SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    605601 7b0y:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    605602 7b0y:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    605603 7b0y:B (3.6) BS03 dna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    605604 7b0y:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    605605 7b0y:C (3.6) BS01 ZN ? GO:0000428 ... I3LCH3 33446560
    605606 7b0y:E (3.6) BS01 dna ? GO:0001054 ... I3LSI7 33446560
    605607 7b0y:I (3.6) BS01 ZN ? GO:0000428 ... P60899 33446560
    605608 7b0y:I (3.6) BS02 ZN ? GO:0000428 ... P60899 33446560
    605609 7b0y:J (3.6) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33446560
    605610 7b0y:L (3.6) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 33446560
    605611 7b0y:b (3.6) BS01 rna ? GO:0000398 ... P08621 33446560
    605612 7b0y:c (3.6) BS01 rna ? GO:0000398 ... P09012 33446560
    605613 7b0y:e (3.6) BS01 rna ? GO:0000245 ... P62316 33446560
    605614 7b0y:f (3.6) BS01 rna ? GO:0000387 ... P62306 33446560
    605615 7b0y:g (3.6) BS01 rna ? GO:0000245 ... P62304 33446560
    605616 7b0y:h (3.6) BS01 rna ? GO:0000245 ... P62308 33446560
    605617 7b0y:i (3.6) BS01 rna ? GO:0000243 ... P62318 33446560
    605618 7b0y:j (3.6) BS01 rna ? GO:0003723 ... Q66K91 33446560
    605619 7b0y:k (3.6) BS01 rna ? GO:0000243 ... P62314 33446560
    605620 7b0z:A (2.1) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 34262643
    605621 7b0z:A (2.1) BS02 SK5 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 34262643
    605622 7b0z:A (2.1) BS03 C15 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 34262643
    605623 7b0z:B (2.1) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 34262643
    605624 7b0z:B (2.1) BS02 SK5 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 34262643
    605625 7b0z:B (2.1) BS03 C15 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 34262643
    605626 7b10:A (1.92) BS01 GKT ? N/A Q03111 33749253
    605627 7b12:H (2.43) BS01 SKN 3.4.25.1 GO:0000502 ... P28065 34228444
    605628 7b12:L (2.43) BS01 SKN 3.4.25.1 GO:0004298 ... P28062 34228444
    605629 7b12:V (2.43) BS01 SKN 3.4.25.1 GO:0000502 ... P28065 34228444
    605630 7b12:Z (2.43) BS01 SKN 3.4.25.1 GO:0004298 ... P28062 34228444
    605631 7b12:i (2.43) BS01 SKN 3.4.25.1 GO:0004298 ... P40306 34228444
    605632 7b12:w (2.43) BS01 SKN 3.4.25.1 GO:0004298 ... P40306 34228444
    605633 7b13:A (1.37) BS01 peptide ? GO:0000122 ... P31947 N/A
    605634 7b13:A (1.37) BS02 MG ? GO:0000122 ... P31947 N/A
    605635 7b15:A (1.59) BS01 peptide ? GO:0000122 ... P31947 N/A
    605636 7b15:A (1.59) BS02 MG ? GO:0000122 ... P31947 N/A
    605637 7b16:A (3.15) BS01 SKQ ? GO:0005216 ... U3N7D8 33236980
    605638 7b16:A (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    605639 7b16:B (3.15) BS01 SKQ ? GO:0005216 ... U3N7D8 33236980
    605640 7b16:B (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    605641 7b16:C (3.15) BS01 SKQ ? GO:0005216 ... U3N7D8 33236980
    605642 7b16:C (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    605643 7b16:D (3.15) BS01 SKQ ? GO:0005216 ... U3N7D8 33236980
    605644 7b16:D (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    605645 7b19:A (2.55) BS01 AD9 ? GO:0003774 ... P08799 33374308
    605646 7b19:A (2.55) BS02 MG ? GO:0003774 ... P08799 33374308
    605647 7b1a:A (2.6) BS01 MG ? GO:0003774 ... P08799 33374308
    605648 7b1a:A (2.6) BS02 AD9 ? GO:0003774 ... P08799 33374308
    605649 7b1e:A (1.62) BS01 SKW 3.4.23.46 GO:0004190 ... P56817 33844524 BindingDB: IC50=37nM
    605650 7b1f:A (1.75) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605651 7b1f:A (1.75) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605652 7b1f:B (1.75) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605653 7b1f:B (1.75) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605654 7b1g:A (3.6) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    605655 7b1g:A (3.6) BS02 44E ? GO:0005216 ... U3N7D8 33236980
    605656 7b1g:B (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    605657 7b1g:B (3.6) BS02 44E ? GO:0005216 ... U3N7D8 33236980
    605658 7b1g:B (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    605659 7b1g:C (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    605660 7b1g:C (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    605661 7b1g:C (3.6) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    605662 7b1g:D (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    605663 7b1g:D (3.6) BS02 44E ? GO:0005216 ... U3N7D8 33236980
