SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    616401 7d5t:RN (6.0) BS02 rna ? GO:0000028 ... Q99207 N/A
    616402 7d5t:RP (6.0) BS01 rna ? GO:0000447 ... P35194 N/A
    616403 7d5t:RQ (6.0) BS01 rna ? GO:0000447 ... Q04500 N/A
    616404 7d5t:RQ (6.0) BS02 rna ? GO:0000447 ... Q04500 N/A
    616405 7d5t:RT (6.0) BS01 rna N/A GO:0003723 ... N/A N/A
    616406 7d5t:RZ (6.0) BS01 ADP 3.6.4.13 GO:0000462 ... Q04217 N/A
    616407 7d5t:SC (6.0) BS01 rna ? GO:0000462 ... P33442 N/A
    616408 7d5t:SF (6.0) BS01 rna ? GO:0002181 ... P0CX35 N/A
    616409 7d5t:SG (6.0) BS01 rna ? GO:0000028 ... P26783 N/A
    616410 7d5t:SH (6.0) BS01 rna ? GO:0000462 ... P0CX37 N/A
    616411 7d5t:SI (6.0) BS01 rna ? GO:0002181 ... P26786 N/A
    616412 7d5t:SJ (6.0) BS01 rna ? GO:0000462 ... P0CX39 N/A
    616413 7d5t:SK (6.0) BS01 rna ? GO:0000462 ... O13516 N/A
    616414 7d5t:SM (6.0) BS01 rna ? GO:0000028 ... P0CX47 N/A
    616415 7d5t:SO (6.0) BS01 rna ? GO:0000462 ... P05756 N/A
    616416 7d5t:SP (6.0) BS01 rna ? GO:0000028 ... P06367 N/A
    616417 7d5t:SR (6.0) BS01 rna ? GO:0000462 ... P0CX51 N/A
    616418 7d5t:SX (6.0) BS01 rna ? GO:0002181 ... Q3E7Y3 N/A
    616419 7d5t:SY (6.0) BS01 rna ? GO:0000462 ... P0CX29 N/A
    616420 7d5t:SZ (6.0) BS01 rna ? GO:0000462 ... P0CX31 N/A
    616421 7d5t:Sc (6.0) BS01 rna ? GO:0000028 ... P35997 N/A
    616422 7d5t:Sc (6.0) BS02 ZN ? GO:0000028 ... P35997 N/A
    616423 7d5t:Sd (6.0) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    616424 7d5u:A (2.04) BS01 GX6 3.4.23.45 GO:0004190 ... Q9Y5Z0 33719429
    616425 7d5w:A (1.84) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616426 7d5w:A (1.84) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616427 7d5w:A (1.84) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    616428 7d5w:A (1.84) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    616429 7d5w:B (1.84) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 34274318
    616430 7d5w:B (1.84) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 34274318
    616431 7d5w:C (1.84) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    616432 7d5w:D (1.84) BS01 DMU ? GO:0006123 ... P00423 34274318
    616433 7d5w:F (1.84) BS01 ZN ? GO:0005740 ... P00428 34274318
    616434 7d5w:J (1.84) BS01 DMU ? GO:0006123 ... P07470 34274318
    616435 7d5w:J (1.84) BS02 DMU ? GO:0006123 ... P07470 34274318
    616436 7d5w:K (1.84) BS01 DMU ? GO:0006123 ... P13183 34274318
    616437 7d5w:K (1.84) BS02 DMU ? GO:0006123 ... P13183 34274318
    616438 7d5w:L (1.84) BS01 DMU ? GO:0006123 ... P00430 34274318
    616439 7d5w:M (1.84) BS01 DMU ? GO:0006123 ... P10175 34274318
    616440 7d5w:N (1.84) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616441 7d5w:N (1.84) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616442 7d5w:N (1.84) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    616443 7d5w:N (1.84) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    616444 7d5w:O (1.84) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 34274318
    616445 7d5w:O (1.84) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 34274318
    616446 7d5w:O (1.84) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 34274318
    616447 7d5w:P (1.84) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    616448 7d5w:P (1.84) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    616449 7d5w:P (1.84) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    616450 7d5w:Q (1.84) BS01 DMU ? GO:0006123 ... P00423 34274318
