SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    608201 7bke:a (2.8) BS03 SF4 1.8.-.- GO:0016491 ... Q2FKZ1 34516836
    608202 7bke:a (2.8) BS04 SF4 1.8.-.- GO:0016491 ... Q2FKZ1 34516836
    608203 7bke:a (2.8) BS05 SF4 1.8.-.- GO:0016491 ... Q2FKZ1 34516836
    608204 7bke:a (2.8) BS06 SF4 1.8.-.- GO:0016491 ... Q2FKZ1 34516836
    608205 7bke:a (2.8) BS07 SF4 1.8.-.- GO:0016491 ... Q2FKZ1 34516836
    608206 7bke:b (2.8) BS01 9S8 ? GO:0015948 ... Q2FKZ2 34516836
    608207 7bke:b (2.8) BS02 9S8 ? GO:0015948 ... Q2FKZ2 34516836
    608208 7bke:c (2.8) BS01 SF4 ? GO:0005886 ... Q2FKZ3 34516836
    608209 7bke:c (2.8) BS02 SF4 ? GO:0005886 ... Q2FKZ3 34516836
    608210 7bkg:A (2.326) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468 BindingDB: IC50=35300nM
    608211 7bkg:A (2.326) BS02 U0Z 2.1.1.1 GO:0005737 ... P40261 33668468
    608212 7bkg:B (2.326) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468 BindingDB: IC50=35300nM
    608213 7bkg:B (2.326) BS02 U0Z 2.1.1.1 GO:0005737 ... P40261 33668468
    608214 7bkg:C (2.326) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468 BindingDB: IC50=35300nM
    608215 7bkg:C (2.326) BS02 U0Z 2.1.1.1 GO:0005737 ... P40261 33668468
    608216 7bkg:D (2.326) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468 BindingDB: IC50=35300nM
    608217 7bkg:D (2.326) BS02 U0Z 2.1.1.1 GO:0005737 ... P40261 33668468
    608218 7bkh:A (1.4) BS01 peptide ? GO:0000122 ... P31947 34076416
    608219 7bkh:A (1.4) BS02 U1B ? GO:0000122 ... P31947 34076416
    608220 7bkh:A (1.4) BS03 U1B ? GO:0000122 ... P31947 34076416
    608221 7bkn:A (2.74) BS01 ADE 2.7.11.1 GO:0000077 ... O14757 34184879
    608222 7bko:A (2.3) BS01 TVW 2.7.11.1 GO:0000077 ... O14757 34184879
    608223 7bkp:A (2.8) BS01 rna 3.6.4.13 GO:0002376 ... Q8R5F7 34795277
    608224 7bkp:A (2.8) BS02 rna 3.6.4.13 GO:0002376 ... Q8R5F7 34795277
    608225 7bkp:A (2.8) BS03 ZN 3.6.4.13 GO:0002376 ... Q8R5F7 34795277
    608226 7bkp:A (2.8) BS04 ATP 3.6.4.13 GO:0002376 ... Q8R5F7 34795277
    608227 7bkq:A (3.4) BS01 rna 3.6.4.13 GO:0003677 ... Q8R5F7 34795277
    608228 7bkq:A (3.4) BS02 rna 3.6.4.13 GO:0003677 ... Q8R5F7 34795277
    608229 7bkq:A (3.4) BS03 ZN 3.6.4.13 GO:0003677 ... Q8R5F7 34795277
    608230 7bkq:A (3.4) BS04 ADP 3.6.4.13 GO:0003677 ... Q8R5F7 34795277
    608231 7bku:A (1.4) BS01 PHN 3.4.23.22 GO:0004190 ... P11838 N/A
    608232 7bkv:A (1.24) BS01 U1Q 3.4.23.22 GO:0004190 ... P11838 N/A
    608233 7bkw:A (1.43) BS01 U1E 3.4.23.22 GO:0004190 ... P11838 N/A
    608234 7bkx:AAA (2.35) BS01 PAM ? GO:0046872 ... Q6SVB5 34958847
    608235 7bkx:AAA (2.35) BS02 ZN ? GO:0046872 ... Q6SVB5 34958847
    608236 7bkx:AAA (2.35) BS03 ZN ? GO:0046872 ... Q6SVB5 34958847
    608237 7bkx:AAA (2.35) BS04 ZN ? GO:0046872 ... Q6SVB5 34958847
