SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    608401 7bl6:L (4.0) BS01 rna ? GO:0002181 ... P02413 33639093
    608402 7bl6:M (4.0) BS01 rna ? GO:0000027 ... P0ADY7 33639093
    608403 7bl6:M (4.0) BS02 rna ? GO:0000027 ... P0ADY7 33639093
    608404 7bl6:N (4.0) BS01 rna ? GO:0000027 ... P0AG44 33639093
    608405 7bl6:O (4.0) BS01 rna ? GO:0002181 ... P0C018 33639093
    608406 7bl6:O (4.0) BS02 rna ? GO:0002181 ... P0C018 33639093
    608407 7bl6:P (4.0) BS01 rna ? GO:0000027 ... P0A7K6 33639093
    608408 7bl6:Q (4.0) BS01 rna ? GO:0000027 ... P0A7L3 33639093
    608409 7bl6:R (4.0) BS01 rna ? GO:0002181 ... P0AG48 33639093
    608410 7bl6:S (4.0) BS01 rna ? GO:0002181 ... P61175 33639093
    608411 7bl6:T (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 33639093
    608412 7bl6:U (4.0) BS01 rna ? GO:0000027 ... P60624 33639093
    608413 7bl6:V (4.0) BS01 rna ? GO:0000027 ... P68919 33639093
    608414 7bl6:V (4.0) BS02 rna ? GO:0000027 ... P68919 33639093
    608415 7bl6:W (4.0) BS01 rna ? GO:0000027 ... P0A7L8 33639093
    608416 7bl6:W (4.0) BS02 rna ? GO:0000027 ... P0A7L8 33639093
    608417 7bl6:X (4.0) BS01 rna ? GO:0000027 ... P0A7M2 33639093
    608418 7bl6:Y (4.0) BS01 rna ? GO:0000027 ... P0A7M6 33639093
    608419 7bl6:Z (4.0) BS01 rna ? GO:0000027 ... P0AG51 33639093
    608420 7bl6:Z (4.0) BS02 rna ? GO:0000027 ... P0AG51 33639093
    608421 7bl6:d (4.0) BS01 rna ? GO:0002181 ... P0A7M9 33639093
    608422 7bl6:d (4.0) BS02 ZN ? GO:0002181 ... P0A7M9 33639093
    608423 7bl6:g (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 33639093
    608424 7bl6:g (4.0) BS02 ZN ? GO:0002181 ... P0A7Q6 33639093
    608425 7bl7:A (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608426 7bl7:B (3.33) BS01 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608427 7bl7:B (3.33) BS02 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608428 7bl7:C (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608429 7bl7:C (3.33) BS02 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608430 7bl7:C (3.33) BS03 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608431 7bl7:D (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608432 7bl7:D (3.33) BS02 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608433 7bl7:D (3.33) BS03 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608434 7bl7:E (3.33) BS01 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608435 7bl7:E (3.33) BS02 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608436 7bl7:F (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608437 7bl7:G (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608438 7bl7:H (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608439 7bl7:H (3.33) BS02 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608440 7bl7:I (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608441 7bl7:I (3.33) BS02 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608442 7bl7:I (3.33) BS03 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608443 7bl7:J (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608444 7bl7:J (3.33) BS02 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608445 7bl7:J (3.33) BS03 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608446 7bl7:K (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608447 7bl7:K (3.33) BS02 UDP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608448 7bl7:L (3.33) BS01 UTP 2.7.4.22 GO:0000287 ... P9WHK5 35152545
    608449 7bl8:A (2.5) BS01 U1Z ? N/A Q9UIF9 N/A
    608450 7bl9:A (1.3) BS01 3WQ ? N/A Q9UIF9 N/A
    608451 7bla:A (1.086) BS01 WCS ? N/A Q9UIF9 N/A
    608452 7blb:A (2.3) BS01 9ST ? N/A Q9UIF9 N/A
    608453 7blc:A (2.3) BS01 U2E ? N/A Q9UIF9 N/A
    608454 7blc:A (2.3) BS02 U2E ? N/A Q9UIF9 N/A
    608455 7bld:A (2.35) BS01 U2K ? N/A Q9UIF9 N/A
    608456 7bld:A (2.35) BS02 U2K ? N/A Q9UIF9 N/A
    608457 7ble:A (2.809) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468
    608458 7ble:A (2.809) BS02 U1W 2.1.1.1 GO:0005737 ... P40261 33668468
    608459 7ble:B (2.809) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468
    608460 7ble:B (2.809) BS02 U1W 2.1.1.1 GO:0005737 ... P40261 33668468
    608461 7ble:C (2.809) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468
    608462 7ble:C (2.809) BS02 U1W 2.1.1.1 GO:0005737 ... P40261 33668468
    608463 7ble:D (2.809) BS01 SAH 2.1.1.1 GO:0005737 ... P40261 33668468
    608464 7ble:D (2.809) BS02 U1W 2.1.1.1 GO:0005737 ... P40261 33668468
    608465 7blf:A (2.15) BS01 FMN ? GO:0000166 ... A0A384K246 N/A
    608466 7blf:B (2.15) BS01 FMN ? GO:0000166 ... A0A384K246 N/A
    608467 7blg:A (1.18) BS01 GAL ? N/A Q8A3D9 N/A
    608468 7blg:A (1.18) BS02 CA ? N/A Q8A3D9 N/A
    608469 7blh:AAAA (1.79) BS01 GAL ? N/A Q8A3D9 N/A
    608470 7blh:AAAA (1.79) BS02 CA ? N/A Q8A3D9 N/A
    608471 7bli:A (1.47) BS01 BEP 3.1.1.98 GO:0016787 ... Q6P988 N/A
    608472 7blj:A (1.76) BS01 GAL ? N/A Q8A3D9 N/A
    608473 7blj:A (1.76) BS02 CA ? N/A Q8A3D9 N/A
    608474 7blk:A (1.06) BS01 CA ? N/A Q8A3D9 N/A
    608475 7blo:F (9.5) BS01 peptide ? GO:0005515 ... O75436 33762348
    608476 7blo:G (9.5) BS01 peptide ? GO:0005515 ... O60493 33762348
    608477 7blo:G (9.5) BS02 PIB ? GO:0005515 ... O60493 33762348