    616451 7d5w:S (1.84) BS01 ZN ? GO:0005740 ... P00428 34274318
    616452 7d5w:W (1.84) BS01 DMU ? GO:0006123 ... P07470 34274318
    616453 7d5w:W (1.84) BS02 DMU ? GO:0006123 ... P07470 34274318
    616454 7d5w:Z (1.84) BS01 DMU ? GO:0006123 ... P10175 34274318
    616455 7d5x:A (1.74) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616456 7d5x:A (1.74) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616457 7d5x:A (1.74) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    616458 7d5x:A (1.74) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    616459 7d5x:A (1.74) BS05 OXY 7.1.1.9 GO:0004129 ... P00396 34274318
    616460 7d5x:B (1.74) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 34274318
    616461 7d5x:B (1.74) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 34274318
    616462 7d5x:C (1.74) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    616463 7d5x:D (1.74) BS01 DMU ? GO:0006123 ... P00423 34274318
    616464 7d5x:F (1.74) BS01 ZN ? GO:0005740 ... P00428 34274318
    616465 7d5x:J (1.74) BS01 DMU ? GO:0006123 ... P07470 34274318
    616466 7d5x:J (1.74) BS02 DMU ? GO:0006123 ... P07470 34274318
    616467 7d5x:L (1.74) BS01 DMU ? GO:0006123 ... P00430 34274318
    616468 7d5x:M (1.74) BS01 DMU ? GO:0006123 ... P10175 34274318
    616469 7d5x:N (1.74) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616470 7d5x:N (1.74) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    616471 7d5x:N (1.74) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    616472 7d5x:N (1.74) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    616473 7d5x:N (1.74) BS05 OXY 7.1.1.9 GO:0004129 ... P00396 34274318
    616474 7d5x:O (1.74) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 34274318
    616475 7d5x:O (1.74) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 34274318
    616476 7d5x:P (1.74) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    616477 7d5x:Q (1.74) BS01 DMU ? GO:0006123 ... P00423 34274318
    616478 7d5x:S (1.74) BS01 ZN ? GO:0005740 ... P00428 34274318
    616479 7d5x:W (1.74) BS01 DMU ? GO:0006123 ... P07470 34274318
    616480 7d5x:W (1.74) BS02 DMU ? GO:0006123 ... P07470 34274318
    616481 7d5x:Z (1.74) BS01 DMU ? GO:0006123 ... P10175 34274318
    616482 7d62:A (1.9) BS01 MN ? GO:0003674 ... Q9KLZ6 N/A
    616483 7d62:B (1.9) BS01 MN ? GO:0003674 ... Q9KLZ6 N/A
    616484 7d63:3C (12.3) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    616485 7d63:3D (12.3) BS01 rna ? GO:0000154 ... Q12460 N/A
    616486 7d63:3D (12.3) BS02 rna ? GO:0000154 ... Q12460 N/A
    616487 7d63:3E (12.3) BS01 rna ? GO:0000447 ... Q12499 N/A
    616488 7d63:3E (12.3) BS02 rna ? GO:0000447 ... Q12499 N/A
    616489 7d63:3F (12.3) BS01 rna ? GO:0000447 ... Q06506 N/A
    616490 7d63:3G (12.3) BS01 rna ? GO:0000245 ... P39990 N/A
    616491 7d63:3H (12.3) BS01 rna ? GO:0000245 ... P39990 N/A
    616492 7d63:5C (12.3) BS01 rna ? GO:0000447 ... P40055 N/A
    616493 7d63:5C (12.3) BS02 rna ? GO:0000447 ... P40055 N/A
    616494 7d63:5C (12.3) BS03 rna ? GO:0000447 ... P40055 N/A
    616495 7d63:5D (12.3) BS01 rna ? GO:0000447 ... P34247 N/A
    616496 7d63:5D (12.3) BS02 rna ? GO:0000447 ... P34247 N/A
    616497 7d63:5E (12.3) BS01 rna ? GO:0000447 ... P47083 N/A
    616498 7d63:5F (12.3) BS01 rna ? GO:0003723 ... P32899 N/A