    608238 7bky:A (1.9) BS01 U1E 3.4.23.22 GO:0004190 ... P11838 N/A
    608239 7bl1:DDD (9.8) BS01 GTP 3.6.5.2 GO:0003924 ... P20339 33692360
    608240 7bl1:DDD (9.8) BS02 MG 3.6.5.2 GO:0003924 ... P20339 33692360
    608241 7bl2:0 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 33639093
    608242 7bl2:1 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 33639093
    608243 7bl2:2 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 33639093
    608244 7bl2:9P1 (3.7) BS01 rna 3.6.5.- GO:0000027 ... P42641 33639093
    608245 7bl2:C (3.7) BS01 rna ? GO:0000027 ... P60422 33639093
    608246 7bl2:D (3.7) BS01 rna ? GO:0000027 ... P60438 33639093
    608247 7bl2:E (3.7) BS01 rna ? GO:0001070 ... P60723 33639093
    608248 7bl2:F (3.7) BS01 rna ? GO:0000027 ... P62399 33639093
    608249 7bl2:F (3.7) BS02 rna ? GO:0000027 ... P62399 33639093
    608250 7bl2:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 33639093
    608251 7bl2:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 33639093
    608252 7bl2:I (3.7) BS01 rna ? GO:0000027 ... P0A7J7 33639093
    608253 7bl2:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 33639093
    608254 7bl2:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 33639093
    608255 7bl2:L (3.7) BS01 rna ? GO:0002181 ... P02413 33639093
    608256 7bl2:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 33639093
    608257 7bl2:O (3.7) BS01 rna ? GO:0002181 ... P0C018 33639093
    608258 7bl2:O (3.7) BS02 rna ? GO:0002181 ... P0C018 33639093
    608259 7bl2:P (3.7) BS01 rna ? GO:0000027 ... P0A7K6 33639093
    608260 7bl2:Q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 33639093
    608261 7bl2:R (3.7) BS01 rna ? GO:0002181 ... P0AG48 33639093
    608262 7bl2:S (3.7) BS01 rna ? GO:0002181 ... P61175 33639093
    608263 7bl2:T (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 33639093
    608264 7bl2:U (3.7) BS01 rna ? GO:0000027 ... P60624 33639093
    608265 7bl2:V (3.7) BS01 rna ? GO:0000027 ... P68919 33639093
    608266 7bl2:W (3.7) BS01 rna ? GO:0000027 ... P0A7L8 33639093
    608267 7bl2:W (3.7) BS02 rna ? GO:0000027 ... P0A7L8 33639093
    608268 7bl2:X (3.7) BS01 rna ? GO:0000027 ... P0A7M2 33639093
    608269 7bl2:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 33639093
    608270 7bl2:Z (3.7) BS01 rna ? GO:0000027 ... P0AG51 33639093
    608271 7bl2:Z (3.7) BS02 rna ? GO:0000027 ... P0AG51 33639093
    608272 7bl2:b (3.7) BS01 rna ? GO:0002181 ... P0A7M9 33639093
    608273 7bl2:b (3.7) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    608274 7bl3:0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 33639093
    608275 7bl3:1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 33639093
    608276 7bl3:2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 33639093