    608478 7blo:J (9.5) BS01 peptide ? GO:0005515 ... O75436 33762348
    608479 7blo:L (9.5) BS01 peptide ? GO:0005515 ... O60493 33762348
    608480 7blo:L (9.5) BS02 PIB ? GO:0005515 ... O60493 33762348
    608481 7blq:F (9.2) BS01 peptide ? GO:0006886 ... G0S0E6 33762348
    608482 7blq:G (9.2) BS01 PIB ? GO:0032266 ... G0S0X3 33762348
    608483 7blq:J (9.2) BS01 peptide ? GO:0006886 ... G0S0E6 33762348
    608484 7blq:L (9.2) BS01 PIB ? GO:0032266 ... G0S0X3 33762348
    608485 7bls:A (1.19) BS01 U2Q 3.1.1.98 GO:0016787 ... Q6P988 N/A
    608486 7blt:A (1.2) BS01 U2T 3.1.1.98 GO:0016787 ... Q6P988 N/A
    608487 7blu:A (1.21) BS01 U2W 3.1.1.98 GO:0016787 ... Q6P988 N/A
    608488 7blv:A (2.099) BS01 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... P14336 35987382
    608489 7blv:A (2.099) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... P14336 35987382
    608490 7blw:A (1.45) BS01 AYR 3.1.1.98 GO:0016787 ... Q6P988 N/A
    608491 7blx:1 (3.15) BS01 C7Z ? GO:0009765 ... Q05093 N/A
    608492 7blx:1 (3.15) BS02 CLA ? GO:0009765 ... Q05093 N/A
    608493 7blx:1 (3.15) BS03 CLA ? GO:0009765 ... Q05093 N/A
    608494 7blx:1 (3.15) BS04 CLA ? GO:0009765 ... Q05093 N/A
    608495 7blx:1 (3.15) BS05 CLA ? GO:0009765 ... Q05093 N/A
    608496 7blx:1 (3.15) BS06 CLA ? GO:0009765 ... Q05093 N/A
    608497 7blx:1 (3.15) BS07 CLA ? GO:0009765 ... Q05093 N/A
    608498 7blx:1 (3.15) BS08 CHL ? GO:0009765 ... Q05093 N/A
    608499 7blx:1 (3.15) BS09 CLA ? GO:0009765 ... Q05093 N/A
    608500 7blx:1 (3.15) BS10 CLA ? GO:0009765 ... Q05093 N/A
    608501 7blx:1 (3.15) BS11 CLA ? GO:0009765 ... Q05093 N/A
    608502 7blx:1 (3.15) BS12 CLA ? GO:0009765 ... Q05093 N/A
    608503 7blx:1 (3.15) BS13 CHL ? GO:0009765 ... Q05093 N/A
    608504 7blx:3 (3.15) BS01 CLA ? GO:0009765 ... Q75VY9 N/A
    608505 7blx:3 (3.15) BS02 CLA ? GO:0009765 ... Q75VY9 N/A
    608506 7blx:3 (3.15) BS03 CLA ? GO:0009765 ... Q75VY9 N/A
    608507 7blx:3 (3.15) BS04 CLA ? GO:0009765 ... Q75VY9 N/A
    608508 7blx:3 (3.15) BS05 CLA ? GO:0009765 ... Q75VY9 N/A
    608509 7blx:3 (3.15) BS06 CLA ? GO:0009765 ... Q75VY9 N/A
    608510 7blx:3 (3.15) BS07 CLA ? GO:0009765 ... Q75VY9 N/A
    608511 7blx:3 (3.15) BS08 CLA ? GO:0009765 ... Q75VY9 N/A
    608512 7blx:3 (3.15) BS09 CLA ? GO:0009765 ... Q75VY9 N/A
    608513 7blx:3 (3.15) BS10 CLA ? GO:0009765 ... Q75VY9 N/A
    608514 7blx:3 (3.15) BS11 CLA ? GO:0009765 ... Q75VY9 N/A
    608515 7blx:3 (3.15) BS12 CLA ? GO:0009765 ... Q75VY9 N/A
    608516 7blx:3 (3.15) BS13 CLA ? GO:0009765 ... Q75VY9 N/A
