SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    606401 7b6v:III (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    606402 7b6v:III (1.798) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 N/A
    606403 7b6v:III (1.798) BS03 SIA ? GO:0005198 ... A0A0E3ZCF3 N/A
    606404 7b6v:JJJ (1.798) BS01 GLA ? GO:0005198 ... A0A0E3ZCF3 N/A
    606405 7b6v:JJJ (1.798) BS02 MG ? GO:0005198 ... A0A0E3ZCF3 N/A
    606406 7b6w:AAA (2.873) BS01 T0B N/A GO:0004930 ... N/A 35046410
    606407 7b6w:AAA (2.873) BS02 T0B N/A GO:0004930 ... N/A 35046410
    606408 7b74:AAA (1.85) BS01 4IR 1.15.1.1 GO:0009374 ... P0A609
    P22629
    36924204
    606409 7b74:BBB (1.85) BS01 4IR 1.15.1.1 GO:0009374 ... P0A609
    P22629
    36924204
    606410 7b74:CCC (1.85) BS01 4IR 1.15.1.1 GO:0009374 ... P0A609
    P22629
    36924204
    606411 7b74:DDD (1.85) BS01 4IR 1.15.1.1 GO:0009374 ... P0A609
    P22629
    36924204
    606412 7b77:A (1.6) BS01 T0W 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35142215
    606413 7b7b:A (1.4) BS01 T1B ? N/A Q9UIF9 36105334
    606414 7b7c:A (1.55) BS01 FUL ? GO:0046872 ... Q7N8J0 33765407
    606415 7b7c:A (1.55) BS02 FUC ? GO:0046872 ... Q7N8J0 33765407
    606416 7b7c:A (1.55) BS03 FUL ? GO:0046872 ... Q7N8J0 33765407
    606417 7b7c:A (1.55) BS04 FUC ? GO:0046872 ... Q7N8J0 33765407
    606418 7b7c:A (1.55) BS05 FUL ? GO:0046872 ... Q7N8J0 33765407
    606419 7b7c:A (1.55) BS06 FUL ? GO:0046872 ... Q7N8J0 33765407
    606420 7b7d:A (3.3) BS01 rna ? GO:0000054 ... P05750 N/A
    606421 7b7d:B (3.3) BS01 rna ? GO:0000028 ... P26783 N/A
    606422 7b7d:C (3.3) BS01 rna ? N/A Q08745 N/A
    606423 7b7d:D (3.3) BS01 rna ? GO:0003735 ... P48589 N/A
    606424 7b7d:E (3.3) BS01 rna ? GO:0003723 ... Q01855 N/A
    606425 7b7d:EF (3.3) BS01 rna 3.6.4.- GO:0002182 ... P16521 N/A
    606426 7b7d:EF (3.3) BS02 ATP 3.6.4.- GO:0002182 ... P16521 N/A
    606427 7b7d:EF (3.3) BS03 ATP 3.6.4.- GO:0002182 ... P16521 N/A
    606428 7b7d:F (3.3) BS01 rna ? GO:0000462 ... P0CX51 N/A
    606429 7b7d:G (3.3) BS01 rna ? GO:0000028 ... P14127 N/A
    606430 7b7d:H (3.3) BS01 rna ? GO:0000054 ... P0CX55 N/A
    606431 7b7d:I (3.3) BS01 rna ? GO:0000028 ... P07280 N/A
    606432 7b7d:J (3.3) BS01 rna ? GO:0003723 ... P38701 N/A
    606433 7b7d:K (3.3) BS01 rna ? N/A Q3E792 N/A
    606434 7b7d:L (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    606435 7b7d:LD (3.3) BS01 rna ? GO:0002181 ... P0CX45 N/A
    606436 7b7d:LD (3.3) BS02 rna ? GO:0002181 ... P0CX45 N/A
    606437 7b7d:LE (3.3) BS01 rna ? GO:0000027 ... P14126 N/A
    606438 7b7d:LF (3.3) BS01 rna ? GO:0002181 ... P10664 N/A
    606439 7b7d:LF (3.3) BS02 rna ? GO:0002181 ... P10664 N/A
    606440 7b7d:LG (3.3) BS01 rna ? GO:0000027 ... P26321 N/A
