A
    604445 7aso:j (3.11) BS01 rna N/A GO:0003735 ... N/A N/A
    604446 7aso:k (3.11) BS01 rna ? GO:0003735 ... A0A077UGV8 N/A
    604447 7aso:l (3.11) BS01 rna ? GO:0003723 ... W8TVK2 N/A
    604448 7asp:1 (2.86) BS01 rna ? GO:0003735 ... A0A077V2P0
    W8UVN7
    N/A
    604449 7asp:2 (2.86) BS01 rna ? GO:0003735 ... A0A077UL47 N/A
    604450 7asp:4 (2.86) BS01 rna ? GO:0003735 ... A0A077UGV8 N/A
    604451 7asp:A (2.86) BS01 rna ? GO:0003735 ... A0A077V2P0
    W8UVN7
    N/A
    604452 7asp:B (2.86) BS01 rna ? GO:0003735 ... W8TQ59 N/A
    604453 7asp:C (2.86) BS01 rna ? GO:0002181 ... B3VKN3 N/A
    604454 7asp:D (2.86) BS01 rna ? GO:0003735 ... W8U3W0 N/A
    604455 7asp:E (2.86) BS01 rna ? GO:0003735 ... W8TRC7 N/A
    604456 7asp:F (2.86) BS01 rna ? GO:0003735 ... A0A6G4QK55 N/A
    604457 7asp:F (2.86) BS02 rna ? GO:0003735 ... A0A6G4QK55 N/A
    604458 7asp:G (2.86) BS01 rna ? GO:0002181 ... W8U3X2 N/A
    604459 7asp:H (2.86) BS01 rna ? GO:0003729 ... W8TUE6 N/A
    604460 7asp:I (2.86) BS01 rna ? GO:0003735 ... A0A077UUA0 N/A
    604461 7asp:J (2.86) BS01 rna ? GO:0003735 ... A0A077UGA7 N/A
    604462 7asp:K (2.86) BS01 rna ? GO:0000049 ... A0A077V4G0 N/A
    604463 7asp:K (2.86) BS02 rna ? GO:0000049 ... A0A077V4G0 N/A
    604464 7asp:L (2.86) BS01 rna ? GO:0003735 ... A0A077UG91 N/A
    604465 7asp:M (2.86) BS01 rna ? GO:0003735 ... W8TRE0 N/A
    604466 7asp:M (2.86) BS02 rna ? GO:0003735 ... W8TRE0 N/A
    604467 7asp:N (2.86) BS01 rna ? GO:0003735 ... A0A077UVB6 N/A
    604468 7asp:O (2.86) BS01 rna ? GO:0000027 ... A0A077VMP6 N/A
    604469 7asp:P (2.86) BS01 rna ? GO:0003723 ... D7URR3 N/A
    604470 7asp:Q (2.86) BS01 rna N/A GO:0003735 ... N/A N/A
    604471 7asp:R (2.86) BS01 rna ? GO:0003735 ... W8TUB4 N/A
    604472 7asp:S (2.86) BS01 rna ? GO:0003723 ... W8TRD5 N/A
    604473 7asp:T (2.86) BS01 rna ? GO:0003735 ... N/A N/A
    604474 7asp:U (2.86) BS01 rna ? GO:0003735 ... A0A077ULC5 N/A
    604475 7asp:U (2.86) BS02 rna ? GO:0003735 ... A0A077ULC5 N/A
    604476 7asp:V (2.86) BS01 rna ? GO:0003735 ... A0A077URJ8 N/A
    604477 7asp:W (2.86) BS01 rna ? GO:0003735 ... A0A077W1J5 N/A
    604478 7asp:Z (2.86) BS01 rna N/A GO:0003735 ... N/A N/A
    604479 7asp:a (2.86) BS01 rna N/A GO:0003723 ... N/A N/A
    604480 7asp:b (2.86) BS01 rna ? GO:0003735 ... A0A077UKD6 N/A
    604481 7asp:c (2.86) BS01 rna ? GO:0000049 ... W8U1C6 N/A
    604482 7asp:d (2.86) BS01 rna ? GO:0000049 ... W8U8U6 N/A
    604483 7asp:e (2.86) BS01 rna ? GO:0003735 ... A0A077UGW7 N/A
    604484 7asp:f (2.86) BS01 rna ? GO:0003735 ... W8U6H8 N/A
    604485 7asp:g (2.86) BS01 rna N/A GO:0003735 ... N/A N/A
    604486 7asp:h (2.86) BS01 rna ? GO:0003735 ... A0A077VLD5 N/A
    604487 7asp:i (2.86) BS01 rna ? GO:0003735 ... A0A077UZF4 N/A
    604488 7asp:j (2.86) BS01 rna ? GO:0003723 ... W8UXC3 N/A
    604489 7asp:k (2.86) BS01 rna ? GO:0003676 ... A0A077UU26 N/A
    604490 7asp:l (2.86) BS01 rna ? GO:0003723 ... W8TVK2 N/A
    604491 7asp:m (2.86) BS01 rna ? GO:0003723 ... W8TUC9 N/A
    604492 7asp:n (2.86) BS01 rna ? GO:0003735 ... W8TPC6 N/A
    604493 7asp:o (2.86) BS01 rna ? GO:0003735 ... W8U8T8 N/A
    604494 7asp:p (2.86) BS01 rna ? GO:0000049 ... A0A077VHU6 N/A
    604495 7asp:q (2.86) BS01 rna ? GO:0003723 ... A0A1Q4GY48 N/A
    604496 7asq:A (0.95) BS01 U5P 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    604497 7ass:C (1.91) BS01 RYE 3.5.2.6 GO:0008658 ... Q6XEC0 33910990
    604498 7ass:D (1.91) BS01 RYE 3.5.2.6 GO:0008658 ... Q6XEC0 33910990
    604499 7at1:A (2.8) BS01 GLC 2.1.3.2 GO:0004070 ... P0A786 2271529
    604500 7at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2271529
