SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    624201 7el9:D (3.2) BS04 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624202 7el9:E (3.2) BS01 ZN ? GO:0003723 ... Q6UY77 34127846
    624203 7el9:E (3.2) BS02 ZN ? GO:0003723 ... Q6UY77 34127846
    624204 7ela:A (3.4) BS01 rna 2.7.7.48
    3.1.-.-
    GO:0000166 ... A0A097F4L1 34127846
    624205 7ela:A (3.4) BS02 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... A0A097F4L1 34127846
    624206 7ela:B (3.4) BS01 ZN ? GO:0003723 ... A0A097F4I8 34127846
    624207 7ela:B (3.4) BS02 ZN ? GO:0003723 ... A0A097F4I8 34127846
    624208 7elb:A (4.1) BS01 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624209 7elb:A (4.1) BS02 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624210 7elb:B (4.1) BS01 ZN ? GO:0003723 ... Q6UY77 34127846
    624211 7elb:B (4.1) BS02 ZN ? GO:0003723 ... Q6UY77 34127846
    624212 7elb:C (4.1) BS01 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624213 7elb:C (4.1) BS02 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624214 7elb:D (4.1) BS01 ZN ? GO:0003723 ... Q6UY77 34127846
    624215 7elc:A (3.1) BS01 rna 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624216 7elc:A (3.1) BS02 MN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624217 7elc:A (3.1) BS03 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624218 7elc:A (3.1) BS04 ZN 2.7.7.48
    3.1.-.-
    GO:0000166 ... Q6IVU0 34127846
    624219 7elc:B (3.1) BS01 ZN ? GO:0003723 ... Q6UY77 34127846
    624220 7elc:B (3.1) BS02 ZN ? GO:0003723 ... Q6UY77 34127846
    624221 7eld:A (4.6) BS01 rna 3.1.26.- GO:0003677 ... Q9SP32 34593993
    624222 7ele:A (4.9) BS01 rna 3.1.26.- GO:0003677 ... Q9SP32 34593993
    624223 7elg:A (1.599) BS01 8Z6 ? GO:0000045 ... Q9GZQ8 34590387
    624224 7elh:B (3.3) BS01 rna 2.7.7.48 GO:0001172 ... A0A0B5CSU4 34234134
    624225 7elh:B (3.3) BS02 rna 2.7.7.48 GO:0001172 ... A0A0B5CSU4 34234134
    624226 7elh:G (3.3) BS01 rna ? GO:0003724 ... F1ARN3 34234134
    624227 7elh:K (3.3) BS01 rna ? GO:0003724 ... F1ARN3 34234134
    624228 7elh:m (3.3) BS01 rna ? N/A F1ARN3 34234134
    624229 7elj:B (-1.00) BS01 peptide ? GO:0005179 ... P01317 34142060
    624230 7elj:B (-1.00) BS02 peptide ? GO:0005179 ... P01317 34142060
    624231 7elm:A (2.88) BS01 rna ? N/A A0A3A8DDU9 35411005
    624232 7elm:B (2.88) BS01 rna ? GO:0005515 ... Q02MM0 35411005
    624233 7elm:C (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624234 7elm:D (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624235 7elm:E (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624236 7elm:F (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624237 7elm:G (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624238 7elm:H (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624239 7elm:I (2.88) BS01 rna 3.1.-.- GO:0003723 ... Q02MM2 35411005
    624240 7elm:K (2.88) BS01 rna ? N/A A0A3A8DDU9 35411005
    624241 7elm:L (2.88) BS01 rna ? GO:0005515 ... Q02MM0 35411005
    624242 7elm:M (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624243 7elm:N (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624244 7elm:O (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624245 7elm:P (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624246 7elm:Q (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624247 7elm:R (2.88) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624248 7elm:S (2.88) BS01 rna 3.1.-.- GO:0003723 ... Q02MM2 35411005
    624249 7eln:A (3.0) BS01 rna ? N/A A0A3A8DDU9 35411005
    624250 7eln:A (3.0) BS02 dna ? N/A A0A3A8DDU9 35411005
    624251 7eln:B (3.0) BS01 rna ? GO:0005515 ... Q02MM0 35411005
    624252 7eln:C (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624253 7eln:D (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624254 7eln:E (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624255 7eln:F (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624256 7eln:G (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624257 7eln:H (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624258 7eln:I (3.0) BS01 rna 3.1.-.- GO:0003723 ... Q02MM2 35411005