    606441 7b7d:LG (3.3) BS02 rna ? GO:0000027 ... P26321 N/A
    606442 7b7d:LH (3.3) BS01 rna ? GO:0000027 ... P05739 N/A
    606443 7b7d:LI (3.3) BS01 rna ? GO:0000463 ... P05737 N/A
    606444 7b7d:LI (3.3) BS02 rna ? GO:0000463 ... P05737 N/A
    606445 7b7d:LJ (3.3) BS01 rna ? GO:0000470 ... P17076 N/A
    606446 7b7d:LJ (3.3) BS02 rna ? GO:0000470 ... P17076 N/A
    606447 7b7d:LK (3.3) BS01 rna ? GO:0002181 ... P05738 N/A
    606448 7b7d:LL (3.3) BS01 rna ? GO:0000027 ... P41805 N/A
    606449 7b7d:LL (3.3) BS02 rna ? GO:0000027 ... P41805 N/A
    606450 7b7d:LM (3.3) BS01 rna ? GO:0000027 ... Q3E757 N/A
    606451 7b7d:LM (3.3) BS02 rna ? GO:0000027 ... Q3E757 N/A
    606452 7b7d:LM (3.3) BS03 rna ? GO:0000027 ... Q3E757 N/A
    606453 7b7d:LN (3.3) BS01 rna ? GO:0002181 ... Q12690 N/A
    606454 7b7d:LN (3.3) BS02 rna ? GO:0002181 ... Q12690 N/A
    606455 7b7d:LO (3.3) BS01 rna ? GO:0000027 ... P36105 N/A
    606456 7b7d:LP (3.3) BS01 rna ? GO:0002181 ... P05748 N/A
    606457 7b7d:LP (3.3) BS02 rna ? GO:0002181 ... P05748 N/A
    606458 7b7d:LQ (3.3) BS01 rna ? GO:0000470 ... P26784 N/A
    606459 7b7d:LR (3.3) BS01 rna ? GO:0000448 ... P05740 N/A
    606460 7b7d:LR (3.3) BS02 rna ? GO:0000448 ... P05740 N/A
    606461 7b7d:LS (3.3) BS01 rna ? GO:0003735 ... P04449 N/A
    606462 7b7d:LT (3.3) BS01 rna ? GO:0003735 ... P04456 N/A
    606463 7b7d:LT (3.3) BS02 rna ? GO:0003735 ... P04456 N/A
    606464 7b7d:LU (3.3) BS01 rna ? GO:0002181 ... P05743 N/A
    606465 7b7d:LU (3.3) BS02 rna ? GO:0002181 ... P05743 N/A
    606466 7b7d:LV (3.3) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    606467 7b7d:LW (3.3) BS01 rna ? GO:0002181 ... P02406 N/A
    606468 7b7d:LX (3.3) BS01 rna ? GO:0002181 ... P05747 N/A
    606469 7b7d:LY (3.3) BS01 rna ? GO:0002181 ... P14120 N/A
    606470 7b7d:LZ (3.3) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    606471 7b7d:La (3.3) BS01 rna ? GO:0002181 ... P38061 N/A
    606472 7b7d:Lb (3.3) BS01 rna ? GO:0000027 ... P05744 N/A
    606473 7b7d:Lc (3.3) BS01 rna ? GO:0002181 ... P87262 N/A
    606474 7b7d:Ld (3.3) BS01 rna ? GO:0000463 ... P0CX84 N/A
    606475 7b7d:Ld (3.3) BS02 rna ? GO:0000463 ... P0CX84 N/A
    606476 7b7d:Le (3.3) BS01 rna ? GO:0002181 ... P05745 N/A
    606477 7b7d:Lf (3.3) BS01 rna ? GO:0000448 ... P49166 N/A
    606478 7b7d:Lf (3.3) BS02 rna ? GO:0000448 ... P49166 N/A
    606479 7b7d:Lg (3.3) BS01 rna ? GO:0002181 ... P49167 N/A
    606480 7b7d:Lh (3.3) BS01 rna ? GO:0002181 ... P04650 N/A
    606481 7b7d:Lh (3.3) BS02 rna ? GO:0002181 ... P04650 N/A
    606482 7b7d:Li (3.3) BS01 rna ? GO:0003735 ... P0CH08 N/A
    606483 7b7d:Lk (3.3) BS01 rna ? GO:0002181 ... P0CX27 N/A
    606484 7b7d:Ll (3.3) BS01 rna ? GO:0002181 ... P0CX25 N/A