    604501 7at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2271529
    604502 7at1:B (2.8) BS02 ATP ? GO:0005515 ... P0A7F3 2271529
    604503 7at1:C (2.8) BS01 GLC 2.1.3.2 GO:0004070 ... P0A786 2271529
    604504 7at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2271529
    604505 7at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2271529
    604506 7at3:A (1.4) BS01 NPX N/A GO:0016787 ... N/A 33680362
    604507 7at3:B (1.4) BS01 NPX N/A GO:0016787 ... N/A 33680362
    604508 7at4:A (1.7) BS01 NPX N/A GO:0016787 ... N/A 33680362
    604509 7at4:A (1.7) BS02 NPX N/A GO:0016787 ... N/A 33680362
    604510 7at4:A (1.7) BS03 NPX N/A GO:0016787 ... N/A 33680362
    604511 7at4:A (1.7) BS04 NPX N/A GO:0016787 ... N/A 33680362
    604512 7at5:A (1.77) BS01 RXE 2.7.11.1 GO:0004672 ... P68400 34323071
    604513 7at5:A (1.77) BS02 42J 2.7.11.1 GO:0004672 ... P68400 34323071 BindingDB: IC50=700000nM
    604514 7at5:B (1.77) BS01 RXE 2.7.11.1 GO:0004672 ... P68400 34323071
    604515 7at5:B (1.77) BS02 42J 2.7.11.1 GO:0004672 ... P68400 34323071 BindingDB: IC50=700000nM
    604516 7at8:A (4.4) BS01 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604517 7at8:A (4.4) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604518 7at8:A (4.4) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604519 7at8:A (4.4) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604520 7at8:A (4.4) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604521 7at8:A (4.4) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604522 7at8:A (4.4) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 33211010
    604523 7at8:A (4.4) BS08 SAH 2.1.1.356 GO:0006338 ... Q15910 33211010 BindingDB: IC50=467nM
    604524 7at8:D (4.4) BS01 dna ? GO:0000786 ... P84233 33211010
    604525 7at8:D (4.4) BS02 dna ? GO:0000786 ... P84233 33211010
    604526 7at8:E (4.4) BS01 dna ? GO:0000786 ... P62799 33211010
    604527 7at8:E (4.4) BS02 dna ? GO:0000786 ... P62799 33211010
    604528 7at8:F (4.4) BS01 dna ? GO:0000786 ... P06897 33211010
    604529 7at8:F (4.4) BS02 dna ? GO:0000786 ... P06897 33211010
    604530 7at8:G (4.4) BS01 dna ? GO:0000786 ... P02281 33211010
    604531 7at8:G (4.4) BS02 dna ? GO:0000786 ... P02281 33211010
    604532 7at8:H (4.4) BS01 dna ? GO:0000786 ... P84233 33211010
    604533 7at8:H (4.4) BS02 dna ? GO:0000786 ... P84233 33211010
    604534 7at8:I (4.4) BS01 dna ? GO:0000786 ... P62799 33211010
    604535 7at8:I (4.4) BS02 dna ? GO:0000786 ... P62799 33211010
    604536 7at8:J (4.4) BS01 dna ? GO:0000786 ... P06897 33211010
    604537 7at8:J (4.4) BS02 dna ? GO:0000786 ... P06897 33211010
    604538 7at8:K (4.4) BS01 dna ? GO:0000786 ... P02281 33211010
    604539 7at8:K (4.4) BS02 dna ? GO:0000786 ... P02281 33211010
    604540 7at9:A (1.05) BS01 42J 2.7.11.1 GO:0000785 ... P19784 34323071
    604541 7at9:A (1.05) BS02 4B0 2.7.11.1 GO:0000785 ... P19784 34323071
    604542 7at9:A (1.05) BS03 42J 2.7.11.1 GO:0000785 ... P19784 34323071
    604543 7atd:B (1.45) BS01 RXH N/A GO:0016787 ... N/A 33680362
    604544 7ate:A (2.4) BS01 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    604545 7ate:A (2.4) BS02 HEA 7.1.1.9 GO:0004129 ... P98002 N/A
    604546 7ate:A (2.4) BS03 HEA 7.1.1.9 GO:0004129 ... P98002 N/A
    604547 7ate:A (2.4) BS04 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    604548 7ate:A (2.4) BS05 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    604549 7ate:B (2.4) BS01 CUA 7.1.1.9 GO:0004129 ... P08306 N/A
    604550 7atf:A (1.2) BS01 NPO N/A GO:0016787 ... N/A 33680362
    604551 7atf:B (1.2) BS01 NPO N/A GO:0016787 ... N/A 33680362
