SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    614001 7cpu:SY (2.82) BS01 rna ? GO:0002181 ... P62849 36517592
    614002 7cpu:SZ (2.82) BS01 rna ? GO:0002181 ... P62852 36517592
    614003 7cpu:Sa (2.82) BS01 rna ? GO:0002181 ... P62855 36517592
    614004 7cpu:Sa (2.82) BS02 ZN ? GO:0002181 ... P62855 36517592
    614005 7cpu:Sb (2.82) BS01 rna ? GO:0003735 ... Q6ZWU9 36517592
    614006 7cpu:Sc (2.82) BS01 rna ? GO:0002181 ... P62858 36517592
    614007 7cpu:Sd (2.82) BS01 rna ? GO:0002181 ... P62274 36517592
    614008 7cpu:Sd (2.82) BS02 ZN ? GO:0002181 ... P62274 36517592
    614009 7cpu:Sd (2.82) BS03 MG ? GO:0002181 ... P62274 36517592
    614010 7cpu:Se (2.82) BS01 rna ? GO:0002181 ... P62862 36517592
    614011 7cpu:Sg (2.82) BS01 rna ? GO:0001891 ... P68040 36517592
    614012 7cpv:LA (3.03) BS01 rna ? GO:0002181 ... P62918 36517592
    614013 7cpv:LA (3.03) BS02 rna ? GO:0002181 ... P62918 36517592
    614014 7cpv:LA (3.03) BS03 MG ? GO:0002181 ... P62918 36517592
    614015 7cpv:LA (3.03) BS04 MG ? GO:0002181 ... P62918 36517592
    614016 7cpv:LB (3.03) BS01 rna ? GO:0002181 ... P27659 36517592
    614017 7cpv:LC (3.03) BS01 rna ? GO:0002181 ... Q9D8E6 36517592
    614018 7cpv:LC (3.03) BS02 rna ? GO:0002181 ... Q9D8E6 36517592
    614019 7cpv:LD (3.03) BS01 rna ? GO:0002181 ... P47962 36517592
    614020 7cpv:LD (3.03) BS02 rna ? GO:0002181 ... P47962 36517592
    614021 7cpv:LE (3.03) BS01 rna ? GO:0002181 ... P47911 36517592
    614022 7cpv:LF (3.03) BS01 rna ? GO:0000463 ... P14148 36517592
    614023 7cpv:LF (3.03) BS02 rna ? GO:0000463 ... P14148 36517592
    614024 7cpv:LG (3.03) BS01 rna ? GO:0002181 ... P12970 36517592
    614025 7cpv:LG (3.03) BS02 rna ? GO:0002181 ... P12970 36517592
    614026 7cpv:LH (3.03) BS01 rna ? GO:0002181 ... P51410 36517592
    614027 7cpv:LI (3.03) BS01 rna ? GO:0000027 ... P86048 36517592
    614028 7cpv:LI (3.03) BS02 rna ? GO:0000027 ... P86048 36517592
    614029 7cpv:LJ (3.03) BS01 rna ? GO:0000027 ... Q9CXW4 36517592
    614030 7cpv:LJ (3.03) BS02 rna ? GO:0000027 ... Q9CXW4 36517592
    614031 7cpv:LL (3.03) BS01 rna ? GO:0001824 ... P47963 36517592
    614032 7cpv:LL (3.03) BS02 rna ? GO:0001824 ... P47963 36517592
    614033 7cpv:LM (3.03) BS01 rna ? GO:0002181 ... Q9CR57 36517592
    614034 7cpv:LN (3.03) BS01 rna ? GO:0002181 ... Q9CZM2 36517592
    614035 7cpv:LN (3.03) BS02 rna ? GO:0002181 ... Q9CZM2 36517592
    614036 7cpv:LO (3.03) BS01 rna ? GO:0002181 ... P19253 36517592
    614037 7cpv:LP (3.03) BS01 rna ? GO:0002181 ... Q9CPR4 36517592
    614038 7cpv:LP (3.03) BS02 rna ? GO:0002181 ... Q9CPR4 36517592
    614039 7cpv:LQ (3.03) BS01 rna ? GO:0002181 ... P35980 36517592
    614040 7cpv:LR (3.03) BS01 rna ? GO:0002181 ... P84099 36517592
    614041 7cpv:LR (3.03) BS02 rna ? GO:0002181 ... P84099 36517592
    614042 7cpv:LS (3.03) BS01 rna ? GO:0002181 ... P62717 36517592
    614043 7cpv:LS (3.03) BS02 rna ? GO:0002181 ... P62717 36517592
    614044 7cpv:LT (3.03) BS01 rna ? GO:0002181 ... O09167 36517592
    614045 7cpv:LT (3.03) BS02 rna ? GO:0002181 ... O09167 36517592
    614046 7cpv:LU (3.03) BS01 rna ? GO:0003723 ... P67984 36517592
    614047 7cpv:LV (3.03) BS01 rna ? GO:0000122 ... P62830 36517592
    614048 7cpv:LV (3.03) BS02 rna ? GO:0000122 ... P62830 36517592
    614049 7cpv:LW (3.03) BS01 rna ? GO:0000027 ... Q8BP67 36517592
    614050 7cpv:LX (3.03) BS01 rna ? GO:0002181 ... P62751 36517592
    614051 7cpv:LX (3.03) BS02 rna ? GO:0002181 ... P62751 36517592
    614052 7cpv:LY (3.03) BS01 rna ? GO:0002181 ... P61255 36517592