    624259 7eln:L (3.0) BS01 rna ? GO:0005515 ... Q02MM0 35411005
    624260 7eln:L (3.0) BS02 dna ? GO:0005515 ... Q02MM0 35411005
    624261 7eln:M (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624262 7eln:N (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624263 7eln:O (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624264 7eln:P (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624265 7eln:Q (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624266 7eln:R (3.0) BS01 rna ? GO:0005515 ... Q02MM1 35411005
    624267 7eln:S (3.0) BS01 rna 3.1.-.- GO:0003723 ... Q02MM2 35411005
    624268 7eln:X (3.0) BS01 rna ? N/A A0A3A8DDU9 35411005
    624269 7eln:X (3.0) BS02 dna ? N/A A0A3A8DDU9 35411005
    624270 7elt:A (1.9) BS01 TYM 6.1.1.2 GO:0000166 ... P9WFT3 34908399
    624271 7elv:E (1.5) BS01 CA ? N/A Q58791 36301308
    624272 7elv:E (1.5) BS02 MN ? N/A Q58791 36301308
    624273 7elw:a (3.55) BS01 25L ? GO:0004540 ... A5H025 N/A
    624274 7elw:a (3.55) BS02 MYC ? GO:0004540 ... A5H025 N/A
    624275 7elw:a (3.55) BS03 25L ? GO:0004540 ... A5H025 N/A
    624276 7elw:b (3.55) BS01 25L ? GO:0004540 ... A5H025 N/A
    624277 7elw:b (3.55) BS02 25L ? GO:0004540 ... A5H025 N/A
    624278 7elw:b (3.55) BS03 MYC ? GO:0004540 ... A5H025 N/A
    624279 7em1:A (2.65) BS01 IDP 2.7.1.149 GO:0005515 ... P78356 35504278
    624280 7em1:A (2.65) BS02 CZU 2.7.1.149 GO:0005515 ... P78356 35504278
    624281 7em1:B (2.65) BS01 IDP 2.7.1.149 GO:0005515 ... P78356 35504278
    624282 7em2:A (2.6) BS01 CZC 2.7.1.149 GO:0005515 ... P78356 35504278
    624283 7em2:A (2.6) BS02 CZF 2.7.1.149 GO:0005515 ... P78356 35504278
    624284 7em2:B (2.6) BS01 CZC 2.7.1.149 GO:0005515 ... P78356 35504278
    624285 7em3:A (3.1) BS01 CX0 2.7.1.149 GO:0005515 ... P78356 35504278
    624286 7em3:A (3.1) BS02 CXC 2.7.1.149 GO:0005515 ... P78356 35504278
    624287 7em4:A (2.8) BS01 IDP 2.7.1.149 GO:0005515 ... P78356 35504278
    624288 7em4:A (2.8) BS02 CZU 2.7.1.149 GO:0005515 ... P78356 35504278
    624289 7em4:B (2.8) BS01 IDP 2.7.1.149 GO:0005515 ... P78356 35504278
    624290 7em5:A (2.8) BS01 CZC 2.7.1.149 GO:0005515 ... P78356 35504278
    624291 7em5:A (2.8) BS02 CZF 2.7.1.149 GO:0005515 ... P78356 35504278
    624292 7em5:B (2.8) BS01 CZC 2.7.1.149 GO:0005515 ... P78356 35504278
    624293 7em6:A (2.95) BS01 IDP 2.7.1.149 GO:0005515 ... P78356 35504278
    624294 7em6:A (2.95) BS02 CZU 2.7.1.149 GO:0005515 ... P78356 35504278
    624295 7em6:B (2.95) BS01 IDP 2.7.1.149 GO:0005515 ... P78356 35504278
    624296 7em7:A (3.45) BS01 CZC 2.7.1.149 GO:0005515 ... P78356 35504278
    624297 7em7:A (3.45) BS02 CZF 2.7.1.149 GO:0005515 ... P78356 35504278
    624298 7em8:A (3.05) BS01 CX0 2.7.1.149 GO:0005515 ... P78356 35504278
    624299 7em8:A (3.05) BS02 CXC 2.7.1.149 GO:0005515 ... P78356 35504278
    624300 7em9:A (1.9) BS01 peptide ? N/A O19075 34851145
    624301 7ema:A (1.8) BS01 peptide ? N/A O19075 34851145
    624302 7emb:A (1.97) BS01 peptide ? N/A O19075 34851145
    624303 7emc:A (1.9) BS01 peptide ? N/A O19075 34851145
    624304 7emc:D (1.9) BS01 peptide ? N/A O19075 34851145
    624305 7emc:G (1.9) BS01 peptide ? N/A O19075 34851145
    624306 7emd:A (1.7) BS01 peptide ? N/A O19075 34851145
    624307 7eme:A (1.78) BS01 FAD N/A GO:0016491 ... N/A N/A
    624308 7eme:B (1.78) BS01 FAD N/A GO:0016491 ... N/A N/A
    624309 7emf:0 (3.5) BS01 ZN ? GO:0000151 ... Q6P2C8 33958484
    624310 7emf:A (3.5) BS01 peptide ? GO:0000122 ... Q15648 33958484
    624311 7emf:P (3.5) BS01 ZN ? GO:0003713 ... Q9Y2X0 33958484
    624312 7emg:A (2.449) BS01 NDP N/A GO:0004316 ... N/A 34559867
    624313 7emg:B (2.449) BS01 NDP N/A GO:0004316 ... N/A 34559867
