SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    616201 7d53:D (1.6) BS01 MG ? GO:0006541 ... Q9I6J4 34605433
    616202 7d53:D (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    616203 7d54:A (1.85) BS01 GLN 6.3.5.2 GO:0005829 ... A0R003 34605433
    616204 7d54:B (1.85) BS01 GLN 6.3.5.2 GO:0005829 ... A0R003 34605433
    616205 7d56:A (3.175) BS01 BFB 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616206 7d56:A (3.175) BS02 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616207 7d56:A (3.175) BS03 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616208 7d56:A (3.175) BS04 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616209 7d56:A (3.175) BS05 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616210 7d56:A (3.175) BS06 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616211 7d56:B (3.175) BS01 BFB 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616212 7d56:B (3.175) BS02 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616213 7d56:B (3.175) BS03 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616214 7d56:B (3.175) BS04 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616215 7d56:B (3.175) BS05 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616216 7d56:B (3.175) BS06 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616217 7d56:C (3.175) BS01 BFB 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616218 7d56:C (3.175) BS02 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616219 7d56:C (3.175) BS03 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616220 7d56:C (3.175) BS04 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616221 7d56:C (3.175) BS05 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616222 7d56:C (3.175) BS06 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616223 7d57:A (2.104) BS01 37O 2.7.10.2 GO:0004672 ... P00523 N/A
    616224 7d57:B (2.104) BS01 37O 2.7.10.2 GO:0004672 ... P00523 N/A
    616225 7d58:A (2.9) BS01 dna 2.7.7.6 GO:0000287 ... O14802 33558766
    616226 7d58:A (2.9) BS02 rna 2.7.7.6 GO:0000287 ... O14802 33558766
    616227 7d58:B (2.9) BS01 dna 2.7.7.6 GO:0000428 ... Q9NW08 33558766
    616228 7d58:B (2.9) BS02 rna 2.7.7.6 GO:0000428 ... Q9NW08 33558766
    616229 7d58:B (2.9) BS03 ZN 2.7.7.6 GO:0000428 ... Q9NW08 33558766
    616230 7d58:E (2.9) BS01 dna ? GO:0000428 ... P19388 33558766
    616231 7d58:J (2.9) BS01 ZN ? GO:0000428 ... P62875 33558766
    616232 7d58:L (2.9) BS01 ZN ? GO:0000428 ... P53803 33558766
    616233 7d58:P (2.9) BS01 SF4 ? GO:0000428 ... Q9H1D9 33558766
    616234 7d59:B (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... Q9NW08 33558766
    616235 7d59:I (3.1) BS01 ZN ? GO:0000428 ... Q9Y2Y1 33558766
    616236 7d59:J (3.1) BS01 ZN ? GO:0000428 ... P62875 33558766
    616237 7d59:L (3.1) BS01 ZN ? GO:0000428 ... P53803 33558766
    616238 7d59:P (3.1) BS01 SF4 ? GO:0000428 ... Q9H1D9 33558766
    616239 7d5a:A (2.2) BS01 GX6 3.4.23.46 GO:0004190 ... P56817 33719429
    616240 7d5b:A (1.31) BS01 66F 3.4.23.45 GO:0004190 ... Q9Y5Z0 33719429
    616241 7d5c:A (1.895) BS01 GVU 6.1.1.5 GO:0000049 ... P09436 33712620
    616242 7d5c:A (1.895) BS02 GV6 6.1.1.5 GO:0000049 ... P09436 33712620
    616243 7d5g:A (1.6) BS01 FRU 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    616244 7d5g:A (1.6) BS02 BGC 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    616245 7d5i:A (2.79) BS01 HEB 1.10.3.- GO:0005886 ... A0QXA8 34330928