    608277 7bl3:9P (3.5) BS01 rna 3.6.5.- GO:0000027 ... P42641 33639093
    608278 7bl3:C (3.5) BS01 rna ? GO:0000027 ... P60422 33639093
    608279 7bl3:D (3.5) BS01 rna ? GO:0000027 ... P60438 33639093
    608280 7bl3:E (3.5) BS01 rna ? GO:0001070 ... P60723 33639093
    608281 7bl3:F (3.5) BS01 rna ? GO:0000027 ... P62399 33639093
    608282 7bl3:F (3.5) BS02 rna ? GO:0000027 ... P62399 33639093
    608283 7bl3:G (3.5) BS01 rna ? GO:0000027 ... P0AG55 33639093
    608284 7bl3:H (3.5) BS01 rna ? GO:0002181 ... P0A7R1 33639093
    608285 7bl3:I (3.5) BS01 rna ? GO:0000027 ... P0A7J7 33639093
    608286 7bl3:J (3.5) BS01 rna ? GO:0002181 ... P0AA10 33639093
    608287 7bl3:K (3.5) BS01 rna ? GO:0002181 ... P0ADY3 33639093
    608288 7bl3:L (3.5) BS01 rna ? GO:0002181 ... P02413 33639093
    608289 7bl3:N (3.5) BS01 rna ? GO:0000027 ... P0AG44 33639093
    608290 7bl3:O (3.5) BS01 rna ? GO:0002181 ... P0C018 33639093
    608291 7bl3:O (3.5) BS02 rna ? GO:0002181 ... P0C018 33639093
    608292 7bl3:P (3.5) BS01 rna ? GO:0000027 ... P0A7K6 33639093
    608293 7bl3:Q (3.5) BS01 rna ? GO:0000027 ... P0A7L3 33639093
    608294 7bl3:R (3.5) BS01 rna ? GO:0002181 ... P0AG48 33639093
    608295 7bl3:S (3.5) BS01 rna ? GO:0002181 ... P61175 33639093
    608296 7bl3:T (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 33639093
    608297 7bl3:U (3.5) BS01 rna ? GO:0000027 ... P60624 33639093
    608298 7bl3:V (3.5) BS01 rna ? GO:0000027 ... P68919 33639093
    608299 7bl3:W (3.5) BS01 rna ? GO:0000027 ... P0A7L8 33639093
    608300 7bl3:W (3.5) BS02 rna ? GO:0000027 ... P0A7L8 33639093
    608301 7bl3:X (3.5) BS01 rna ? GO:0000027 ... P0A7M2 33639093
    608302 7bl3:Y (3.5) BS01 rna ? GO:0000027 ... P0A7M6 33639093
    608303 7bl3:Z (3.5) BS01 rna ? GO:0000027 ... P0AG51 33639093
    608304 7bl3:Z (3.5) BS02 rna ? GO:0000027 ... P0AG51 33639093
    608305 7bl3:b (3.5) BS01 rna ? GO:0002181 ... P0A7M9 33639093
    608306 7bl4:0 (2.4) BS01 rna ? GO:0000027 ... P0A7N4 33639093
    608307 7bl4:1 (2.4) BS01 rna ? GO:0000027 ... P0A7N9 33639093
    608308 7bl4:2 (2.4) BS01 rna ? GO:0002181 ... P0A7P5 33639093
    608309 7bl4:3 (2.4) BS01 rna ? GO:0002181 ... P0A7Q1 33639093
    608310 7bl4:9 (2.4) BS01 rna 3.6.5.- GO:0000027 ... P42641 33639093
    608311 7bl4:9 (2.4) BS02 GNP 3.6.5.- GO:0000027 ... P42641 33639093
    608312 7bl4:C (2.4) BS01 rna ? GO:0000027 ... P60422 33639093
    608313 7bl4:D (2.4) BS01 rna ? GO:0000027 ... P60438 33639093
    608314 7bl4:E (2.4) BS01 rna ? GO:0001070 ... P60723 33639093
    608315 7bl4:F (2.4) BS01 rna ? GO:0000027 ... P62399 33639093
    608316 7bl4:F (2.4) BS02 rna ? GO:0000027 ... P62399 33639093
    608317 7bl4:G (2.4) BS01 rna ? GO:0000027 ... P0AG55 33639093
    608318 7bl4:H (2.4) BS01 rna ? GO:0002181 ... P0A7R1 33639093
