SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    616001 7d3t:A (2.7) BS02 dna ? GO:0003677 ... B8B5N8 35332155
    616002 7d3t:B (2.7) BS01 dna ? GO:0003677 ... B8B5N8 35332155
    616003 7d3t:B (2.7) BS02 dna ? GO:0003677 ... B8B5N8 35332155
    616004 7d3t:C (2.7) BS01 dna ? GO:0003677 ... B8B5N8 35332155
    616005 7d3t:C (2.7) BS02 dna ? GO:0003677 ... B8B5N8 35332155
    616006 7d3t:D (2.7) BS01 dna ? GO:0003677 ... B8B5N8 35332155
    616007 7d3t:D (2.7) BS02 dna ? GO:0003677 ... B8B5N8 35332155
    616008 7d3v:A (-1.00) BS01 dna 3.5.4.38 GO:0000932 ... P31941 N/A
    616009 7d3v:A (-1.00) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 N/A
    616010 7d3v:B (-1.00) BS01 dna 3.5.4.38 GO:0000932 ... P31941 N/A
    616011 7d3v:B (-1.00) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 N/A
    616012 7d3w:A (-1.00) BS01 dna 3.5.4.38 GO:0000932 ... P31941 34792260
    616013 7d3w:A (-1.00) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 34792260
    616014 7d3x:A (-1.00) BS01 dna 3.5.4.38 GO:0000932 ... P31941 34792260
    616015 7d3x:A (-1.00) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 34792260
    616016 7d3z:A (1.65) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    616017 7d41:A (2.419) BS01 OCA ? GO:0006631 ... B2HNE1 N/A
    616018 7d41:B (2.419) BS01 OCA ? GO:0006631 ... B2HNE1 N/A
    616019 7d42:A (2.697) BS01 peptide ? GO:0004879 ... Q96RI1 33121679
    616020 7d42:A (2.697) BS02 GWF ? GO:0004879 ... Q96RI1 33121679 BindingDB: EC50=0.200000nM
    616021 7d43:P (4.3) BS01 peptide 3.6.5.3 GO:0000049 ... P41091 33220178
    616022 7d47:A (1.97) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    616023 7d47:B (1.97) BS01 CA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    616024 7d49:A (1.651) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    616025 7d4c:A (1.97) BS01 FAD ? GO:0000166 ... A0A0G4DCU0 33554108
    616026 7d4d:A (2.29) BS01 FAD ? GO:0000166 ... A0A0G4DCU0 33554108
    616027 7d4d:A (2.29) BS02 LYS ? GO:0000166 ... A0A0G4DCU0 33554108
    616028 7d4e:A (1.85) BS01 FAD ? GO:0000166 ... A0A0G4DCU0 33554108
    616029 7d4e:A (1.85) BS02 LYS ? GO:0000166 ... A0A0G4DCU0 33554108
    616030 7d4f:A (2.57) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33674802
    616031 7d4f:A (2.57) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33674802
    616032 7d4f:A (2.57) BS03 H3U 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33674802
    616033 7d4f:A (2.57) BS04 H3U 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33674802
    616034 7d4i:3B (4.0) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    616035 7d4i:3C (4.0) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    616036 7d4i:3D (4.0) BS01 rna ? GO:0000154 ... Q12460 N/A
    616037 7d4i:3D (4.0) BS02 rna ? GO:0000154 ... Q12460 N/A
    616038 7d4i:3E (4.0) BS01 rna ? GO:0000447 ... Q12499 N/A
    616039 7d4i:3F (4.0) BS01 rna ? GO:0000447 ... Q06506 N/A
    616040 7d4i:3G (4.0) BS01 rna ? GO:0000245 ... P39990 N/A
    616041 7d4i:3H (4.0) BS01 rna ? GO:0000245 ... P39990 N/A
    616042 7d4i:5C (4.0) BS01 rna ? GO:0000447 ... P40055 N/A
    616043 7d4i:5C (4.0) BS02 rna ? GO:0000447 ... P40055 N/A
    616044 7d4i:5C (4.0) BS03 rna ? GO:0000447 ... P40055 N/A
    616045 7d4i:5D (4.0) BS01 rna ? GO:0000447 ... P34247 N/A
    616046 7d4i:5D (4.0) BS02 rna ? GO:0000447 ... P34247 N/A
    616047 7d4i:5E (4.0) BS01 rna ? GO:0000447 ... P47083 N/A
    616048 7d4i:5F (4.0) BS01 rna ? GO:0003723 ... P32899 N/A
    616049 7d4i:5F (4.0) BS02 rna ? GO:0003723 ... P32899 N/A