    616246 7d5i:A (2.79) BS02 HEB 1.10.3.- GO:0005886 ... A0QXA8 34330928
    616247 7d5i:A (2.79) BS03 HDD 1.10.3.- GO:0005886 ... A0QXA8 34330928
    616248 7d5k:A (3.5) BS01 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616249 7d5k:A (3.5) BS02 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616250 7d5k:A (3.5) BS03 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616251 7d5k:B (3.5) BS01 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616252 7d5k:B (3.5) BS02 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616253 7d5k:C (3.5) BS01 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616254 7d5k:C (3.5) BS02 BGC 2.4.1.12 GO:0005886 ... L7NUA2 33638282
    616255 7d5l:A (2.15) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226
    616256 7d5l:A (2.15) BS02 GXO 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226 MOAD: ic50=4.8nM
    616257 7d5l:B (2.15) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226
    616258 7d5l:B (2.15) BS02 GXO 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226 MOAD: ic50=4.8nM
    616259 7d5l:D (2.15) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226
    616260 7d5l:D (2.15) BS02 GXO 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226 MOAD: ic50=4.8nM
    616261 7d5l:E (2.15) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226
    616262 7d5l:E (2.15) BS02 GXO 3.6.4.13 GO:0006508 ... A0A0B4WYC6 33226226 MOAD: ic50=4.8nM
    616263 7d5m:A (1.75) BS01 NAD ? GO:0000166 ... C1DLC3 N/A
    616264 7d5n:A (1.8) BS01 NAI ? GO:0000166 ... C1DLC3 N/A
    616265 7d5n:B (1.8) BS01 NAI ? GO:0000166 ... C1DLC3 N/A
    616266 7d5n:B (1.8) BS02 INS ? GO:0000166 ... C1DLC3 N/A
    616267 7d5o:A (2.69) BS01 TZ0 2.7.10.2 GO:0004672 ... P00523 N/A
    616268 7d5o:B (2.69) BS01 TZ0 2.7.10.2 GO:0004672 ... P00523 N/A
    616269 7d5p:C (3.65) BS01 ZN N/A N/A N/A 34226658
    616270 7d5p:D (3.65) BS01 ZN N/A N/A N/A 34226658
    616271 7d5q:C (3.6) BS01 ZN N/A N/A N/A 34226658
    616272 7d5q:D (3.6) BS01 ZN N/A N/A N/A 34226658
    616273 7d5r:A (3.148) BS01 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616274 7d5r:A (3.148) BS02 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616275 7d5r:A (3.148) BS03 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616276 7d5r:A (3.148) BS04 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616277 7d5r:A (3.148) BS05 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616278 7d5r:B (3.148) BS01 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616279 7d5r:B (3.148) BS02 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616280 7d5r:B (3.148) BS03 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616281 7d5r:B (3.148) BS04 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616282 7d5r:B (3.148) BS05 CA 3.5.3.15 GO:0004668 ... Q9ULW8 33971157
    616283 7d5s:3C (4.6) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    616284 7d5s:3D (4.6) BS01 rna ? GO:0000154 ... Q12460 N/A
    616285 7d5s:3D (4.6) BS02 rna ? GO:0000154 ... Q12460 N/A
    616286 7d5s:3E (4.6) BS01 rna ? GO:0000447 ... Q12499 N/A
    616287 7d5s:3E (4.6) BS02 rna ? GO:0000447 ... Q12499 N/A
    616288 7d5s:3F (4.6) BS01 rna ? GO:0000447 ... Q06506 N/A
    616289 7d5s:3G (4.6) BS01 rna ? GO:0000245 ... P39990 N/A
    616290 7d5s:3H (4.6) BS01 rna ? GO:0000245 ... P39990 N/A
    616291 7d5s:5B (4.6) BS01 rna ? GO:0000447 ... Q08492 N/A