    605664 7b1g:D (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    605665 7b1h:A (2.4) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605666 7b1h:A (2.4) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605667 7b1h:B (2.4) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605668 7b1h:B (2.4) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605669 7b1h:E (2.4) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605670 7b1h:E (2.4) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605671 7b1h:F (2.4) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605672 7b1h:F (2.4) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605673 7b1j:A (2.9) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605674 7b1j:A (2.9) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605675 7b1j:B (2.9) BS01 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605676 7b1j:B (2.9) BS02 peptide ? GO:0007094 ... Q9Y6D9 34013668
    605677 7b1k:A (2.2) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    605678 7b1k:A (2.2) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    605679 7b1k:A (2.2) BS03 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    605680 7b1k:B (2.2) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    605681 7b1k:B (2.2) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    605682 7b1k:B (2.2) BS03 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    605683 7b1l:A (1.85) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    605684 7b1l:A (1.85) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    605685 7b1l:A (1.85) BS03 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    605686 7b1l:A (1.85) BS04 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    605687 7b1l:A (1.85) BS05 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    605688 7b1l:B (1.85) BS01 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    605689 7b1l:B (1.85) BS02 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    605690 7b1l:B (1.85) BS03 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    605691 7b1l:B (1.85) BS04 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    605692 7b1l:B (1.85) BS05 SER 2.7.8.8 GO:0003882 ... Q58609 N/A
    605693 7b1n:A (2.8) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    605694 7b1n:A (2.8) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    605695 7b1n:B (2.8) BS01 58A 2.7.8.8 GO:0003882 ... Q58609 N/A
    605696 7b1n:B (2.8) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    605697 7b1o:A (2.58) BS01 SLW 1.13.11.52 GO:0002376 ... P14902 34292726
    605698 7b1o:B (2.58) BS01 SLW 1.13.11.52 GO:0002376 ... P14902 34292726
    605699 7b1p:A (1.77) BS01 SL8 3.4.23.46 GO:0004190 ... P56817 33844524 BindingDB: IC50=20nM
    605700 7b1q:A (1.94) BS01 SLK 3.4.23.46 GO:0004190 ... P56817 33844524 BindingDB: IC50=10nM
    605701 7b1s:A (0.992) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605702 7b1s:A (0.992) BS02 MN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605703 7b1s:A (0.992) BS03 USN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605704 7b1s:A (0.992) BS04 COM 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605705 7b1s:A (0.992) BS05 USN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605706 7b1s:A (0.992) BS06 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605707 7b1s:B (0.992) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    605708 7b1s:B (0.992) BS02 USN 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    605709 7b1s:B (0.992) BS03 COM 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    605710 7b1s:C (0.992) BS01 USN 2.8.4.1 GO:0015948 ... A0A7R9R6T0 34210888
    605711 7b1s:C (0.992) BS02 COM 2.8.4.1 GO:0015948 ... A0A7R9R6T0 34210888
    605712 7b1s:C (0.992) BS03 UUT 2.8.4.1 GO:0015948 ... A0A7R9R6T0 34210888
    605713 7b1s:D (0.992) BS01 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605714 7b1s:D (0.992) BS02 MN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605715 7b1s:D (0.992) BS03 USN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605716 7b1s:D (0.992) BS04 USN 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605717 7b1s:D (0.992) BS05 TP7 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605718 7b1s:D (0.992) BS06 COM 2.8.4.1 GO:0015948 ... A0A7R9R780 34210888
    605719 7b1s:E (0.992) BS01 USN 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    605720 7b1s:E (0.992) BS02 TP7 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    605721 7b1s:E (0.992) BS03 COM 2.8.4.1 GO:0015948 ... A0A7R9N4Z1 34210888
    605722 7b1s:F (0.992) BS01 USN 2.8.4.1 GO:0015948 ... A0A7R9R6T0 34210888
    605723 7b1s:F (0.992) BS02 COM 2.8.4.1 GO:0015948 ... A0A7R9R6T0 34210888
    605724 7b1t:A (1.92) BS01 SOK ? N/A O60885 36736153
    605725 7b1u:A (1.59) BS01 L2K ? GO:0005515 ... P0A2U4 N/A
    605726 7b1u:B (1.59) BS01 L2K ? GO:0005515 ... P0A2U4 N/A
    605727 7b1v:A (2.04) BS01 CO ? GO:0003677 ... N/A 34417623
    605728 7b1v:A (2.04) BS02 CO ? GO:0003677 ... N/A 34417623