    608319 7bl4:J (2.4) BS01 rna ? GO:0002181 ... P0AA10 33639093
    608320 7bl4:K (2.4) BS01 rna ? GO:0002181 ... P0ADY3 33639093
    608321 7bl4:L (2.4) BS01 rna ? GO:0002181 ... P02413 33639093
    608322 7bl4:M (2.4) BS01 rna ? GO:0000027 ... P0ADY7 33639093
    608323 7bl4:M (2.4) BS02 rna ? GO:0000027 ... P0ADY7 33639093
    608324 7bl4:N (2.4) BS01 rna ? GO:0000027 ... P0AG44 33639093
    608325 7bl4:O (2.4) BS01 rna ? GO:0002181 ... P0C018 33639093
    608326 7bl4:O (2.4) BS02 rna ? GO:0002181 ... P0C018 33639093
    608327 7bl4:P (2.4) BS01 rna ? GO:0000027 ... P0A7K6 33639093
    608328 7bl4:Q (2.4) BS01 rna ? GO:0000027 ... P0A7L3 33639093
    608329 7bl4:R (2.4) BS01 rna ? GO:0002181 ... P0AG48 33639093
    608330 7bl4:S (2.4) BS01 rna ? GO:0002181 ... P61175 33639093
    608331 7bl4:T (2.4) BS01 rna ? GO:0000027 ... P0ADZ0 33639093
    608332 7bl4:U (2.4) BS01 rna ? GO:0000027 ... P60624 33639093
    608333 7bl4:V (2.4) BS01 rna ? GO:0000027 ... P68919 33639093
    608334 7bl4:V (2.4) BS02 rna ? GO:0000027 ... P68919 33639093
    608335 7bl4:W (2.4) BS01 rna ? GO:0000027 ... P0A7L8 33639093
    608336 7bl4:W (2.4) BS02 rna ? GO:0000027 ... P0A7L8 33639093
    608337 7bl4:X (2.4) BS01 rna ? GO:0000027 ... P0A7M2 33639093
    608338 7bl4:Y (2.4) BS01 rna ? GO:0000027 ... P0A7M6 33639093
    608339 7bl4:Z (2.4) BS01 rna ? GO:0000027 ... P0AG51 33639093
    608340 7bl4:Z (2.4) BS02 rna ? GO:0000027 ... P0AG51 33639093
    608341 7bl4:d (2.4) BS01 rna ? GO:0002181 ... P0A7M9 33639093
    608342 7bl4:d (2.4) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    608343 7bl4:g (2.4) BS01 rna ? GO:0002181 ... P0A7Q6 33639093
    608344 7bl4:g (2.4) BS02 ZN ? GO:0002181 ... P0A7Q6 33639093
    608345 7bl5:0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 33639093
    608346 7bl5:1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 33639093
    608347 7bl5:2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 33639093
    608348 7bl5:7 (3.3) BS01 rna 5.4.99.23 GO:0000027 ... P33643 33639093
    608349 7bl5:8 (3.3) BS01 rna ? GO:0005737 ... P0A8X0 33639093
    608350 7bl5:9 (3.3) BS01 rna 3.6.5.- GO:0000027 ... P42641 33639093
    608351 7bl5:9 (3.3) BS02 GDP 3.6.5.- GO:0000027 ... P42641 33639093
    608352 7bl5:9 (3.3) BS03 MG 3.6.5.- GO:0000027 ... P42641 33639093
    608353 7bl5:C (3.3) BS01 rna ? GO:0000027 ... P60422 33639093
    608354 7bl5:D (3.3) BS01 rna ? GO:0000027 ... P60438 33639093
    608355 7bl5:E (3.3) BS01 rna ? GO:0001070 ... P60723 33639093
    608356 7bl5:F (3.3) BS01 rna ? GO:0000027 ... P62399 33639093
    608357 7bl5:F (3.3) BS02 rna ? GO:0000027 ... P62399 33639093
    608358 7bl5:G (3.3) BS01 rna ? GO:0000027 ... P0AG55 33639093
    608359 7bl5:H (3.3) BS01 rna ? GO:0002181 ... P0A7R1 33639093
    608360 7bl5:I (3.3) BS01 rna ? GO:0000027 ... P0A7J7 33639093
