SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    622801 7e87:A (3.4) BS01 peptide ? GO:0005216 ... Q9NZV8 34552243
    622802 7e87:B (3.4) BS01 peptide ? GO:0005216 ... Q9NZV8 34552243
    622803 7e87:C (3.4) BS01 peptide ? GO:0005216 ... Q9NZV8 34552243
    622804 7e87:D (3.4) BS01 peptide ? GO:0005216 ... Q9NZV8 34552243
    622805 7e8d:A (2.8) BS01 dna ? GO:0000786 ... P68431 34782608
    622806 7e8d:A (2.8) BS02 dna ? GO:0000786 ... P68431 34782608
    622807 7e8d:B (2.8) BS01 dna ? GO:0000781 ... P62805 34782608
    622808 7e8d:B (2.8) BS02 dna ? GO:0000781 ... P62805 34782608
    622809 7e8d:C (2.8) BS01 dna ? GO:0000786 ... P0C0S8 34782608
    622810 7e8d:C (2.8) BS02 dna ? GO:0000786 ... P0C0S8 34782608
    622811 7e8d:D (2.8) BS01 dna ? GO:0000786 ... P06899 34782608
    622812 7e8d:D (2.8) BS02 dna ? GO:0000786 ... P06899 34782608
    622813 7e8d:E (2.8) BS01 dna ? GO:0000786 ... P68431 34782608
    622814 7e8d:E (2.8) BS02 dna ? GO:0000786 ... P68431 34782608
    622815 7e8d:F (2.8) BS01 dna ? GO:0000781 ... P62805 34782608
    622816 7e8d:F (2.8) BS02 dna ? GO:0000781 ... P62805 34782608
    622817 7e8d:G (2.8) BS01 dna ? GO:0000786 ... P0C0S8 34782608
    622818 7e8d:G (2.8) BS02 dna ? GO:0000786 ... P0C0S8 34782608
    622819 7e8d:H (2.8) BS01 dna ? GO:0000786 ... P06899 34782608
    622820 7e8d:H (2.8) BS02 dna ? GO:0000786 ... P06899 34782608
    622821 7e8d:K (2.8) BS01 dna 2.1.1.357 GO:0005634 ... O96028 34782608
    622822 7e8d:K (2.8) BS02 ZN 2.1.1.357 GO:0005634 ... O96028 34782608
    622823 7e8d:K (2.8) BS03 ZN 2.1.1.357 GO:0005634 ... O96028 34782608
    622824 7e8d:K (2.8) BS04 ZN 2.1.1.357 GO:0005634 ... O96028 34782608
    622825 7e8d:K (2.8) BS05 SFG 2.1.1.357 GO:0005634 ... O96028 34782608
    622826 7e8e:B (3.9) BS01 peptide ? GO:0005216 ... Q9NZV8 34552243
    622827 7e8e:D (3.9) BS01 peptide ? GO:0005216 ... Q9NZV8 34552243
    622828 7e8i:A (3.1) BS01 dna ? GO:0000786 ... P84233 34102105
    622829 7e8i:A (3.1) BS02 dna ? GO:0000786 ... P84233 34102105
    622830 7e8i:B (3.1) BS01 dna ? GO:0000786 ... P62799 34102105
    622831 7e8i:B (3.1) BS02 dna ? GO:0000786 ... P62799 34102105
    622832 7e8i:C (3.1) BS01 dna ? GO:0000786 ... P06897 34102105
    622833 7e8i:C (3.1) BS02 dna ? GO:0000786 ... P06897 34102105
    622834 7e8i:D (3.1) BS01 dna ? GO:0000786 ... P02281 34102105
    622835 7e8i:D (3.1) BS02 dna ? GO:0000786 ... P02281 34102105
    622836 7e8i:E (3.1) BS01 dna ? GO:0000786 ... P84233 34102105
    622837 7e8i:E (3.1) BS02 dna ? GO:0000786 ... P84233 34102105
    622838 7e8i:F (3.1) BS01 dna ? GO:0000786 ... P62799 34102105
    622839 7e8i:F (3.1) BS02 dna ? GO:0000786 ... P62799 34102105
    622840 7e8i:G (3.1) BS01 dna ? GO:0000786 ... P06897 34102105
    622841 7e8i:G (3.1) BS02 dna ? GO:0000786 ... P06897 34102105