    616050 7d4i:5G (4.0) BS01 rna ? GO:0005515 ... P53941 N/A
    616051 7d4i:5H (4.0) BS01 rna ? GO:0000447 ... Q12136 N/A
    616052 7d4i:5H (4.0) BS02 rna ? GO:0000447 ... Q12136 N/A
    616053 7d4i:5I (4.0) BS01 rna ? GO:0000462 ... P33750 N/A
    616054 7d4i:5I (4.0) BS02 rna ? GO:0000462 ... P33750 N/A
    616055 7d4i:5I (4.0) BS03 rna ? GO:0000462 ... P33750 N/A
    616056 7d4i:5J (4.0) BS01 rna ? GO:0000447 ... Q12035 N/A
    616057 7d4i:5J (4.0) BS02 rna ? GO:0000447 ... Q12035 N/A
    616058 7d4i:5K (4.0) BS01 rna ? GO:0000447 ... Q05498 N/A
    616059 7d4i:5K (4.0) BS02 ZN ? GO:0000447 ... Q05498 N/A
    616060 7d4i:A4 (4.0) BS01 rna ? GO:0000462 ... Q06679 N/A
    616061 7d4i:A9 (4.0) BS01 rna ? GO:0000049 ... P38882 N/A
    616062 7d4i:AF (4.0) BS01 rna ? GO:0000462 ... Q04305 N/A
    616063 7d4i:AF (4.0) BS02 rna ? GO:0000462 ... Q04305 N/A
    616064 7d4i:AG (4.0) BS01 rna ? GO:0000462 ... Q02931 N/A
    616065 7d4i:AG (4.0) BS02 rna ? GO:0000462 ... Q02931 N/A
    616066 7d4i:B1 (4.0) BS01 rna ? GO:0000028 ... P25635 N/A
    616067 7d4i:B2 (4.0) BS01 rna ? GO:0000447 ... Q12220 N/A
    616068 7d4i:B3 (4.0) BS01 rna ? GO:0000447 ... Q05946 N/A
    616069 7d4i:B6 (4.0) BS01 rna ? GO:0000447 ... Q02354 N/A
    616070 7d4i:B8 (4.0) BS01 rna ? GO:0000292 ... P40362 N/A
    616071 7d4i:B8 (4.0) BS02 rna ? GO:0000292 ... P40362 N/A
    616072 7d4i:BE (4.0) BS01 rna ? GO:0003674 ... Q06078 N/A
    616073 7d4i:RE (4.0) BS01 rna ? GO:0000028 ... P53254 N/A
    616074 7d4i:RF (4.0) BS01 rna ? GO:0000028 ... P25368 N/A
    616075 7d4i:RG (4.0) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    616076 7d4i:RH (4.0) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    616077 7d4i:RJ (4.0) BS01 rna ? GO:0000462 ... Q08965 N/A
    616078 7d4i:RJ (4.0) BS02 rna ? GO:0000462 ... Q08965 N/A
    616079 7d4i:RJ (4.0) BS03 GTP ? GO:0000462 ... Q08965 N/A
    616080 7d4i:RK (4.0) BS01 rna ? GO:0000447 ... Q08096 N/A
    616081 7d4i:RN (4.0) BS01 rna ? GO:0000028 ... Q99207 N/A
    616082 7d4i:RN (4.0) BS02 rna ? GO:0000028 ... Q99207 N/A
    616083 7d4i:RP (4.0) BS01 rna ? GO:0000447 ... P35194 N/A
    616084 7d4i:RQ (4.0) BS01 rna ? GO:0000447 ... Q04500 N/A
    616085 7d4i:RQ (4.0) BS02 rna ? GO:0000447 ... Q04500 N/A
    616086 7d4i:RS (4.0) BS01 rna ? GO:0000447 ... P38333 N/A
    616087 7d4i:RT (4.0) BS01 rna N/A GO:0003723 ... N/A N/A
    616088 7d4i:RZ (4.0) BS01 ADP 3.6.4.13 GO:0000462 ... Q04217 N/A
    616089 7d4i:SC (4.0) BS01 rna ? GO:0000462 ... P33442 N/A
    616090 7d4i:SF (4.0) BS01 rna ? GO:0002181 ... P0CX35 N/A
    616091 7d4i:SG (4.0) BS01 rna ? GO:0000028 ... P26783 N/A
    616092 7d4i:SH (4.0) BS01 rna ? GO:0000462 ... P0CX37 N/A
    616093 7d4i:SI (4.0) BS01 rna ? GO:0002181 ... P26786 N/A
    616094 7d4i:SJ (4.0) BS01 rna ? GO:0000462 ... P0CX39 N/A
    616095 7d4i:SK (4.0) BS01 rna ? GO:0000462 ... O13516 N/A
    616096 7d4i:SM (4.0) BS01 rna ? GO:0000028 ... P0CX47 N/A
    616097 7d4i:SO (4.0) BS01 rna ? GO:0000462 ... P05756 N/A
    616098 7d4i:SP (4.0) BS01 rna ? GO:0000028 ... P06367 N/A
    616099 7d4i:SR (4.0) BS01 rna ? GO:0000462 ... P0CX51 N/A
    616100 7d4i:ST (4.0) BS01 rna ? GO:0000054 ... P0CX55 N/A
    616101 7d4i:SU (4.0) BS01 rna ? GO:0000028 ... P07280 N/A
    616102 7d4i:SX (4.0) BS01 rna ? GO:0002181 ... Q3E7Y3 N/A
    616103 7d4i:SY (4.0) BS01 rna ? GO:0000462 ... P0CX29 N/A
    616104 7d4i:SZ (4.0) BS01 rna ? GO:0000462 ... P0CX31 N/A
    616105 7d4i:Sc (4.0) BS01 rna ? GO:0000028 ... P35997 N/A
