SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    61601 1wrl:A (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    61602 1wrl:A (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    61603 1wrl:B (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    61604 1wrl:B (2.6) BS02 CA ? GO:0005509 ... P63316 N/A
    61605 1wrl:B (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    61606 1wrl:B (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    61607 1wrl:C (2.6) BS01 CA ? GO:0005509 ... P63316 N/A
    61608 1wrl:C (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    61609 1wrl:C (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    61610 1wrl:C (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    61611 1wrl:D (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    61612 1wrl:D (2.6) BS02 CA ? GO:0005509 ... P63316 N/A
    61613 1wrl:D (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    61614 1wrl:D (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    61615 1wrl:E (2.6) BS01 CA ? GO:0005509 ... P63316 N/A
    61616 1wrl:E (2.6) BS02 TFP ? GO:0005509 ... P63316 N/A
    61617 1wrl:E (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    61618 1wrl:E (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    61619 1wrl:F (2.6) BS01 TFP ? GO:0005509 ... P63316 N/A
    61620 1wrl:F (2.6) BS02 CA ? GO:0005509 ... P63316 N/A
    61621 1wrl:F (2.6) BS03 TFP ? GO:0005509 ... P63316 N/A
    61622 1wrl:F (2.6) BS04 TFP ? GO:0005509 ... P63316 N/A
    61623 1wrn:A (2.3) BS01 MN ? GO:0003729 ... P10943 16192572
    61624 1wrn:A (2.3) BS02 HIS ? GO:0003729 ... P10943 16192572
    61625 1wrn:A (2.3) BS03 HIS ? GO:0003729 ... P10943 16192572
    61626 1wrn:B (2.3) BS01 MN ? GO:0003729 ... P10943 16192572
    61627 1wrn:B (2.3) BS02 HIS ? GO:0003729 ... P10943 16192572
    61628 1wrn:B (2.3) BS03 HIS ? GO:0003729 ... P10943 16192572
    61629 1wrn:C (2.3) BS01 HIS ? GO:0003729 ... P10943 16192572
    61630 1wrn:C (2.3) BS02 MN ? GO:0003729 ... P10943 16192572
    61631 1wrn:C (2.3) BS03 HIS ? GO:0003729 ... P10943 16192572
    61632 1wro:A (2.35) BS01 HIS ? GO:0003729 ... P10943 16192572
    61633 1wro:A (2.35) BS02 HIS ? GO:0003729 ... P10943 16192572
    61634 1wro:B (2.35) BS01 HIS ? GO:0003729 ... P10943 16192572
    61635 1wro:B (2.35) BS02 HIS ? GO:0003729 ... P10943 16192572
    61636 1wro:C (2.35) BS01 HIS ? GO:0003729 ... P10943 16192572
    61637 1wro:C (2.35) BS02 HIS ? GO:0003729 ... P10943 16192572
    61638 1wrp:R (2.2) BS01 TRP ? GO:0003676 ... P0A881 3375234
    61639 1wrq:A (2.2) BS01 rna ? GO:0003729 ... P10943 N/A
    61640 1wrq:A (2.2) BS02 HIS ? GO:0003729 ... P10943 N/A
    61641 1wrq:B (2.2) BS01 rna ? GO:0003729 ... P10943 N/A
    61642 1wrq:B (2.2) BS02 HIS ? GO:0003729 ... P10943 N/A
    61643 1wrr:A (1.64) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    61644 1wrs:R (-1.00) BS01 TRP ? GO:0003676 ... P0A881 8433368
    61645 1wrs:R (-1.00) BS02 TRP ? GO:0003676 ... P0A881 8433368
    61646 1wrs:S (-1.00) BS01 TRP ? GO:0003676 ... P0A881 8433368
    61647 1wrs:S (-1.00) BS02 TRP ? GO:0003676 ... P0A881 8433368
    61648 1wrv:A (1.5) BS01 PLP 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    61649 1wrv:B (1.5) BS01 PLP 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    61650 1wrv:C (1.5) BS01 PLP 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    61651 1wrz:A (2.0) BS01 peptide ? GO:0000922 ... P0DP23 N/A
    61652 1wrz:A (2.0) BS02 CA ? GO:0000922 ... P0DP23 N/A
    61653 1wrz:A (2.0) BS03 CA ? GO:0000922 ... P0DP23 N/A