    606485 7b7d:Lm (3.3) BS01 rna ? GO:0002181 ... P0CX49 N/A
    606486 7b7d:Ln (3.3) BS01 rna ? GO:0002181 ... P0CX82 N/A
    606487 7b7d:Ln (3.3) BS02 rna ? GO:0002181 ... P0CX82 N/A
    606488 7b7d:Lo (3.3) BS01 rna ? GO:0002181 ... P0CX23 N/A
    606489 7b7d:Lo (3.3) BS02 rna ? GO:0002181 ... P0CX23 N/A
    606490 7b7d:Lp (3.3) BS01 rna ? GO:0002181 ... Q02753 N/A
    606491 7b7d:Lp (3.3) BS02 rna ? GO:0002181 ... Q02753 N/A
    606492 7b7d:Lq (3.3) BS01 rna ? GO:0003735 ... P05749 N/A
    606493 7b7d:Lr (3.3) BS01 rna ? GO:0002181 ... P0CX41 N/A
    606494 7b7d:Lr (3.3) BS02 rna ? GO:0002181 ... P0CX41 N/A
    606495 7b7d:M (3.3) BS01 rna ? GO:0002181 ... P41057 N/A
    606496 7b7d:N (3.3) BS01 rna ? GO:0003735 ... P05759 N/A
    606497 7b7d:O (3.3) BS01 rna ? GO:0001965 ... P38011 N/A
    606498 7b7d:P (3.3) BS01 rna ? GO:0003735 ... P32905 N/A
    606499 7b7d:Q (3.3) BS01 rna ? GO:0000462 ... P33442 N/A
    606500 7b7d:R (3.3) BS01 rna ? GO:0003723 ... P25443 N/A
    606501 7b7d:S (3.3) BS01 rna ? GO:0002181 ... P0CX35 N/A
    606502 7b7d:T (3.3) BS01 rna ? GO:0000462 ... P0CX37 N/A
    606503 7b7d:U (3.3) BS01 rna ? GO:0002181 ... P26786 N/A
    606504 7b7d:V (3.3) BS01 rna ? GO:0000462 ... P0CX39 N/A
    606505 7b7d:V (3.3) BS02 rna ? GO:0000462 ... P0CX39 N/A
    606506 7b7d:W (3.3) BS01 rna ? GO:0000462 ... O13516 N/A
    606507 7b7d:X (3.3) BS01 rna ? GO:0000028 ... P0CX47 N/A
    606508 7b7d:Y (3.3) BS01 rna ? GO:0000462 ... P05756 N/A
    606509 7b7d:Y (3.3) BS02 rna ? GO:0000462 ... P05756 N/A
    606510 7b7d:Z (3.3) BS01 rna ? GO:0000028 ... P39516 N/A
    606511 7b7d:b (3.3) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    606512 7b7d:c (3.3) BS01 rna ? GO:0000462 ... P0CX29 N/A
    606513 7b7d:d (3.3) BS01 rna ? GO:0000462 ... P0CX31 N/A
    606514 7b7d:e (3.3) BS01 rna ? GO:0003735 ... P39939 N/A
    606515 7b7d:f (3.3) BS01 rna ? GO:0000028 ... P35997 N/A
    606516 7b7d:g (3.3) BS01 rna ? GO:0002181 ... P0CX33 N/A
    606517 7b7f:A (1.6) BS01 FUC ? GO:0046872 ... Q7N8J0 33765407
    606518 7b7f:A (1.6) BS02 FUL ? GO:0046872 ... Q7N8J0 33765407
    606519 7b7f:A (1.6) BS03 FUL ? GO:0046872 ... Q7N8J0 33765407
    606520 7b7f:A (1.6) BS04 FUC ? GO:0046872 ... Q7N8J0 33765407
    606521 7b7f:A (1.6) BS05 FUC ? GO:0046872 ... Q7N8J0 33765407
    606522 7b7f:A (1.6) BS06 FUL ? GO:0046872 ... Q7N8J0 33765407
    606523 7b7f:A (1.6) BS07 FUL ? GO:0046872 ... Q7N8J0 33765407
    606524 7b7f:A (1.6) BS08 FUC ? GO:0046872 ... Q7N8J0 33765407
    606525 7b7g:A (1.428) BS01 T1B ? N/A Q9UIF9 36105334
    606526 7b7h:A (1.8) BS01 GCU ? GO:0046872 ... B1ZMF4 35304453
    606527 7b7h:A (1.8) BS02 GLY ? GO:0046872 ... B1ZMF4 35304453
    606528 7b7h:A (1.8) BS03 GLY ? GO:0046872 ... B1ZMF4 35304453