    622842 7e8i:H (3.1) BS01 dna ? GO:0000786 ... P02281 34102105
    622843 7e8i:H (3.1) BS02 dna ? GO:0000786 ... P02281 34102105
    622844 7e8o:A (2.804) BS01 rna 3.1.26.5 GO:0001682 ... A0A1G2XP69 35484139
    622845 7e8o:A (2.804) BS02 CA 3.1.26.5 GO:0001682 ... A0A1G2XP69 35484139
    622846 7e8o:B (2.804) BS01 rna 3.1.26.5 GO:0001682 ... A0A1G2XP69 35484139
    622847 7e8o:B (2.804) BS02 CA 3.1.26.5 GO:0001682 ... A0A1G2XP69 35484139
    622848 7e8o:C (2.804) BS01 CA 3.1.26.5 GO:0001682 ... A0A1G2XP69 35484139
    622849 7e8o:D (2.804) BS01 CA 3.1.26.5 GO:0001682 ... A0A1G2XP69 35484139
    622850 7e8p:A (2.3) BS01 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622851 7e8p:A (2.3) BS02 NPO 1.14.14.9 GO:0004497 ... Q53008 34252455
    622852 7e8p:A (2.3) BS03 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622853 7e8p:B (2.3) BS01 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622854 7e8p:B (2.3) BS02 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622855 7e8p:C (2.3) BS01 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622856 7e8p:C (2.3) BS02 NPO 1.14.14.9 GO:0004497 ... Q53008 34252455
    622857 7e8p:C (2.3) BS03 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622858 7e8p:D (2.3) BS01 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622859 7e8p:D (2.3) BS02 FDA 1.14.14.9 GO:0004497 ... Q53008 34252455
    622860 7e8p:D (2.3) BS03 NPO 1.14.14.9 GO:0004497 ... Q53008 34252455
    622861 7e8q:A (2.3) BS01 FDA ? GO:0004497 ... Q53008 34252455
    622862 7e8q:A (2.3) BS02 NPO ? GO:0004497 ... Q53008 34252455
    622863 7e8q:A (2.3) BS03 NPO ? GO:0004497 ... Q53008 34252455
    622864 7e8q:A (2.3) BS04 FDA ? GO:0004497 ... Q53008 34252455
    622865 7e8q:B (2.3) BS01 FDA ? GO:0004497 ... Q53008 34252455
    622866 7e8q:B (2.3) BS02 FDA ? GO:0004497 ... Q53008 34252455
    622867 7e8q:B (2.3) BS03 NPO ? GO:0004497 ... Q53008 34252455
    622868 7e8q:C (2.3) BS01 FDA ? GO:0004497 ... Q53008 34252455
    622869 7e8q:C (2.3) BS02 NPO ? GO:0004497 ... Q53008 34252455
    622870 7e8q:C (2.3) BS03 NPO ? GO:0004497 ... Q53008 34252455
    622871 7e8q:C (2.3) BS04 FDA ? GO:0004497 ... Q53008 34252455
    622872 7e8q:C (2.3) BS05 NPO ? GO:0004497 ... Q53008 34252455
    622873 7e8q:D (2.3) BS01 FDA ? GO:0004497 ... Q53008 34252455
    622874 7e8q:D (2.3) BS02 NPO ? GO:0004497 ... Q53008 34252455
    622875 7e8q:D (2.3) BS03 FDA ? GO:0004497 ... Q53008 34252455
    622876 7e8q:D (2.3) BS04 NPO ? GO:0004497 ... Q53008 34252455
    622877 7e8z:A (2.55) BS01 ZN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 34762429
    622878 7e8z:A (2.55) BS02 HZX 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 34762429
    622879 7e96:A (2.4) BS01 HEM ? GO:0005344 ... Q7M419 34804547