    614053 7cpv:LY (3.03) BS02 rna ? GO:0002181 ... P61255 36517592
    614054 7cpv:LZ (3.03) BS01 rna ? GO:0002181 ... P61358 36517592
    614055 7cpv:La (3.03) BS01 rna ? GO:0002181 ... P14115 36517592
    614056 7cpv:Lb (3.03) BS01 rna ? GO:0002181 ... P47915 36517592
    614057 7cpv:Lc (3.03) BS01 rna ? GO:0002181 ... P62889 36517592
    614058 7cpv:Ld (3.03) BS01 rna ? GO:0002181 ... P62900 36517592
    614059 7cpv:Le (3.03) BS01 rna ? GO:0002181 ... P62911 36517592
    614060 7cpv:Le (3.03) BS02 MG ? GO:0002181 ... P62911 36517592
    614061 7cpv:Lf (3.03) BS01 rna ? GO:0002181 ... O55142 36517592
    614062 7cpv:Lf (3.03) BS02 MG ? GO:0002181 ... O55142 36517592
    614063 7cpv:Lg (3.03) BS01 rna ? GO:0002181 ... Q9D1R9 36517592
    614064 7cpv:Lg (3.03) BS02 ZN ? GO:0002181 ... Q9D1R9 36517592
    614065 7cpv:Lh (3.03) BS01 rna ? GO:0000463 ... Q6ZWV7 36517592
    614066 7cpv:Lh (3.03) BS02 rna ? GO:0000463 ... Q6ZWV7 36517592
    614067 7cpv:Li (3.03) BS01 rna ? GO:0002181 ... P47964 36517592
    614068 7cpv:Lj (3.03) BS01 rna ? GO:0002181 ... Q9D823 36517592
    614069 7cpv:Lj (3.03) BS02 rna ? GO:0002181 ... Q9D823 36517592
    614070 7cpv:Lk (3.03) BS01 rna ? GO:0001501 ... Q9JJI8 36517592
    614071 7cpv:Ll (3.03) BS01 rna ? GO:0002181 ... Q9CQD0 36517592
    614072 7cpv:Ll (3.03) BS02 rna ? GO:0002181 ... Q9CQD0 36517592
    614073 7cpv:Lm (3.03) BS01 rna ? GO:0002181 ... P62984 36517592
    614074 7cpv:Lm (3.03) BS02 ZN ? GO:0002181 ... P62984 36517592
    614075 7cpv:Lo (3.03) BS01 rna ? GO:0002181 ... P83882 36517592
    614076 7cpv:Lo (3.03) BS02 rna ? GO:0002181 ... P83882 36517592
    614077 7cpv:Lo (3.03) BS03 ZN ? GO:0002181 ... P83882 36517592
    614078 7cpv:Lp (3.03) BS01 rna ? GO:0002181 ... P61514 36517592
    614079 7cpv:Lp (3.03) BS02 rna ? GO:0002181 ... P61514 36517592
    614080 7cpv:Lp (3.03) BS03 ZN ? GO:0002181 ... P61514 36517592
    614081 7cpv:Lr (3.03) BS01 rna ? GO:0002181 ... P41105 36517592
    614082 7cpv:SA (3.03) BS01 rna ? GO:0000028 ... P14206 36517592
    614083 7cpv:SB (3.03) BS01 rna ? GO:0002181 ... P97351 36517592
    614084 7cpv:SC (3.03) BS01 rna ? GO:0002181 ... P25444 36517592
    614085 7cpv:SD (3.03) BS01 rna 4.2.99.18 GO:0002181 ... P62908 36517592
    614086 7cpv:SE (3.03) BS01 rna ? GO:0002181 ... P62702 36517592
    614087 7cpv:SF (3.03) BS01 rna ? GO:0002181 ... P97461 36517592
    614088 7cpv:SG (3.03) BS01 rna ? GO:0000082 ... P62754 36517592
    614089 7cpv:SH (3.03) BS01 rna ? GO:0001843 ... P62082 36517592
    614090 7cpv:SI (3.03) BS01 rna ? GO:0002181 ... P62242 36517592
    614091 7cpv:SI (3.03) BS02 rna ? GO:0002181 ... P62242 36517592
    614092 7cpv:SJ (3.03) BS01 rna ? GO:0002181 ... Q6ZWN5 36517592
    614093 7cpv:SK (3.03) BS01 rna ? GO:0002181 ... P63325 36517592
    614094 7cpv:SL (3.03) BS01 rna ? GO:0002181 ... P62281 36517592
    614095 7cpv:SN (3.03) BS01 rna ? GO:0002181 ... P62301 36517592
    614096 7cpv:SN (3.03) BS02 rna ? GO:0002181 ... P62301 36517592
    614097 7cpv:SO (3.03) BS01 rna ? GO:0000028 ... P62264 36517592
    614098 7cpv:SP (3.03) BS01 rna ? GO:0000056 ... P62843 36517592
    614099 7cpv:SQ (3.03) BS01 rna ? GO:0002181 ... P14131 36517592
    614100 7cpv:SR (3.03) BS01 rna ? GO:0002181 ... P63276 36517592
    614101 7cpv:SS (3.03) BS01 rna ? GO:0002181 ... P62270 36517592
    614102 7cpv:ST (3.03) BS01 rna ? GO:0002181 ... Q9CZX8 36517592
    614103 7cpv:SU (3.03) BS01 rna ? GO:0002181 ... P60867 36517592
    614104 7cpv:SW (3.03) BS01 rna ? GO:0002181 ... P62245 36517592