    616292 7d5s:5C (4.6) BS01 rna ? GO:0000447 ... P40055 N/A
    616293 7d5s:5C (4.6) BS02 rna ? GO:0000447 ... P40055 N/A
    616294 7d5s:5C (4.6) BS03 rna ? GO:0000447 ... P40055 N/A
    616295 7d5s:5D (4.6) BS01 rna ? GO:0000447 ... P34247 N/A
    616296 7d5s:5D (4.6) BS02 rna ? GO:0000447 ... P34247 N/A
    616297 7d5s:5D (4.6) BS03 rna ? GO:0000447 ... P34247 N/A
    616298 7d5s:5E (4.6) BS01 rna ? GO:0000447 ... P47083 N/A
    616299 7d5s:5F (4.6) BS01 rna ? GO:0003723 ... P32899 N/A
    616300 7d5s:5F (4.6) BS02 rna ? GO:0003723 ... P32899 N/A
    616301 7d5s:5G (4.6) BS01 rna ? GO:0005515 ... P53941 N/A
    616302 7d5s:5G (4.6) BS02 rna ? GO:0005515 ... P53941 N/A
    616303 7d5s:5H (4.6) BS01 rna ? GO:0000447 ... Q12136 N/A
    616304 7d5s:5I (4.6) BS01 rna ? GO:0000462 ... P33750 N/A
    616305 7d5s:5I (4.6) BS02 rna ? GO:0000462 ... P33750 N/A
    616306 7d5s:5I (4.6) BS03 rna ? GO:0000462 ... P33750 N/A
    616307 7d5s:5J (4.6) BS01 rna ? GO:0000447 ... Q12035 N/A
    616308 7d5s:5J (4.6) BS02 rna ? GO:0000447 ... Q12035 N/A
    616309 7d5s:5K (4.6) BS01 rna ? GO:0000447 ... Q05498 N/A
    616310 7d5s:5K (4.6) BS02 rna ? GO:0000447 ... Q05498 N/A
    616311 7d5s:5K (4.6) BS03 rna ? GO:0000447 ... Q05498 N/A
    616312 7d5s:5K (4.6) BS04 ZN ? GO:0000447 ... Q05498 N/A
    616313 7d5s:A4 (4.6) BS01 rna ? GO:0000462 ... Q06679 N/A
    616314 7d5s:A5 (4.6) BS01 rna ? GO:0000462 ... Q04177 N/A
    616315 7d5s:A9 (4.6) BS01 rna ? GO:0000049 ... P38882 N/A
    616316 7d5s:AE (4.6) BS01 rna ? GO:0000447 ... P42945 N/A
    616317 7d5s:AE (4.6) BS02 rna ? GO:0000447 ... P42945 N/A
    616318 7d5s:AF (4.6) BS01 rna ? GO:0000462 ... Q04305 N/A
    616319 7d5s:AF (4.6) BS02 rna ? GO:0000462 ... Q04305 N/A
    616320 7d5s:AG (4.6) BS01 rna ? GO:0000462 ... Q02931 N/A
    616321 7d5s:AG (4.6) BS02 rna ? GO:0000462 ... Q02931 N/A
    616322 7d5s:B1 (4.6) BS01 rna ? GO:0000028 ... P25635 N/A
    616323 7d5s:B1 (4.6) BS02 rna ? GO:0000028 ... P25635 N/A
    616324 7d5s:B1 (4.6) BS03 rna ? GO:0000028 ... P25635 N/A
    616325 7d5s:B2 (4.6) BS01 rna ? GO:0000447 ... Q12220 N/A
    616326 7d5s:B3 (4.6) BS01 rna ? GO:0000447 ... Q05946 N/A
    616327 7d5s:B6 (4.6) BS01 rna ? GO:0000447 ... Q02354 N/A
    616328 7d5s:B8 (4.6) BS01 rna ? GO:0000292 ... P40362 N/A
    616329 7d5s:B8 (4.6) BS02 rna ? GO:0000292 ... P40362 N/A
    616330 7d5s:BE (4.6) BS01 rna ? GO:0003674 ... Q06078 N/A
    616331 7d5s:BE (4.6) BS02 rna ? GO:0003674 ... Q06078 N/A
    616332 7d5s:RC (4.6) BS01 rna ? GO:0000447 ... P25586 N/A
    616333 7d5s:RD (4.6) BS01 rna ? GO:0000447 ... Q05022 N/A
    616334 7d5s:RE (4.6) BS01 rna ? GO:0000028 ... P53254 N/A
    616335 7d5s:RG (4.6) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    616336 7d5s:RH (4.6) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    616337 7d5s:RI (4.6) BS01 rna ? GO:0000462 ... P36144 N/A
    616338 7d5s:RI (4.6) BS02 rna ? GO:0000462 ... P36144 N/A
    616339 7d5s:RJ (4.6) BS01 rna ? GO:0000462 ... Q08965 N/A
    616340 7d5s:RJ (4.6) BS02 rna ? GO:0000462 ... Q08965 N/A
    616341 7d5s:RJ (4.6) BS03 rna ? GO:0000462 ... Q08965 N/A
    616342 7d5s:RJ (4.6) BS04 GTP ? GO:0000462 ... Q08965 N/A
    616343 7d5s:RJ (4.6) BS05 MG ? GO:0000462 ... Q08965 N/A
    616344 7d5s:RK (4.6) BS01 rna ? GO:0000447 ... Q08096 N/A
    616345 7d5s:RN (4.6) BS01 rna ? GO:0000028 ... Q99207 N/A
    616346 7d5s:RN (4.6) BS02 rna ? GO:0000028 ... Q99207 N/A