    622880 7e96:A (2.4) BS02 OXY ? GO:0005344 ... Q7M419 34804547
    622881 7e96:A (2.4) BS03 HEM ? GO:0005344 ... Q7M419 34804547
    622882 7e96:B (2.4) BS01 HEM ? GO:0005344 ... Q7M413 34804547
    622883 7e96:B (2.4) BS02 OXY ? GO:0005344 ... Q7M413 34804547
    622884 7e96:C (2.4) BS01 HEM ? GO:0005344 ... Q7M418 34804547
    622885 7e96:C (2.4) BS02 OXY ? GO:0005344 ... Q7M418 34804547
    622886 7e96:D (2.4) BS01 HEM ? GO:0005344 ... B1Q3G1 34804547
    622887 7e96:D (2.4) BS02 HEM ? GO:0005344 ... B1Q3G1 34804547
    622888 7e97:A (2.7) BS01 HEM ? GO:0005344 ... Q7M419 34804547
    622889 7e97:A (2.7) BS02 OXY ? GO:0005344 ... Q7M419 34804547
    622890 7e97:A (2.7) BS03 HEM ? GO:0005344 ... Q7M419 34804547
    622891 7e97:B (2.7) BS01 HEM ? GO:0005344 ... Q7M413 34804547
    622892 7e97:B (2.7) BS02 OXY ? GO:0005344 ... Q7M413 34804547
    622893 7e97:C (2.7) BS01 HEM ? GO:0005344 ... Q7M418 34804547
    622894 7e97:D (2.7) BS01 HEM ? GO:0005344 ... B1Q3G1 34804547
    622895 7e97:D (2.7) BS02 HEM ? GO:0005344 ... B1Q3G1 34804547
    622896 7e98:A (2.2) BS01 HEM ? GO:0005344 ... Q7M419 34804547
    622897 7e98:A (2.2) BS02 OXY ? GO:0005344 ... Q7M419 34804547
    622898 7e98:A (2.2) BS03 HEM ? GO:0005344 ... Q7M419 34804547
    622899 7e98:B (2.2) BS01 HEM ? GO:0005344 ... Q7M413 34804547
    622900 7e98:B (2.2) BS02 OXY ? GO:0005344 ... Q7M413 34804547
    622901 7e98:C (2.2) BS01 HEM ? GO:0005344 ... Q7M418 34804547
    622902 7e98:D (2.2) BS01 HEM ? GO:0005344 ... B1Q3G1 34804547
    622903 7e98:D (2.2) BS02 HEM ? GO:0005344 ... B1Q3G1 34804547
    622904 7e98:D (2.2) BS03 OXY ? GO:0005344 ... B1Q3G1 34804547
    622905 7e99:A (2.1) BS01 HEM ? GO:0005344 ... Q7M419 34804547
    622906 7e99:A (2.1) BS02 OXY ? GO:0005344 ... Q7M419 34804547
    622907 7e99:A (2.1) BS03 HEM ? GO:0005344 ... Q7M419 34804547
    622908 7e99:B (2.1) BS01 HEM ? GO:0005344 ... Q7M413 34804547
    622909 7e99:B (2.1) BS02 OXY ? GO:0005344 ... Q7M413 34804547
    622910 7e99:C (2.1) BS01 HEM ? GO:0005344 ... Q7M418 34804547
    622911 7e99:C (2.1) BS02 OXY ? GO:0005344 ... Q7M418 34804547
    622912 7e99:D (2.1) BS01 HEM ? GO:0005344 ... B1Q3G1 34804547
    622913 7e99:D (2.1) BS02 HEM ? GO:0005344 ... B1Q3G1 34804547
    622914 7e99:D (2.1) BS03 OXY ? GO:0005344 ... B1Q3G1 34804547
    622915 7e9a:A (2.25) BS01 J00 3.5.2.6 GO:0008800 ... Q9F663 34259249
    622916 7e9a:B (2.25) BS01 J00 3.5.2.6 GO:0008800 ... Q9F663 34259249
    622917 7e9a:C (2.25) BS01 J00 3.5.2.6 GO:0008800 ... Q9F663 34259249
    622918 7e9a:D (2.25) BS01 J00 3.5.2.6 GO:0008800 ... Q9F663 34259249
    622919 7e9c:A (3.5) BS01 dna ? GO:0000500 ... P61830 N/A
    622920 7e9c:A (3.5) BS02 dna ? GO:0000500 ... P61830 N/A
    622921 7e9c:B (3.5) BS01 dna ? GO:0000500 ... P02309 N/A