    61654 1wrz:A (2.0) BS04 CA ? GO:0000922 ... P0DP23 N/A
    61655 1wrz:A (2.0) BS05 CA ? GO:0000922 ... P0DP23 N/A
    61656 1ws1:A (2.0) BS01 BB2 3.5.1.88 GO:0006412 ... Q819U0 16049914 MOAD: Ki=0.28nM
    61657 1ws2:A (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    61658 1ws2:A (2.7) BS02 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    61659 1ws2:B (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    61660 1ws2:C (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    61661 1ws2:C (2.7) BS02 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    61662 1ws2:D (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    61663 1ws3:A (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    61664 1ws3:A (3.2) BS02 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    61665 1ws3:B (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    61666 1ws3:C (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    61667 1ws3:D (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    61668 1ws4:A (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61669 1ws4:A (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61670 1ws4:A (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61671 1ws4:A (1.9) BS04 GYP ? GO:0019862 ... P18670 15733927 MOAD: Kd=1mM
    61672 1ws4:C (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61673 1ws4:C (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61674 1ws4:C (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61675 1ws4:C (1.9) BS04 GYP ? GO:0019862 ... P18670 15733927 MOAD: Kd=1mM
    61676 1ws4:E (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61677 1ws4:E (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61678 1ws4:E (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61679 1ws4:E (1.9) BS04 AMG ? GO:0019862 ... P18670 15733927
    61680 1ws4:G (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61681 1ws4:G (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61682 1ws4:G (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61683 1ws4:G (1.9) BS04 GYP ? GO:0019862 ... P18670 15733927 MOAD: Kd=1mM
    61684 1ws5:A (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61685 1ws5:A (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61686 1ws5:A (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61687 1ws5:A (1.9) BS04 MMA ? GO:0019862 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    61688 1ws5:C (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61689 1ws5:C (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61690 1ws5:C (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61691 1ws5:C (1.9) BS04 MMA ? GO:0019862 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    61692 1ws5:E (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61693 1ws5:E (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61694 1ws5:E (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61695 1ws5:E (1.9) BS04 MMA ? GO:0019862 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    61696 1ws5:G (1.9) BS01 peptide ? GO:0019862 ... P18670 15733927
    61697 1ws5:G (1.9) BS02 peptide ? GO:0019862 ... P18670 15733927
    61698 1ws5:G (1.9) BS03 peptide ? GO:0019862 ... P18670 15733927
    61699 1ws5:G (1.9) BS04 MMA ? GO:0019862 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    61700 1ws7:A (1.9) BS01 CU1 ? GO:0005886 ... P80728 15858169
    61701 1ws7:B (1.9) BS01 CU1 ? GO:0005886 ... P80728 15858169
    61702 1ws7:C (1.9) BS01 CU1 ? GO:0005886 ... P80728 15858169
    61703 1ws7:D (1.9) BS01 CU1 ? GO:0005886 ... P80728 15858169