    616347 7d5s:RO (4.6) BS01 rna ? GO:0000028 ... Q06512 N/A
    616348 7d5s:RQ (4.6) BS01 rna ? GO:0000447 ... Q04500 N/A
    616349 7d5s:RQ (4.6) BS02 rna ? GO:0000447 ... Q04500 N/A
    616350 7d5s:RS (4.6) BS01 rna ? GO:0000447 ... P38333 N/A
    616351 7d5s:RT (4.6) BS01 rna N/A GO:0003723 ... N/A N/A
    616352 7d5s:RW (4.6) BS01 rna ? GO:0003674 ... P40470 N/A
    616353 7d5s:SG (4.6) BS01 rna ? GO:0000028 ... P26783 N/A
    616354 7d5s:SK (4.6) BS01 rna ? GO:0000462 ... O13516 N/A
    616355 7d5s:SN (4.6) BS01 rna ? GO:0000028 ... P48589 N/A
    616356 7d5s:SO (4.6) BS01 rna ? GO:0000462 ... P05756 N/A
    616357 7d5s:SP (4.6) BS01 rna ? GO:0000028 ... P06367 N/A
    616358 7d5s:SR (4.6) BS01 rna ? GO:0000462 ... P0CX51 N/A
    616359 7d5s:SR (4.6) BS02 rna ? GO:0000462 ... P0CX51 N/A
    616360 7d5s:ST (4.6) BS01 rna ? GO:0000054 ... P0CX55 N/A
    616361 7d5s:SY (4.6) BS01 rna ? GO:0000462 ... P0CX29 N/A
    616362 7d5s:Sd (4.6) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    616363 7d5t:3B (6.0) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    616364 7d5t:3C (6.0) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    616365 7d5t:3D (6.0) BS01 rna ? GO:0000154 ... Q12460 N/A
    616366 7d5t:3D (6.0) BS02 rna ? GO:0000154 ... Q12460 N/A
    616367 7d5t:3E (6.0) BS01 rna ? GO:0000447 ... Q12499 N/A
    616368 7d5t:3F (6.0) BS01 rna ? GO:0000447 ... Q06506 N/A
    616369 7d5t:3G (6.0) BS01 rna ? GO:0000245 ... P39990 N/A
    616370 7d5t:3H (6.0) BS01 rna ? GO:0000245 ... P39990 N/A
    616371 7d5t:5C (6.0) BS01 rna ? GO:0000447 ... P40055 N/A
    616372 7d5t:5C (6.0) BS02 rna ? GO:0000447 ... P40055 N/A
    616373 7d5t:5C (6.0) BS03 rna ? GO:0000447 ... P40055 N/A
    616374 7d5t:5D (6.0) BS01 rna ? GO:0000447 ... P34247 N/A
    616375 7d5t:5E (6.0) BS01 rna ? GO:0000447 ... P47083 N/A
    616376 7d5t:5F (6.0) BS01 rna ? GO:0003723 ... P32899 N/A
    616377 7d5t:5F (6.0) BS02 rna ? GO:0003723 ... P32899 N/A
    616378 7d5t:5G (6.0) BS01 rna ? GO:0005515 ... P53941 N/A
    616379 7d5t:5H (6.0) BS01 rna ? GO:0000447 ... Q12136 N/A
    616380 7d5t:5H (6.0) BS02 rna ? GO:0000447 ... Q12136 N/A
    616381 7d5t:5I (6.0) BS01 rna ? GO:0000462 ... P33750 N/A
    616382 7d5t:5I (6.0) BS02 rna ? GO:0000462 ... P33750 N/A
    616383 7d5t:5I (6.0) BS03 rna ? GO:0000462 ... P33750 N/A
    616384 7d5t:5J (6.0) BS01 rna ? GO:0000447 ... Q12035 N/A
    616385 7d5t:5J (6.0) BS02 rna ? GO:0000447 ... Q12035 N/A
    616386 7d5t:5K (6.0) BS01 rna ? GO:0000447 ... Q05498 N/A
    616387 7d5t:5K (6.0) BS02 ZN ? GO:0000447 ... Q05498 N/A
    616388 7d5t:AG (6.0) BS01 rna ? GO:0000462 ... Q02931 N/A
    616389 7d5t:B1 (6.0) BS01 rna ? GO:0000028 ... P25635 N/A
    616390 7d5t:B2 (6.0) BS01 rna ? GO:0000447 ... Q12220 N/A
    616391 7d5t:B3 (6.0) BS01 rna ? GO:0000447 ... Q05946 N/A
    616392 7d5t:B6 (6.0) BS01 rna ? GO:0000447 ... Q02354 N/A
    616393 7d5t:B8 (6.0) BS01 rna ? GO:0000292 ... P40362 N/A
    616394 7d5t:RE (6.0) BS01 rna ? GO:0000028 ... P53254 N/A
    616395 7d5t:RF (6.0) BS01 rna ? GO:0000028 ... P25368 N/A
    616396 7d5t:RJ (6.0) BS01 rna ? GO:0000462 ... Q08965 N/A
    616397 7d5t:RJ (6.0) BS02 rna ? GO:0000462 ... Q08965 N/A
    616398 7d5t:RJ (6.0) BS03 GTP ? GO:0000462 ... Q08965 N/A
    616399 7d5t:RK (6.0) BS01 rna ? GO:0000447 ... Q08096 N/A
    616400 7d5t:RN (6.0) BS01 rna ? GO:0000028 ... Q99207 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).