    622922 7e9c:B (3.5) BS02 dna ? GO:0000500 ... P02309 N/A
    622923 7e9c:C (3.5) BS01 dna ? GO:0000786 ... P04912 N/A
    622924 7e9c:C (3.5) BS02 dna ? GO:0000786 ... P04912 N/A
    622925 7e9c:D (3.5) BS01 dna ? GO:0000786 ... P02294 N/A
    622926 7e9c:D (3.5) BS02 dna ? GO:0000786 ... P02294 N/A
    622927 7e9c:E (3.5) BS01 dna ? GO:0000500 ... P61830 N/A
    622928 7e9c:E (3.5) BS02 dna ? GO:0000500 ... P61830 N/A
    622929 7e9c:F (3.5) BS01 dna ? GO:0000500 ... P02309 N/A
    622930 7e9c:F (3.5) BS02 dna ? GO:0000500 ... P02309 N/A
    622931 7e9c:G (3.5) BS01 dna ? GO:0000786 ... P04912 N/A
    622932 7e9c:G (3.5) BS02 dna ? GO:0000786 ... P04912 N/A
    622933 7e9c:H (3.5) BS01 dna ? GO:0000786 ... P02294 N/A
    622934 7e9c:H (3.5) BS02 dna ? GO:0000786 ... P02294 N/A
    622935 7e9f:A (4.0) BS01 dna ? GO:0000500 ... P61830 N/A
    622936 7e9f:A (4.0) BS02 dna ? GO:0000500 ... P61830 N/A
    622937 7e9f:B (4.0) BS01 dna ? GO:0000500 ... P02309 N/A
    622938 7e9f:B (4.0) BS02 dna ? GO:0000500 ... P02309 N/A
    622939 7e9f:C (4.0) BS01 dna ? GO:0000786 ... P04912 N/A
    622940 7e9f:C (4.0) BS02 dna ? GO:0000786 ... P04912 N/A
    622941 7e9f:D (4.0) BS01 dna ? GO:0000786 ... P02294 N/A
    622942 7e9f:E (4.0) BS01 dna ? GO:0000500 ... P61830 N/A
    622943 7e9f:E (4.0) BS02 dna ? GO:0000500 ... P61830 N/A
    622944 7e9f:F (4.0) BS01 dna ? GO:0000500 ... P02309 N/A
    622945 7e9f:F (4.0) BS02 dna ? GO:0000500 ... P02309 N/A
    622946 7e9f:G (4.0) BS01 dna ? GO:0000786 ... P04912 N/A
    622947 7e9f:G (4.0) BS02 dna ? GO:0000786 ... P04912 N/A
    622948 7e9f:H (4.0) BS01 dna ? GO:0000786 ... P02294 N/A
    622949 7e9f:H (4.0) BS02 dna ? GO:0000786 ... P02294 N/A
    622950 7e9g:R (3.5) BS01 40F ? GO:0001641 ... Q14416 34135510 BindingDB: Ki=72nM, EC50=5.1nM, IC50=5.6nM
    622951 7e9g:R (3.5) BS02 HZR ? GO:0001641 ... Q14416 34135510 BindingDB: EC50=147nM, Ki=180nM, IC50=68nM
    622952 7e9g:S (3.5) BS01 40F ? GO:0001641 ... Q14416 34135510 BindingDB: Ki=72nM, EC50=5.1nM, IC50=5.6nM
    622953 7e9h:B (4.0) BS01 peptide ? GO:0001750 ... P62873 34135510
    622954 7e9h:R (4.0) BS01 SEP ? GO:0001640 ... Q14833 34135510
    622955 7e9h:S (4.0) BS01 SEP ? GO:0001640 ... Q14833 34135510
    622956 7e9j:A (2.4) BS01 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622957 7e9j:B (2.4) BS01 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622958 7e9k:A (2.05) BS01 peptide 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622959 7e9k:A (2.05) BS02 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622960 7e9k:B (2.05) BS01 peptide 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622961 7e9k:B (2.05) BS02 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622962 7e9k:D (2.05) BS01 peptide 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622963 