    608517 7blx:3 (3.15) BS14 CHL ? GO:0009765 ... Q75VY9 N/A
    608518 7blx:3 (3.15) BS15 CLA ? GO:0009765 ... Q75VY9 N/A
    608519 7blx:3 (3.15) BS16 CLA ? GO:0009765 ... Q75VY9 N/A
    608520 7blx:3 (3.15) BS17 NKP ? GO:0009765 ... Q75VY9 N/A
    608521 7blx:3 (3.15) BS18 CLA ? GO:0009765 ... Q75VY9 N/A
    608522 7blx:3 (3.15) BS19 CLA ? GO:0009765 ... Q75VY9 N/A
    608523 7blx:4 (3.15) BS01 CHL ? GO:0009765 ... Q75VZ0 N/A
    608524 7blx:4 (3.15) BS02 CLA ? GO:0009765 ... Q75VZ0 N/A
    608525 7blx:4 (3.15) BS03 CLA ? GO:0009765 ... Q75VZ0 N/A
    608526 7blx:4 (3.15) BS04 CLA ? GO:0009765 ... Q75VZ0 N/A
    608527 7blx:4 (3.15) BS05 CLA ? GO:0009765 ... Q75VZ0 N/A
    608528 7blx:4 (3.15) BS06 CLA ? GO:0009765 ... Q75VZ0 N/A
    608529 7blx:4 (3.15) BS07 CLA ? GO:0009765 ... Q75VZ0 N/A
    608530 7blx:4 (3.15) BS08 CLA ? GO:0009765 ... Q75VZ0 N/A
    608531 7blx:4 (3.15) BS09 CLA ? GO:0009765 ... Q75VZ0 N/A
    608532 7blx:4 (3.15) BS10 CHL ? GO:0009765 ... Q75VZ0 N/A
    608533 7blx:4 (3.15) BS11 CHL ? GO:0009765 ... Q75VZ0 N/A
    608534 7blx:4 (3.15) BS12 CLA ? GO:0009765 ... Q75VZ0 N/A
    608535 7blx:4 (3.15) BS13 CHL ? GO:0009765 ... Q75VZ0 N/A
    608536 7blx:4 (3.15) BS14 CLA ? GO:0009765 ... Q75VZ0 N/A
    608537 7blx:4 (3.15) BS15 CHL ? GO:0009765 ... Q75VZ0 N/A
    608538 7blx:4 (3.15) BS16 CLA ? GO:0009765 ... Q75VZ0 N/A
    608539 7blx:5 (3.15) BS01 CLA ? GO:0009765 ... Q75VY8 N/A
    608540 7blx:5 (3.15) BS02 CLA ? GO:0009765 ... Q75VY8 N/A
    608541 7blx:5 (3.15) BS03 CLA ? GO:0009765 ... Q75VY8 N/A
    608542 7blx:5 (3.15) BS04 CLA ? GO:0009765 ... Q75VY8 N/A
    608543 7blx:5 (3.15) BS05 CLA ? GO:0009765 ... Q75VY8 N/A
    608544 7blx:5 (3.15) BS06 CLA ? GO:0009765 ... Q75VY8 N/A
    608545 7blx:5 (3.15) BS07 CLA ? GO:0009765 ... Q75VY8 N/A
    608546 7blx:5 (3.15) BS08 CLA ? GO:0009765 ... Q75VY8 N/A
    608547 7blx:5 (3.15) BS09 CLA ? GO:0009765 ... Q75VY8 N/A
    608548 7blx:5 (3.15) BS10 CLA ? GO:0009765 ... Q75VY8 N/A
    608549 7blx:5 (3.15) BS11 CHL ? GO:0009765 ... Q75VY8 N/A
    608550 7blx:5 (3.15) BS12 CHL ? GO:0009765 ... Q75VY8 N/A
    608551 7blx:5 (3.15) BS13 CLA ? GO:0009765 ... Q75VY8 N/A
    608552 7blx:5 (3.15) BS14 CLA ? GO:0009765 ... Q75VY8 N/A
    608553 7blx:5 (3.15) BS15 CLA ? GO:0009765 ... Q75VY8 N/A
    608554 7blx:5 (3.15) BS16 CHL ? GO:0009765 ... Q75VY8 N/A
    608555 7blx:5 (3.15) BS17 CLA ? GO:0009765 ... Q75VY8 N/A
    608556 7blx:5 (3.15) BS18 CLA ? GO:0009765 ... Q75VY8 N/A
    608557 7blx:5 (3.15) BS19 CLA ? GO:0009765 ... Q75VY8 N/A
    608558 7blx:5 (3.15) BS20 CLA ? GO:0009765 ... Q75VY8 N/A
    608559 7blx:6 (3.15) BS01 CLA ? GO:0009765 ... Q75VY6 N/A