    606529 7b7h:A (1.8) BS04 GLY ? GO:0046872 ... B1ZMF4 35304453
    606530 7b7i:A (1.15) BS01 T1H ? N/A Q9UIF9 36105334
    606531 7b7p:A (2.26) BS01 MG ? GO:0009986 ... A0A0B7GP99 34031252
    606532 7b7p:B (2.26) BS01 MG ? GO:0009986 ... A0A0B7GP99 34031252
    606533 7b7q:A (1.35) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606534 7b7q:A (1.35) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606535 7b7q:A (1.35) BS03 T2N 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606536 7b7q:B (1.35) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606537 7b7q:B (1.35) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606538 7b7q:B (1.35) BS03 T2N 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606539 7b7r:A (1.7) BS01 ANP 2.7.12.2 GO:0004672 ... Q02750 33603979
    606540 7b7r:A (1.7) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 33603979
    606541 7b7r:A (1.7) BS03 T1K 2.7.12.2 GO:0004672 ... Q02750 33603979
    606542 7b7r:B (1.7) BS01 ANP 2.7.12.2 GO:0004672 ... Q02750 33603979
    606543 7b7r:B (1.7) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 33603979
    606544 7b7r:B (1.7) BS03 T1K 2.7.12.2 GO:0004672 ... Q02750 33603979
    606545 7b7s:A (2.54) BS01 T1T 2.7.11.22 GO:0000082 ... P24941 34288692
    606546 7b7s:C (2.54) BS01 T1T 2.7.11.22 GO:0000082 ... P24941 34288692
    606547 7b7t:A (1.38) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606548 7b7t:A (1.38) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606549 7b7t:A (1.38) BS03 SF3 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606550 7b7t:B (1.38) BS01 FES 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606551 7b7t:B (1.38) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606552 7b7t:B (1.38) BS03 SF3 1.2.7.4 GO:0003824 ... Q3AG28 35133707
    606553 7b7u:C (2.8) BS01 ZN ? GO:0000428 ... I3LCH3 34021257
    606554 7b7u:I (2.8) BS01 ZN ? GO:0000428 ... P60899 34021257
    606555 7b7u:L (2.8) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 34021257
    606556 7b7u:M (2.8) BS01 ZN 3.1.3.16 GO:0004721 ... Q8IXW5 34021257
    606557 7b7v:A (1.6) BS01 4DG 3.6.1.9 GO:0000278 ... Q9NV35 34234136
    606558 7b7v:A (1.6) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34234136
    606559 7b7v:B (1.6) BS01 4DG 3.6.1.9 GO:0000278 ... Q9NV35 34234136
    606560 7b7v:B (1.6) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 34234136
    606561 7b7w:A (1.6) BS01 JGA 3.1.1.98 GO:0016787 ... Q6P988 N/A
    606562 7b7x:A (2.41) BS01 WKA 3.1.1.98 GO:0016787 ... Q6P988 N/A
    606563 7b7y:A (1.48) BS01 JFP 3.1.1.98 GO:0016787 ... Q6P988 N/A
    606564 7b7y:A (1.48) BS02 JFP 3.1.1.98 GO:0016787 ... Q6P988 N/A
    606565 7b7z:A (1.7) BS01 AMP 2.7.7.108
    3.1.4.-
    N/A Q9BVA6 34408154