    614105 7cpv:SX (3.03) BS01 rna ? GO:0002181 ... P62267 36517592
    614106 7cpv:SY (3.03) BS01 rna ? GO:0002181 ... P62849 36517592
    614107 7cpv:SZ (3.03) BS01 rna ? GO:0002181 ... P62852 36517592
    614108 7cpv:Sa (3.03) BS01 rna ? GO:0002181 ... P62855 36517592
    614109 7cpv:Sa (3.03) BS02 ZN ? GO:0002181 ... P62855 36517592
    614110 7cpv:Sb (3.03) BS01 rna ? GO:0003735 ... Q6ZWU9 36517592
    614111 7cpv:Sc (3.03) BS01 rna ? GO:0002181 ... P62858 36517592
    614112 7cpv:Sd (3.03) BS01 rna ? GO:0002181 ... P62274 36517592
    614113 7cpv:Sd (3.03) BS02 ZN ? GO:0002181 ... P62274 36517592
    614114 7cpv:Se (3.03) BS01 rna ? GO:0002181 ... P62862 36517592
    614115 7cpv:Sg (3.03) BS01 rna ? GO:0001891 ... P68040 36517592
    614116 7cpw:A (2.849) BS01 dna 2.7.7.7 GO:0003677 ... P42494 35226319
    614117 7cpw:B (2.849) BS01 dna 2.7.7.7 GO:0003677 ... P42494 35226319
    614118 7cpx:A (2.91) BS01 NAP 2.3.1.161 GO:0003824 ... Q9Y8A5 33558520
    614119 7cpx:B (2.91) BS01 NAP 2.3.1.161 GO:0003824 ... Q9Y8A5 33558520
    614120 7cpy:A (3.6) BS01 NAP 2.3.1.161 GO:0003824 ... Q9Y8A5 33558520
    614121 7cpy:B (3.6) BS01 NAP 2.3.1.161 GO:0003824 ... Q9Y8A5 33558520
    614122 7cpz:A (2.5) BS01 BTN ? GO:0009374 ... N/A 33708394
    614123 7cq2:A (2.5) BS01 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614124 7cq2:A (2.5) BS02 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614125 7cq2:B (2.5) BS01 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614126 7cq2:B (2.5) BS02 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614127 7cq3:A (1.449) BS01 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614128 7cq3:A (1.449) BS02 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614129 7cq4:A (3.294) BS01 dna 3.1.-.- GO:0000228 ... P38324 34181713
    614130 7cq4:A (3.294) BS02 dna 3.1.-.- GO:0000228 ... P38324 34181713
    614131 7cq4:A (3.294) BS03 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614132 7cq4:A (3.294) BS04 ZN 3.1.-.- GO:0000228 ... P38324 34181713
    614133 7cq4:B (3.294) BS01 dna ? GO:0005634 ... Q12098 34181713
    614134 7cq4:B (3.294) BS02 dna ? GO:0005634 ... Q12098 34181713
    614135 7cq5:C (2.6) BS01 ATP ? GO:0005254 ... P51798 N/A
    614136 7cq5:D (2.6) BS01 ATP ? GO:0005254 ... P51798 N/A
    614137 7cq7:C (3.55) BS01 ADP ? GO:0005254 ... P51798 N/A
    614138 7cq7:D (3.55) BS01 ADP ? GO:0005254 ... P51798 N/A
    614139 7cqe:A (2.69) BS01 YDJ 2.7.10.1 GO:0004672 ... Q12866 33114206
    614140 7cqe:C (2.69) BS01 YDJ 2.7.10.1 GO:0004672 ... Q12866 33114206
    614141 7cqh:B (2.15) BS01 peptide ? GO:0005509 ... P62152 33326749
    614142 7cqh:B (2.15) BS02 CA ? GO:0005509 ... P62152 33326749
    614143 7cqh:B (2.15) BS03 CA ? GO:0005509 ... P62152 33326749
    614144 7cqi:A (3.2) BS01 peptide ? GO:0002903 ... Q8N138 33558762
    614145 7cqi:S (3.2) BS01 PLS 2.3.1.50 GO:0004758 ... O15269 33558762
    614146 7cqi:S (3.2) BS02 GE0 2.3.1.50 GO:0004758 ... O15269 33558762
    614147 7cqi:T (3.2) BS01 PLS 2.3.1.50 GO:0004758 ... O15270 33558762
    614148 7cqi:T (3.2) BS02 GE0 2.3.1.50 GO:0004758 ... O15270 33558762
    614149 7cqk:A (3.3) BS01 peptide ? GO:0002903 ... Q8N138 33558762
    614150 7cqk:A (3.3) BS02 GE0 ? GO:0002903 ... Q8N138 33558762
    614151 7cqk:S (3.3) BS01 GE0 2.3.1.50 GO:0004758 ... O15269 33558762
    614152 7cqk:T (3.3) BS01 PLS 2.3.1.50 GO:0004758 ... O15270 33558762
    614153 7cqk:T (3.3) BS02 GE0 2.3.1.50 GO:0004758 ... O15270 33558762