    608560 7blx:6 (3.15) BS02 CLA ? GO:0009765 ... Q75VY6 N/A
    608561 7blx:6 (3.15) BS03 CLA ? GO:0009765 ... Q75VY6 N/A
    608562 7blx:6 (3.15) BS04 CLA ? GO:0009765 ... Q75VY6 N/A
    608563 7blx:6 (3.15) BS05 CLA ? GO:0009765 ... Q75VY6 N/A
    608564 7blx:6 (3.15) BS06 CLA ? GO:0009765 ... Q75VY6 N/A
    608565 7blx:6 (3.15) BS07 CLA ? GO:0009765 ... Q75VY6 N/A
    608566 7blx:6 (3.15) BS08 CLA ? GO:0009765 ... Q75VY6 N/A
    608567 7blx:6 (3.15) BS09 CLA ? GO:0009765 ... Q75VY6 N/A
    608568 7blx:6 (3.15) BS10 CLA ? GO:0009765 ... Q75VY6 N/A
    608569 7blx:6 (3.15) BS11 CLA ? GO:0009765 ... Q75VY6 N/A
    608570 7blx:6 (3.15) BS12 CLA ? GO:0009765 ... Q75VY6 N/A
    608571 7blx:6 (3.15) BS13 CHL ? GO:0009765 ... Q75VY6 N/A
    608572 7blx:6 (3.15) BS14 CHL ? GO:0009765 ... Q75VY6 N/A
    608573 7blx:6 (3.15) BS15 CLA ? GO:0009765 ... Q75VY6 N/A
    608574 7blx:6 (3.15) BS16 CHL ? GO:0009765 ... Q75VY6 N/A
    608575 7blx:6 (3.15) BS17 CLA ? GO:0009765 ... Q75VY6 N/A
    608576 7blx:6 (3.15) BS18 CHL ? GO:0009765 ... Q75VY6 N/A
    608577 7blx:6 (3.15) BS19 CLA ? GO:0009765 ... Q75VY6 N/A
    608578 7blx:6 (3.15) BS20 CLA ? GO:0009765 ... Q75VY6 N/A
    608579 7blx:7 (3.15) BS01 CLA ? GO:0009765 ... Q84Y02 N/A
    608580 7blx:7 (3.15) BS02 CLA ? GO:0009765 ... Q84Y02 N/A
    608581 7blx:7 (3.15) BS03 CLA ? GO:0009765 ... Q84Y02 N/A
    608582 7blx:7 (3.15) BS04 CLA ? GO:0009765 ... Q84Y02 N/A
    608583 7blx:7 (3.15) BS05 CLA ? GO:0009765 ... Q84Y02 N/A
    608584 7blx:7 (3.15) BS06 CLA ? GO:0009765 ... Q84Y02 N/A
    608585 7blx:7 (3.15) BS07 CLA ? GO:0009765 ... Q84Y02 N/A
    608586 7blx:7 (3.15) BS08 CLA ? GO:0009765 ... Q84Y02 N/A
    608587 7blx:7 (3.15) BS09 CLA ? GO:0009765 ... Q84Y02 N/A
    608588 7blx:7 (3.15) BS10 CHL ? GO:0009765 ... Q84Y02 N/A
    608589 7blx:7 (3.15) BS11 CLA ? GO:0009765 ... Q84Y02 N/A
    608590 7blx:7 (3.15) BS12 CLA ? GO:0009765 ... Q84Y02 N/A
    608591 7blx:7 (3.15) BS13 CLA ? GO:0009765 ... Q84Y02 N/A
    608592 7blx:7 (3.15) BS14 CLA ? GO:0009765 ... Q84Y02 N/A
    608593 7blx:7 (3.15) BS15 CLA ? GO:0009765 ... Q84Y02 N/A
    608594 7blx:7 (3.15) BS16 CLA ? GO:0009765 ... Q84Y02 N/A
    608595 7blx:8 (3.15) BS01 CHL ? GO:0009765 ... Q75VY7 N/A
    608596 7blx:8 (3.15) BS02 CLA ? GO:0009765 ... Q75VY7 N/A
    608597 7blx:8 (3.15) BS03 CLA ? GO:0009765 ... Q75VY7 N/A
    608598 7blx:8 (3.15) BS04 CLA ? GO:0009765 ... Q75VY7 N/A
    608599 7blx:8 (3.15) BS05 CLA ? GO:0009765 ... Q75VY7 N/A
    608600 7blx:8 (3.15) BS06 CLA ? GO:0009765 ... Q75VY7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).