7e9k:D (2.05) BS02 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622964 7e9k:D (2.05) BS03 MAN 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622965 7e9k:E (2.05) BS01 peptide 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622966 7e9k:E (2.05) BS02 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622967 7e9l:A (2.1) BS01 peptide 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622968 7e9l:A (2.1) BS02 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622969 7e9l:A (2.1) BS03 MAN 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622970 7e9l:B (2.1) BS01 peptide 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622971 7e9l:B (2.1) BS02 UDP 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    622972 7e9m:A (2.5) BS01 peptide ? GO:0000785 ... Q9Y657 N/A
    622973 7e9m:C (2.5) BS01 peptide ? GO:0000785 ... Q9Y657 N/A
    622974 7e9r:B (3.41) BS01 MG ? GO:0000287 ... A0A0A0RDR2 N/A
    622975 7e9r:C (3.41) BS01 MG ? GO:0000287 ... A0A0A0RDR2 N/A
    622976 7e9s:A (2.7) BS01 peptide 2.4.99.21 GO:0004576 ... O29867 34354228
    622977 7e9s:A (2.7) BS02 MN 2.4.99.21 GO:0004576 ... O29867 34354228
    622978 7e9s:A (2.7) BS03 J06 2.4.99.21 GO:0004576 ... O29867 34354228
    622979 7e9w:A (2.1) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 N/A
    622980 7e9w:B (2.1) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 N/A
    622981 7e9w:C (2.1) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 N/A
    622982 7e9w:D (2.1) BS01 MN 5.1.3.30 GO:0016853 ... B8I944 N/A
    622983 7e9y:A (2.25) BS01 CA ? GO:0006091 ... Q5SK82 34873165
    622984 7ea0:A (2.34) BS01 W6P 2.7.11.2 GO:0004672 ... Q15119 34274549
    622985 7ea1:A (2.7) BS01 peptide ? GO:0007276 ... Q9Y657 N/A
    622986 7ea1:C (2.7) BS01 peptide ? GO:0007276 ... Q9Y657 N/A
    622987 7ea4:A (1.95) BS01 CA ? GO:0016787 ... A0A0N7KZ58 N/A
    622988 7ea4:B (1.95) BS01 CA ? GO:0016787 ... A0A0N7KZ58 N/A
    622989 7ea5:A (3.3) BS01 dna ? GO:0000786 ... P84233 33972509
    622990 7ea5:A (3.3) BS02 dna ? GO:0000786 ... P84233 33972509
    622991 7ea5:B (3.3) BS01 dna ? GO:0003677 ... P62799 33972509
    622992 7ea5:C (3.3) BS01 dna ? GO:0000786 ... Q6AZJ8 33972509
    622993 7ea5:C (3.3) BS02 dna ? GO:0000786 ... Q6AZJ8 33972509
    622994 7ea5:D (3.3) BS01 dna ? GO:0000786 ... P02281 33972509
    622995 7ea5:D (3.3) BS02 dna ? GO:0000786 ... P02281 33972509
    622996 7ea5:E (3.3) BS01 dna ? GO:0000786 ... P84233 33972509
    622997 7ea5:E (3.3) BS02 dna ? GO:0000786 ... P84233 33972509
    622998 7ea5:F (3.3) BS01 dna ? GO:0003677 ... P62799 33972509
    622999 7ea5:F (3.3) BS02 dna ? GO:0003677 ... P62799 33972509
    623000 7ea5:G (3.3) BS01 dna ? GO:0000786 ... Q6AZJ8 33972509

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).