    614154 7cqm:A (1.8) BS01 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614155 7cqm:A (1.8) BS02 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614156 7cqm:A (1.8) BS03 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614157 7cqm:A (1.8) BS04 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614158 7cqm:A (1.8) BS05 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614159 7cqm:A (1.8) BS06 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614160 7cqm:A (1.8) BS07 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614161 7cqm:A (1.8) BS08 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614162 7cqm:A (1.8) BS09 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614163 7cqm:A (1.8) BS10 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614164 7cqm:A (1.8) BS11 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614165 7cqm:A (1.8) BS12 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614166 7cqm:A (1.8) BS13 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614167 7cqm:A (1.8) BS14 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614168 7cqm:A (1.8) BS15 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614169 7cqm:A (1.8) BS16 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614170 7cqm:B (1.8) BS01 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614171 7cqm:B (1.8) BS02 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614172 7cqm:B (1.8) BS03 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614173 7cqm:B (1.8) BS04 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614174 7cqm:B (1.8) BS05 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614175 7cqm:B (1.8) BS06 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614176 7cqm:B (1.8) BS07 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614177 7cqm:B (1.8) BS08 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    614178 7cqm:B (1.8) BS09 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614179 7cqm:B (1.8) BS10 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614180 7cqm:B (1.8) BS11 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614181 7cqm:B (1.8) BS12 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614182 7cqm:B (1.8) BS13 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614183 7cqm:B (1.8) BS14 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614184 7cqm:B (1.8) BS15 79M 2.3.1.275 GO:0005886 ... O66905 N/A
    614185 7cqn:A (1.962) BS01 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614186 7cqn:A (1.962) BS02 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614187 7cqn:B (1.962) BS01 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614188 7cqn:C (1.962) BS01 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614189 7cqo:A (1.71) BS01 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    614190 7cqo:A (1.71) BS02 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    614191 7cqo:A (1.71) BS03 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    614192 7cqo:A (1.71) BS04 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    614193 7cqo:A (1.71) BS05 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    614194 7cqp:B (1.9) BS01 peptide ? GO:0005509 ... P0DP26 33326749
    614195 7cqp:B (1.9) BS02 CA ? GO:0005509 ... P0DP26 33326749
    614196 7cqp:B (1.9) BS03 CA ? GO:0005509 ... P0DP26 33326749
    614197 7cqq:A (2.295) BS01 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614198 7cqq:A (2.295) BS02 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614199 7cqq:A (2.295) BS03 MG 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    614200 7cqq:A (2.295) BS04 ANP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).