    606566 7b80:A (1.87) BS01 AMP 2.7.7.108
    3.1.4.-
    N/A Q9BVA6 34408154
    606567 7b81:A (2.092) BS01 NAD ? GO:0000166 ... C1DMX5 33482017
    606568 7b81:B (2.092) BS01 NAD ? GO:0000166 ... C1DMX5 33482017
    606569 7b82:A (1.25) BS01 T3H ? N/A Q9UIF9 36105334
    606570 7b83:A (1.8) BS01 PK8 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 33811162
    606571 7b84:A (1.36) BS01 JFS 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606572 7b84:A (1.36) BS02 JFS 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606573 7b85:A (2.5) BS01 R28 2.7.10.1 GO:0004672 ... P00533 35486541
    606574 7b86:A (1.4) BS01 AW7 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606575 7b87:A (1.58) BS01 JFV 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606576 7b88:A (2.38) BS01 peptide ? GO:0003677 ... P19793 33793232
    606577 7b88:A (2.38) BS02 T2K ? GO:0003677 ... P19793 33793232
    606578 7b89:A (1.84) BS01 T1Z 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606579 7b8a:A (1.23) BS01 AWP 3.1.1.98 GO:0016787 ... Q6P988 N/A
    606580 7b8c:A (1.43) BS01 GRV 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606581 7b8d:A (1.62) BS01 SFY 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606582 7b8e:A (2.23) BS01 CA 3.1.1.7 GO:0001507 ... P04058 33686648
    606583 7b8e:A (2.23) BS02 ZN 3.1.1.7 GO:0001507 ... P04058 33686648
    606584 7b8f:A (1.62) BS01 RYM 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606585 7b8g:A (1.58) BS01 MJW 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606586 7b8h:A (1.34) BS01 IDS 2.7.11.1 GO:0004672 ... P68400 33571828
    606587 7b8h:A (1.34) BS02 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    606588 7b8h:A (1.34) BS03 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    606589 7b8h:A (1.34) BS04 NIO 2.7.11.1 GO:0004672 ... P68400 33571828
    606590 7b8i:A (2.55) BS01 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    606591 7b8i:B (2.55) BS01 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    606592 7b8j:A (1.75) BS01 BP4 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606593 7b8k:A (1.6) BS01 AXV 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606594 7b8l:A (1.45) BS01 AY4 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606595 7b8m:A (1.48) BS01 GQM 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606596 7b8n:A (1.56) BS01 T2E 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606597 7b8o:A (1.5) BS01 T1W 3.1.1.98 GO:0016787 ... Q6P988 35731924
    606598 7b8r:C (2.1) BS01 DXT ? GO:0016020 ... P31224 34824229
    606599 7b8r:C (2.1) BS02 DXT ? GO:0016020 ... P31224 34824229
    606600 7b8s:C (2.3) BS01 FUA ? GO:0016020 ... P31224 34824229

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).