    616106 7d4i:Sc (4.0) BS02 ZN ? GO:0000028 ... P35997 N/A
    616107 7d4i:Sd (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    616108 7d4j:A (2.09) BS01 DDS 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616109 7d4j:A (2.09) BS02 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616110 7d4k:A (1.8) BS01 NAP 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616111 7d4k:A (1.8) BS02 FAD 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616112 7d4k:B (1.8) BS01 NAP 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616113 7d4k:B (1.8) BS02 FAD 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616114 7d4l:A (1.6) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    616115 7d4l:A (1.6) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    616116 7d4m:A (1.786) BS01 NAP 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616117 7d4m:A (1.786) BS02 FAD 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616118 7d4m:B (1.786) BS01 NAP 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616119 7d4m:B (1.786) BS02 FAD 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616120 7d4n:A (1.999) BS01 NAP 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616121 7d4n:A (1.999) BS02 FAD 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616122 7d4n:B (1.999) BS01 NAP 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616123 7d4n:B (1.999) BS02 FAD 1.14.13.148 GO:0004497 ... B6BQB2 34630359
    616124 7d4o:A (1.87) BS01 ATP 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616125 7d4o:A (1.87) BS02 ADP 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616126 7d4o:A (1.87) BS03 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616127 7d4o:A (1.87) BS04 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616128 7d4o:A (1.87) BS05 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616129 7d4o:B (1.87) BS01 ATP 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616130 7d4o:B (1.87) BS02 ADP 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616131 7d4o:B (1.87) BS03 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616132 7d4o:B (1.87) BS04 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616133 7d4o:B (1.87) BS05 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616134 7d4p:A (2.7) BS01 GX0 ? GO:0005216 ... Q9UL62 33683200
    616135 7d4p:A (2.7) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    616136 7d4p:A (2.7) BS03 ZN ? GO:0005216 ... Q9UL62 33683200
    616137 7d4p:A (2.7) BS04 CA ? GO:0005216 ... Q9UL62 33683200
    616138 7d4p:A (2.7) BS05 YZY ? GO:0005216 ... Q9UL62 33683200
    616139 7d4p:A (2.7) BS06 YZY ? GO:0005216 ... Q9UL62 33683200
    616140 7d4p:B (2.7) BS01 GX0 ? GO:0005216 ... Q9UL62 33683200
    616141 7d4p:B (2.7) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    616142 7d4p:B (2.7) BS03 ZN ? GO:0005216 ... Q9UL62 33683200
    616143 7d4p:B (2.7) BS04 CA ? GO:0005216 ... Q9UL62 33683200
    616144 7d4p:B (2.7) BS05 YZY ? GO:0005216 ... Q9UL62 33683200
    616145 7d4p:B (2.7) BS06 YZY ? GO:0005216 ... Q9UL62 33683200
    616146 7d4p:C (2.7) BS01 GX0 ? GO:0005216 ... Q9UL62 33683200
    616147 7d4p:C (2.7) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    616148 7d4p:C (2.7) BS03 ZN ? GO:0005216 ... Q9UL62 33683200
    616149 7d4p:C (2.7) BS04 CA ? GO:0005216 ... Q9UL62 33683200
    616150 7d4p:C (2.7) BS05 YZY ? GO:0005216 ... Q9UL62 33683200
    616151 7d4p:C (2.7) BS06 YZY ? GO:0005216 ... Q9UL62 33683200
    616152 7d4p:D (2.7) BS01 YZY ? GO:0005216 ... Q9UL62 33683200
    616153 7d4p:D (2.7) BS02 GX0 ? GO:0005216 ... Q9UL62 33683200