    608361 7bl5:J (3.3) BS01 rna ? GO:0002181 ... P0AA10 33639093
    608362 7bl5:K (3.3) BS01 rna ? GO:0002181 ... P0ADY3 33639093
    608363 7bl5:L (3.3) BS01 rna ? GO:0002181 ... P02413 33639093
    608364 7bl5:M (3.3) BS01 rna ? GO:0000027 ... P0ADY7 33639093
    608365 7bl5:M (3.3) BS02 rna ? GO:0000027 ... P0ADY7 33639093
    608366 7bl5:N (3.3) BS01 rna ? GO:0000027 ... P0AG44 33639093
    608367 7bl5:O (3.3) BS01 rna ? GO:0002181 ... P0C018 33639093
    608368 7bl5:O (3.3) BS02 rna ? GO:0002181 ... P0C018 33639093
    608369 7bl5:P (3.3) BS01 rna ? GO:0000027 ... P0A7K6 33639093
    608370 7bl5:Q (3.3) BS01 rna ? GO:0000027 ... P0A7L3 33639093
    608371 7bl5:R (3.3) BS01 rna ? GO:0002181 ... P0AG48 33639093
    608372 7bl5:S (3.3) BS01 rna ? GO:0002181 ... P61175 33639093
    608373 7bl5:T (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 33639093
    608374 7bl5:U (3.3) BS01 rna ? GO:0000027 ... P60624 33639093
    608375 7bl5:V (3.3) BS01 rna ? GO:0000027 ... P68919 33639093
    608376 7bl5:W (3.3) BS01 rna ? GO:0000027 ... P0A7L8 33639093
    608377 7bl5:W (3.3) BS02 rna ? GO:0000027 ... P0A7L8 33639093
    608378 7bl5:X (3.3) BS01 rna ? GO:0000027 ... P0A7M2 33639093
    608379 7bl5:Y (3.3) BS01 rna ? GO:0000027 ... P0A7M6 33639093
    608380 7bl5:Z (3.3) BS01 rna ? GO:0000027 ... P0AG51 33639093
    608381 7bl5:Z (3.3) BS02 rna ? GO:0000027 ... P0AG51 33639093
    608382 7bl5:b (3.3) BS01 rna ? GO:0002181 ... P0A7M9 33639093
    608383 7bl5:b (3.3) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    608384 7bl5:e (3.3) BS01 rna ? GO:0002181 ... P0A7J3 33639093
    608385 7bl6:0 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 33639093
    608386 7bl6:1 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 33639093
    608387 7bl6:2 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 33639093
    608388 7bl6:3 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 33639093
    608389 7bl6:9 (4.0) BS01 rna 3.6.5.- GO:0000027 ... P42641 33639093
    608390 7bl6:9 (4.0) BS02 MG 3.6.5.- GO:0000027 ... P42641 33639093
    608391 7bl6:9 (4.0) BS03 GNP 3.6.5.- GO:0000027 ... P42641 33639093
    608392 7bl6:C (4.0) BS01 rna ? GO:0000027 ... P60422 33639093
    608393 7bl6:D (4.0) BS01 rna ? GO:0000027 ... P60438 33639093
    608394 7bl6:E (4.0) BS01 rna ? GO:0001070 ... P60723 33639093
    608395 7bl6:F (4.0) BS01 rna ? GO:0000027 ... P62399 33639093
    608396 7bl6:F (4.0) BS02 rna ? GO:0000027 ... P62399 33639093
    608397 7bl6:G (4.0) BS01 rna ? GO:0000027 ... P0AG55 33639093
    608398 7bl6:H (4.0) BS01 rna ? GO:0002181 ... P0A7R1 33639093
    608399 7bl6:J (4.0) BS01 rna ? GO:0002181 ... P0AA10 33639093
    608400 7bl6:K (4.0) BS01 rna ? GO:0002181 ... P0ADY3 33639093

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).