    61704 1ws8:A (1.6) BS01 CU ? GO:0005886 ... P80728 15858169
    61705 1ws8:B (1.6) BS01 CU ? GO:0005886 ... P80728 15858169
    61706 1ws8:C (1.6) BS01 CU ? GO:0005886 ... P80728 15858169
    61707 1ws8:D (1.6) BS01 CU ? GO:0005886 ... P80728 15858169
    61708 1wsb:A (1.8) BS01 FMN ? GO:0009055 ... P00323 19118653
    61709 1wsd:A (1.5) BS01 CA 3.4.21.- GO:0004252 ... Q99405 9278275
    61710 1wse:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61711 1wse:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61712 1wsf:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61713 1wsf:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61714 1wsf:D (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61715 1wsg:A (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61716 1wsg:D (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    61717 1wss:H (2.6) BS01 CA 3.4.21.21 GO:0004252 ... P08709 16510984
    61718 1wss:H (2.6) BS02 3CB 3.4.21.21 GO:0004252 ... P08709 16510984
    61719 1wss:L (2.6) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 16510984
    61720 1wss:L (2.6) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 16510984
    61721 1wss:L (2.6) BS03 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61722 1wss:L (2.6) BS04 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61723 1wss:L (2.6) BS05 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61724 1wss:L (2.6) BS06 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61725 1wss:L (2.6) BS07 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61726 1wss:L (2.6) BS08 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61727 1wss:L (2.6) BS09 CA 3.4.21.21 GO:0005509 ... P08709 16510984
    61728 1wst:A (1.95) BS01 PLP 2.6.1.- GO:0008483 ... Q9V2W5 N/A
    61729 1wsu:A (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870
    61730 1wsu:B (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870
    61731 1wsu:C (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870
    61732 1wsv:A (2.6) BS01 THH 2.1.2.10 GO:0004047 ... P48728 16051266
    61733 1wsv:B (2.6) BS01 THH 2.1.2.10 GO:0004047 ... P48728 16051266
    61734 1wsw:A (1.69) BS01 FMN ? GO:0009055 ... P00323 19118653
    61735 1wt1:A (1.55) BS01 FUC 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 15475562
    61736 1wt1:A (1.55) BS02 UDP 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 15475562
    61737 1wt2:A (1.9) BS01 DLG 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 15475562
    61738 1wt2:A (1.9) BS02 UDP 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 15475562
    61739 1wt3:A (1.8) BS01 UDP 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 15475562
    61740 1wt9:A (2.01) BS01 CA ? GO:0005576 ... Q9IAM1 N/A
    61741 1wt9:B (2.01) BS01 CA ? GO:0005576 ... Q9DEF8 N/A
    61742 1wta:A (1.78) BS01 ADE 2.4.2.28 GO:0003824 ... Q9YAQ8 N/A
    61743 1wtb:A (-1.00) BS01 dna ? GO:0003676 ... Q14103 15734733
    61744 1wtc:A (1.9) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18
    GO:0000287 ... O59791 19640845
    61745 1wtc:A (1.9) BS02 PLP 4.3.1.17
    4.3.1.18
    5.1.1.18
    GO:0000287 ... O59791 19640845
    61746 1wtc:A (1.9) BS03 ACP 4.3.1.17
    4.3.1.18
    5.1.1.18
    GO:0000287 ... O59791 19640845
    61747 1wte:A (1.9) BS01 dna 3.1.21.4 N/A Q9RPJ3 15590682
    61748 1wte:A (1.9) BS02 dna 3.1.21.4 N/A Q9RPJ3 15590682
    61749 1wte:B (1.9) BS01 dna 3.1.21.4 N/A Q9RPJ3 15590682
    61750 1wte:B (1.9) BS02 dna 3.1.21.4 N/A Q9RPJ3 15590682
    61751 1wtf:A (1.6) BS01 COA ? GO:0005506 ... P10245 16156653