    616154 7d4p:D (2.7) BS03 Y01 ? GO:0005216 ... Q9UL62 33683200
    616155 7d4p:D (2.7) BS04 ZN ? GO:0005216 ... Q9UL62 33683200
    616156 7d4p:D (2.7) BS05 CA ? GO:0005216 ... Q9UL62 33683200
    616157 7d4p:D (2.7) BS06 YZY ? GO:0005216 ... Q9UL62 33683200
    616158 7d4q:A (2.74) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    616159 7d4q:A (2.74) BS02 ZN ? GO:0005216 ... Q9UL62 33683200
    616160 7d4q:A (2.74) BS03 CA ? GO:0005216 ... Q9UL62 33683200
    616161 7d4q:A (2.74) BS04 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616162 7d4q:A (2.74) BS05 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616163 7d4q:B (2.74) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    616164 7d4q:B (2.74) BS02 ZN ? GO:0005216 ... Q9UL62 33683200
    616165 7d4q:B (2.74) BS03 CA ? GO:0005216 ... Q9UL62 33683200
    616166 7d4q:B (2.74) BS04 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616167 7d4q:B (2.74) BS05 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616168 7d4q:C (2.74) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    616169 7d4q:C (2.74) BS02 ZN ? GO:0005216 ... Q9UL62 33683200
    616170 7d4q:C (2.74) BS03 CA ? GO:0005216 ... Q9UL62 33683200
    616171 7d4q:C (2.74) BS04 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616172 7d4q:C (2.74) BS05 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616173 7d4q:D (2.74) BS01 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616174 7d4q:D (2.74) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    616175 7d4q:D (2.74) BS03 ZN ? GO:0005216 ... Q9UL62 33683200
    616176 7d4q:D (2.74) BS04 CA ? GO:0005216 ... Q9UL62 33683200
    616177 7d4q:D (2.74) BS05 GWR ? GO:0005216 ... Q9UL62 33683200 BindingDB: IC50=9.3nM
    616178 7d4r:A (1.6) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616179 7d4r:B (1.6) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616180 7d4s:A (1.93) BS01 APC 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616181 7d4s:A (1.93) BS02 APC 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616182 7d4s:A (1.93) BS03 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616183 7d4s:A (1.93) BS04 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616184 7d4s:A (1.93) BS05 MG 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616185 7d4u:A (2.7) BS01 ATP 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616186 7d4u:A (2.7) BS02 ATP 2.7.7.- GO:0005524 ... P0DSP4 33836064
    616187 7d4x:A (1.599) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    616188 7d50:A (1.77) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616189 7d50:B (1.77) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616190 7d52:A (2.2) BS01 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    616191 7d52:A (2.2) BS02 HEM 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    616192 7d52:A (2.2) BS03 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    616193 7d52:A (2.2) BS04 ZN 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    616194 7d52:A (2.2) BS05 ZN 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    616195 7d53:A (1.6) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616196 7d53:A (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    616197 7d53:B (1.6) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616198 7d53:B (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    616199 7d53:C (1.6) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616200 7d53:C (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).