    616499 7d63:5G (12.3) BS01 rna ? GO:0005515 ... P53941 N/A
    616500 7d63:5H (12.3) BS01 rna ? GO:0000447 ... Q12136 N/A
    616501 7d63:5I (12.3) BS01 rna ? GO:0000462 ... P33750 N/A
    616502 7d63:5I (12.3) BS02 rna ? GO:0000462 ... P33750 N/A
    616503 7d63:5I (12.3) BS03 rna ? GO:0000462 ... P33750 N/A
    616504 7d63:5J (12.3) BS01 rna ? GO:0000447 ... Q12035 N/A
    616505 7d63:5J (12.3) BS02 rna ? GO:0000447 ... Q12035 N/A
    616506 7d63:5K (12.3) BS01 rna ? GO:0000447 ... Q05498 N/A
    616507 7d63:5K (12.3) BS02 rna ? GO:0000447 ... Q05498 N/A
    616508 7d63:5K (12.3) BS03 ZN ? GO:0000447 ... Q05498 N/A
    616509 7d63:A4 (12.3) BS01 rna ? GO:0000462 ... Q06679 N/A
    616510 7d63:A9 (12.3) BS01 rna ? GO:0000049 ... P38882 N/A
    616511 7d63:AE (12.3) BS01 rna ? GO:0000447 ... P42945 N/A
    616512 7d63:AE (12.3) BS02 rna ? GO:0000447 ... P42945 N/A
    616513 7d63:AF (12.3) BS01 rna ? GO:0000462 ... Q04305 N/A
    616514 7d63:AF (12.3) BS02 rna ? GO:0000462 ... Q04305 N/A
    616515 7d63:AG (12.3) BS01 rna ? GO:0000462 ... Q02931 N/A
    616516 7d63:AG (12.3) BS02 rna ? GO:0000462 ... Q02931 N/A
    616517 7d63:B1 (12.3) BS01 rna ? GO:0000028 ... P25635 N/A
    616518 7d63:B1 (12.3) BS02 rna ? GO:0000028 ... P25635 N/A
    616519 7d63:B1 (12.3) BS03 rna ? GO:0000028 ... P25635 N/A
    616520 7d63:B1 (12.3) BS04 peptide ? GO:0000028 ... P25635 N/A
    616521 7d63:B2 (12.3) BS01 rna ? GO:0000447 ... Q12220 N/A
    616522 7d63:B3 (12.3) BS01 rna ? GO:0000447 ... Q05946 N/A
    616523 7d63:B6 (12.3) BS01 rna ? GO:0000447 ... Q02354 N/A
    616524 7d63:B8 (12.3) BS01 rna ? GO:0000292 ... P40362 N/A
    616525 7d63:B8 (12.3) BS02 rna ? GO:0000292 ... P40362 N/A
    616526 7d63:BE (12.3) BS01 rna ? GO:0003674 ... Q06078 N/A
    616527 7d63:BE (12.3) BS02 rna ? GO:0003674 ... Q06078 N/A
    616528 7d63:RA (12.3) BS01 rna ? GO:0000462 ... P48234 N/A
    616529 7d63:RB (12.3) BS01 rna ? GO:0000447 ... P40079 N/A
    616530 7d63:RE (12.3) BS01 rna ? GO:0000028 ... P53254 N/A
    616531 7d63:RE (12.3) BS02 peptide ? GO:0000028 ... P53254 N/A
    616532 7d63:RF (12.3) BS01 rna ? GO:0000028 ... P25368 N/A
    616533 7d63:RG (12.3) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    616534 7d63:RH (12.3) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    616535 7d63:RJ (12.3) BS01 rna ? GO:0000462 ... Q08965 N/A
    616536 7d63:RJ (12.3) BS02 rna ? GO:0000462 ... Q08965 N/A
    616537 7d63:RJ (12.3) BS03 GTP ? GO:0000462 ... Q08965 N/A
    616538 7d63:RJ (12.3) BS04 MG ? GO:0000462 ... Q08965 N/A
    616539 7d63:RK (12.3) BS01 rna ? GO:0000447 ... Q08096 N/A
    616540 7d63:RL (12.3) BS01 rna 2.3.1.- GO:0000049 ... P53914 N/A
    616541 7d63:RN (12.3) BS01 rna ? GO:0000028 ... Q99207 N/A
    616542 7d63:RN (12.3) BS02 rna ? GO:0000028 ... Q99207 N/A
    616543 7d63:RP (12.3) BS01 rna ? GO:0000447 ... P35194 N/A
    616544 7d63:RP (12.3) BS02 rna ? GO:0000447 ... P35194 N/A
    616545 7d63:RQ (12.3) BS01 rna ? GO:0000447 ... Q04500 N/A
    616546 7d63:RQ (12.3) BS02 rna ? GO:0000447 ... Q04500 N/A
    616547 7d63:RS (12.3) BS01 rna ? GO:0000447 ... P38333 N/A
    616548 7d63:RT (12.3) BS01 rna N/A GO:0003723 ... N/A N/A
    616549 7d63:RY (12.3) BS01 rna ? GO:0000462 ... Q06631 N/A
    616550 7d63:RZ (12.3) BS01 ADP 3.6.4.13 GO:0000462 ... Q04217 N/A
    616551 7d63:SC (12.3) BS01 rna ? GO:0000462 ... P33442 N/A
    616552 7d63:SF (12.3) BS01 rna ? GO:0002181 ... P0CX35 N/A