    605729 7b1v:B (2.04) BS01 CO ? GO:0003677 ... N/A 34417623
    605730 7b1v:B (2.04) BS02 CO ? GO:0003677 ... N/A 34417623
    605731 7b1w:A (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605732 7b1w:B (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605733 7b1w:C (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605734 7b1w:D (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605735 7b1w:E (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605736 7b1w:F (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605737 7b1w:G (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605738 7b1w:H (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605739 7b1w:I (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605740 7b1w:J (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605741 7b1w:K (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605742 7b1w:L (1.935) BS01 ZN 5.1.3.1 GO:0004750 ... A8IKW6 38134324
    605743 7b1y:A (2.12) BS01 dna ? GO:0003677 ... N/A 34417623
    605744 7b1y:A (2.12) BS02 dna ? GO:0003677 ... N/A 34417623
    605745 7b1y:A (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    605746 7b1y:A (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    605747 7b1y:B (2.12) BS01 dna ? GO:0003677 ... N/A 34417623
    605748 7b1y:B (2.12) BS02 dna ? GO:0003677 ... N/A 34417623
    605749 7b1y:B (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    605750 7b1y:B (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    605751 7b1y:C (2.12) BS01 dna ? GO:0003677 ... N/A 34417623
    605752 7b1y:C (2.12) BS02 dna ? GO:0003677 ... N/A 34417623
    605753 7b1y:C (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    605754 7b1y:C (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    605755 7b1y:D (2.12) BS01 dna ? GO:0003677 ... N/A 34417623
    605756 7b1y:D (2.12) BS02 dna ? GO:0003677 ... N/A 34417623
    605757 7b1y:D (2.12) BS03 CO ? GO:0003677 ... N/A 34417623
    605758 7b1y:D (2.12) BS04 CO ? GO:0003677 ... N/A 34417623
    605759 7b1y:aa (2.12) BS01 CO ? GO:0003677 ... N/A 34417623
    605760 7b1y:dd (2.12) BS01 CO ? GO:0003677 ... N/A 34417623
    605761 7b20:A (2.18) BS01 dna ? GO:0003677 ... N/A 34417623
    605762 7b20:A (2.18) BS02 dna ? GO:0003677 ... N/A 34417623
    605763 7b20:A (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    605764 7b20:A (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    605765 7b20:B (2.18) BS01 dna ? GO:0003677 ... N/A 34417623
    605766 7b20:B (2.18) BS02 dna ? GO:0003677 ... N/A 34417623
    605767 7b20:B (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    605768 7b20:B (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    605769 7b20:C (2.18) BS01 dna ? GO:0003677 ... N/A 34417623
    605770 7b20:C (2.18) BS02 dna ? GO:0003677 ... N/A 34417623
    605771 7b20:C (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    605772 7b20:C (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    605773 7b20:D (2.18) BS01 dna ? GO:0003677 ... N/A 34417623
    605774 7b20:D (2.18) BS02 dna ? GO:0003677 ... N/A 34417623
    605775 7b20:D (2.18) BS03 FE2 ? GO:0003677 ... N/A 34417623
    605776 7b20:D (2.18) BS04 FE2 ? GO:0003677 ... N/A 34417623
    605777 7b20:aa (2.18) BS01 FE2 ? GO:0003677 ... N/A 34417623
    605778 7b20:dd (2.18) BS01 FE2 ? GO:0003677 ... N/A 34417623
    605779 7b21:AAA (1.2) BS01 HEC ? GO:0009055 ... B3PLJ6 34240737
    605780 7b23:A (2.15) BS01 dna ? GO:0003677 ... N/A 34417623
    605781 7b23:A (2.15) BS02 dna ? GO:0003677 ... N/A 34417623
    605782 7b23:A (2.15) BS03 CO ? GO:0003677 ... N/A 34417623
    605783 7b23:A (2.15) BS04 CO ? GO:0003677 ... N/A 34417623
    605784 7b23:B (2.15) BS01 dna ? GO:0003677 ... N/A 34417623
    605785 7b23:B (2.15) BS02 dna ? GO:0003677 ... N/A 34417623
    605786 7b23:B (2.15) BS03 CO ? GO:0003677 ... N/A 34417623
    605787 7b23:B (2.15) BS04 CO ? GO:0003677 ... N/A 34417623
    605788 7b23:C (2.15) BS01 dna ? GO:0003677 ... N/A 34417623
    605789 7b23:C (2.15) BS02 dna ? GO:0003677 ... N/A 34417623
    605790 7b23:C (2.15) BS03 CO ? GO:0003677 ... N/A 34417623
    605791 7b23:C (2.15) BS04 CO ? GO:0003677 ... N/A 34417623
    605792 7b23:D (2.15) BS01 dna ? GO:0003677 ... N/A 34417623
    605793 7b23:D (2.15) BS02 dna ? GO:0003677 ... N/A 34417623
    605794 7b23:D (2.15) BS03 CO ? GO:0003677 ... N/A 34417623
    605795 7b23:D (2.15) BS04 CO ? GO:0003677 ... N/A 34417623
    605796 7b23:aa (2.15) BS01 CO ? GO:0003677 ... N/A 34417623
    605797 7b23:dd (2.15) BS01 CO ? GO:0003677 ... N/A 34417623
    605798 7b24:A (2.05) BS01 dna ? GO:0003677 ... N/A 34417623
    605799 7b24:A (2.05) BS02 dna ? GO:0003677 ... N/A 34417623
    605800 7b24:A (2.05) BS03 CO ? GO:0003677 ... N/A 34417623

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).