    604552 7ath:AAA (2.343) BS01 ZN N/A N/A N/A 34556817
    604553 7ati:A (1.51) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    604554 7ati:B (1.51) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    604555 7atj:A (1.47) BS01 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    604556 7atj:A (1.47) BS02 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    604557 7atj:A (1.47) BS03 CYN 1.11.1.7 GO:0004601 ... P00433 10574977
    604558 7atj:A (1.47) BS04 HEM 1.11.1.7 GO:0004601 ... P00433 10574977
    604559 7atj:A (1.47) BS05 FER 1.11.1.7 GO:0004601 ... P00433 10574977
    604560 7atj:A (1.47) BS06 FER 1.11.1.7 GO:0004601 ... P00433 10574977
    604561 7atk:AAA (2.855) BS01 ZN N/A N/A N/A 34556817
    604562 7atk:AAA (2.855) BS02 ZN N/A N/A N/A 34556817
    604563 7atm:A (1.582) BS01 RY2 3.4.16.4 GO:0000917 ... G3XD46 34337941
    604564 7atn:A (2.66) BS01 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    604565 7atn:A (2.66) BS02 HEA 7.1.1.9 GO:0004129 ... P98002 N/A
    604566 7atn:A (2.66) BS03 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    604567 7atn:A (2.66) BS04 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    604568 7atn:A (2.66) BS05 HEA 7.1.1.9 GO:0004129 ... P98002 N/A
    604569 7atn:B (2.66) BS01 CUA 7.1.1.9 GO:0004129 ... P08306 N/A
    604570 7ato:A (1.587) BS01 RXW 3.4.16.4 GO:0000917 ... G3XD46 34337941
    604571 7atp:A (2.1) BS01 CA ? GO:0008289 ... Q9SKR2 34408000
    604572 7atp:A (2.1) BS02 CA ? GO:0008289 ... Q9SKR2 34408000
    604573 7atq:A (1.59) BS01 RXK N/A GO:0016787 ... N/A 33680362
    604574 7atr:A (1.55) BS01 peptide ? GO:0006857 ... P33913 N/A
    604575 7ats:A (2.8) BS01 RXQ 2.7.11.1 GO:0004672 ... P53667 N/A
    604576 7atu:A (2.8) BS01 RXN 2.7.11.1 GO:0004672 ... P53667 N/A
    604577 7atu:B (2.8) BS01 RXN 2.7.11.1 GO:0004672 ... P53667 N/A
    604578 7atu:C (2.8) BS01 RXN 2.7.11.1 GO:0004672 ... P53667 N/A
    604579 7atu:D (2.8) BS01 RXN 2.7.11.1 GO:0004672 ... P53667 N/A
    604580 7atv:A (0.98) BS01 RXE 2.7.11.1 GO:0000785 ... P19784 34323071
    604581 7atw:A (1.44) BS01 RZZ 3.4.16.4 GO:0000917 ... G3XD46 34337941
    604582 7atx:A (1.795) BS01 S1B 3.4.16.4 GO:0000917 ... G3XD46 34337941
    604583 7au0:A (2.17) BS01 S0Z 3.4.16.4 GO:0000917 ... G3XD46 34337941
    604584 7au1:A (1.36) BS01 S08 3.4.16.4 GO:0000917 ... G3XD46 34337941
    604585 7au3:A (2.56) BS01 MN 7.1.1.9 GO:0004129 ... P98002 N/A
    604586 7au3:A (2.56) BS02 HEA 7.1.1.9 GO:0004129 ... P98002 N/A
    604587 7au3:A (2.56) BS03 HEA 7.1.1.9 GO:0004129 ... P98002 N/A
    604588 7au3:A (2.56) BS04 CU 7.1.1.9 GO:0004129 ... P98002 N/A
    604589 7au3:A (2.56) BS05 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    604590 7au3:A (2.56) BS06 2FK 7.1.1.9 GO:0004129 ... P98002 N/A
    604591 7au3:B (2.56) BS01 CUA 7.1.1.9 GO:0004129 ... P08306 N/A
    604592 7au4:A (1.82) BS01 RY5 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35142215
    604593 7au5:A (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34159741
    604594 7au5:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 34159741
    604595 7au5:A (2.2) BS03 RYK 3.6.5.- GO:0000226 ... P81947 34159741
    604596 7au5:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 34159741
    604597 7au5:B (2.2) BS02 RYK ? GO:0000226 ... Q6B856 34159741
    604598 7au5:C (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 34159741
    604599 7au5:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 34159741
    604600 7au5:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 34159741

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).