    616553 7d63:SG (12.3) BS01 rna ? GO:0000028 ... P26783 N/A
    616554 7d63:SH (12.3) BS01 rna ? GO:0000462 ... P0CX37 N/A
    616555 7d63:SI (12.3) BS01 rna ? GO:0002181 ... P26786 N/A
    616556 7d63:SJ (12.3) BS01 rna ? GO:0000462 ... P0CX39 N/A
    616557 7d63:SK (12.3) BS01 rna ? GO:0000462 ... O13516 N/A
    616558 7d63:SM (12.3) BS01 rna ? GO:0000028 ... P0CX47 N/A
    616559 7d63:SO (12.3) BS01 rna ? GO:0000462 ... P05756 N/A
    616560 7d63:SP (12.3) BS01 rna ? GO:0000028 ... P06367 N/A
    616561 7d63:SR (12.3) BS01 rna ? GO:0000462 ... P0CX51 N/A
    616562 7d63:ST (12.3) BS01 rna ? GO:0000054 ... P0CX55 N/A
    616563 7d63:SU (12.3) BS01 rna ? GO:0000028 ... P07280 N/A
    616564 7d63:SX (12.3) BS01 rna ? GO:0002181 ... Q3E7Y3 N/A
    616565 7d63:SY (12.3) BS01 rna ? GO:0000462 ... P0CX29 N/A
    616566 7d63:SZ (12.3) BS01 rna ? GO:0000462 ... P0CX31 N/A
    616567 7d63:Sc (12.3) BS01 rna ? GO:0000028 ... P35997 N/A
    616568 7d63:Sc (12.3) BS02 ZN ? GO:0000028 ... P35997 N/A
    616569 7d63:Sd (12.3) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    616570 7d64:A (2.45012) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35255411
    616571 7d64:A (2.45012) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35255411
    616572 7d69:A (3.57) BS01 dna ? GO:0000786 ... E2RU29 34352093
    616573 7d69:A (3.57) BS02 dna ? GO:0000786 ... E2RU29 34352093
    616574 7d69:B (3.57) BS01 dna ? GO:0000786 ... A8BUJ9 34352093
    616575 7d69:B (3.57) BS02 dna ? GO:0000786 ... A8BUJ9 34352093
    616576 7d69:C (3.57) BS01 dna ? GO:0000786 ... A8BHS7 34352093
    616577 7d69:C (3.57) BS02 dna ? GO:0000786 ... A8BHS7 34352093
    616578 7d69:D (3.57) BS01 dna ? GO:0000786 ... A8BI78 34352093
    616579 7d69:E (3.57) BS01 dna ? GO:0000786 ... E2RU29 34352093
    616580 7d69:E (3.57) BS02 dna ? GO:0000786 ... E2RU29 34352093
    616581 7d69:F (3.57) BS01 dna ? GO:0000786 ... A8BUJ9 34352093
    616582 7d69:F (3.57) BS02 dna ? GO:0000786 ... A8BUJ9 34352093
    616583 7d69:G (3.57) BS01 dna ? GO:0000786 ... A8BHS7 34352093
    616584 7d69:G (3.57) BS02 dna ? GO:0000786 ... A8BHS7 34352093
    616585 7d69:H (3.57) BS01 dna ? GO:0000786 ... A8BI78 34352093
    616586 7d69:H (3.57) BS02 dna ? GO:0000786 ... A8BI78 34352093
    616587 7d6a:A (1.7) BS01 ZN 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    616588 7d6a:B (1.7) BS01 ZN 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    616589 7d6b:A (2.1) BS01 LGC 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    616590 7d6b:A (2.1) BS02 ZN 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    616591 7d6b:B (2.1) BS01 LGC 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    616592 7d6b:B (2.1) BS02 ZN 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    616593 7d6f:A (3.001) BS01 peptide ? N/A Q9WVQ1 34371146
    616594 7d6g:A (1.65) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    616595 7d6h:A (1.6) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0006508 ... P0DTC1 33979649
    616596 7d6j:A (3.29) BS01 R75 ? GO:0003677 ... P02768 33478218
    616597 7d6j:A (3.29) BS02 R75 ? GO:0003677 ... P02768 33478218
    616598 7d6j:A (3.29) BS03 R75 ? GO:0003677 ... P02768 33478218
    616599 7d6j:A (3.29) BS04 R75 ? GO:0003677 ... P02768 33478218
    616600 7d6j:B (3.29) BS01 R75 ? GO:0003677 ... P02768 33478218

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).