    61752 1wtf:A (1.6) BS02 F3S ? GO:0005506 ... P10245 16156653
    61753 1wtf:B (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    61754 1wtf:C (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    61755 1wtf:D (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    61756 1wtg:H (2.2) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15607748
    61757 1wtg:H (2.2) BS02 3BP 3.4.21.21 GO:0004252 ... P08709 15607748 MOAD: ic50=93nM
    BindingDB: IC50=93nM
    61758 1wtg:L (2.2) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 15607748
    61759 1wtg:L (2.2) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15607748
    61760 1wtg:L (2.2) BS03 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61761 1wtg:L (2.2) BS04 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61762 1wtg:L (2.2) BS05 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61763 1wtg:L (2.2) BS06 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61764 1wtg:L (2.2) BS07 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61765 1wtg:L (2.2) BS08 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61766 1wtg:L (2.2) BS09 CA 3.4.21.21 GO:0005509 ... P08709 15607748
    61767 1wto:A (1.5) BS01 dna ? GO:0003677 ... P13123 15653643
    61768 1wto:A (1.5) BS02 dna ? GO:0003677 ... P13123 15653643
    61769 1wtp:A (1.9) BS01 dna ? GO:0003677 ... P13123 15653643
    61770 1wtp:A (1.9) BS02 dna ? GO:0003677 ... P13123 15653643
    61771 1wtp:A (1.9) BS03 dna ? GO:0003677 ... P13123 15653643
    61772 1wtp:B (1.9) BS01 dna ? GO:0003677 ... P13123 15653643
    61773 1wtp:B (1.9) BS02 dna ? GO:0003677 ... P13123 15653643
    61774 1wtq:A (1.7) BS01 dna ? GO:0003677 ... P13123 15653643
    61775 1wtq:A (1.7) BS02 dna ? GO:0003677 ... P13123 15653643
    61776 1wtr:A (1.8) BS01 dna ? GO:0003677 ... P13123 15653643
    61777 1wtr:A (1.8) BS02 dna ? GO:0003677 ... P13123 15653643
    61778 1wtv:A (1.6) BS01 dna ? GO:0003677 ... P13123 15653643
    61779 1wtv:A (1.6) BS02 dna ? GO:0003677 ... P13123 15653643
    61780 1wtw:A (2.2) BS01 dna ? GO:0003677 ... P13123 15653643
    61781 1wtw:A (2.2) BS02 dna ? GO:0003677 ... P13123 15653643
    61782 1wtx:A (2.2) BS01 dna ? GO:0003677 ... P13123 15653643
    61783 1wtx:A (2.2) BS02 dna ? GO:0003677 ... P13123 15653643
    61784 1wu1:A (2.3) BS01 CA 3.4.21.6 GO:0004252 ... P00742 15911309
    61785 1wu1:A (2.3) BS02 CA 3.4.21.6 GO:0004252 ... P00742 15911309
    61786 1wu1:A (2.3) BS03 D91 3.4.21.6 GO:0004252 ... P00742 15911309 MOAD: ic50=18nM
    61787 1wu5:A (2.2) BS01 XYP 3.2.1.156 GO:0004553 ... Q9KB30 15718242
    61788 1wu6:A (1.45) BS01 XYP 3.2.1.156 GO:0004553 ... Q9KB30 15718242
    61789 1wu8:A (2.6) BS01 ADN 3.13.2.3 N/A O58212 N/A
    61790 1wu8:A (2.6) BS02 ADN 3.13.2.3 N/A O58212 N/A
    61791 1wu8:B (2.6) BS01 ADN 3.13.2.3 N/A O58212 N/A
    61792 1wu8:B (2.6) BS02 ADN 3.13.2.3 N/A O58212 N/A
    61793 1wu8:C (2.6) BS01 ADN 3.13.2.3 N/A O58212 N/A
    61794 1wu8:C (2.6) BS02 ADN 3.13.2.3 N/A O58212 N/A
    61795 1wua:A (1.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 16406066
    61796 1wua:A (1.45) BS02 AP8 3.6.4.- GO:0000287 ... P68135 16406066
    61797 1wub:A (1.65) BS01 OTP ? N/A P83815 15741337
    61798 1wuf:A (2.9) BS01 MG 4.2.1.113
    5.1.1.-
    GO:0000287 ... Q927X3 24872444
    61799 1wuf:B (2.9) BS01 MG 4.2.1.113
    5.1.1.-
    GO:0000287 ... Q927X3 24872444
    61800 1wug:A (-1.00) BS01 NP1 2.3.1.48
    2.3.1.57
    GO:0004402 ... Q92831 15724976 BindingDB: IC50=1600nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).