    624314 7emj:A (2.33) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36610121
    624315 7emj:A (2.33) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 36610121
    624316 7emj:B (2.33) BS01 J6L ? GO:0000226 ... P02554 36610121
    624317 7emj:B (2.33) BS02 GDP ? GO:0000226 ... P02554 36610121
    624318 7emj:C (2.33) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36610121
    624319 7emj:C (2.33) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 36610121
    624320 7emj:D (2.33) BS01 GTP ? GO:0000226 ... P02554 36610121
    624321 7emj:D (2.33) BS02 CA ? GO:0000226 ... P02554 36610121
    624322 7emj:F (2.33) BS01 ACP N/A GO:0036211 ... N/A 36610121
    624323 7emk:A (2.3) BS01 FE N/A GO:0006826 ... N/A 32792196
    624324 7emk:A (2.3) BS02 FE N/A GO:0006826 ... N/A 32792196
    624325 7emk:A (2.3) BS03 FE N/A GO:0006826 ... N/A 32792196
    624326 7emk:A (2.3) BS04 FE N/A GO:0006826 ... N/A 32792196
    624327 7emk:A (2.3) BS05 FE N/A GO:0006826 ... N/A 32792196
    624328 7eml:A (1.25) BS01 RIR ? GO:0005506 ... P02791 35005820
    624329 7eml:A (1.25) BS02 IR ? GO:0005506 ... P02791 35005820
    624330 7eml:A (1.25) BS03 IR ? GO:0005506 ... P02791 35005820
    624331 7emm:A (1.25) BS01 IR ? GO:0005506 ... P02791 35005820
    624332 7emm:A (1.25) BS02 IR ? GO:0005506 ... P02791 35005820
    624333 7emo:A (1.5) BS01 MQP ? GO:0046872 ... G3XD33 35352458
    624334 7emo:B (1.5) BS01 MQP ? GO:0046872 ... G3XD33 35352458
    624335 7emo:C (1.5) BS01 MQP ? GO:0046872 ... G3XD33 35352458
    624336 7emp:A (1.5) BS01 J7U ? GO:0046872 ... G3XD33 35352458
    624337 7emp:B (1.5) BS01 J7U ? GO:0046872 ... G3XD33 35352458
    624338 7emp:C (1.5) BS01 J7U ? GO:0046872 ... G3XD33 35352458
    624339 7emq:A (1.5) BS01 J7X ? GO:0046872 ... G3XD33 35352458
    624340 7emq:B (1.5) BS01 J7X ? GO:0046872 ... G3XD33 35352458
    624341 7emq:C (1.5) BS01 J7X ? GO:0046872 ... G3XD33 35352458
    624342 7emr:A (1.55) BS01 J83 ? GO:0046872 ... G3XD33 35352458
    624343 7emr:B (1.55) BS01 J83 ? GO:0046872 ... G3XD33 35352458
    624344 7emr:C (1.55) BS01 J83 ? GO:0046872 ... G3XD33 35352458
    624345 7ems:A (1.85) BS01 MQP ? N/A G3XD33 35352458
    624346 7ems:B (1.85) BS01 MQP ? N/A G3XD33 35352458
    624347 7ems:C (1.85) BS01 MQP ? N/A G3XD33 35352458
    624348 7emt:A (1.8) BS01 MQP ? N/A G3XD33 35352458
    624349 7emu:A (1.35) BS01 J7X ? N/A G3XD33 35352458
    624350 7emv:A (1.45) BS01 WXP ? N/A G3XD33 35352458
    624351 7emw:A (1.12) BS01 MQP ? N/A G3XD33 35352458
    624352 7emy:A (2.97) BS01 PNS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624353 7emy:A (2.97) BS02 MG 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624354 7emy:A (2.97) BS03 AMP 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624355 7emy:A (2.97) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624356 7emy:B (2.97) BS01 PNS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624357 7emy:B (2.97) BS02 MG 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624358 7emy:B (2.97) BS03 AMP 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624359 7emy:B (2.97) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624360 7emz:A (2.3) BS01 H3X 1.14.11.- GO:0016114 ... A0A2I1BSX0 34285212
    624361 7emz:A (2.3) BS02 FE 1.14.11.- GO:0016114 ... A0A2I1BSX0 34285212
    624362 7emz:B (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A2I1BSX0 34285212
    624363 7en1:A (3.47) BS01 PNS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624364 7en1:A (3.47) BS02 J9F 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624365 7en1:A (3.47) BS03 AMP 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624366 7en1:A (3.47) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624367 7en1:B (3.47) BS01 PNS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624368 7en1:B (3.47) BS02 MG 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624369 7en1:B (3.47) BS03 AMP 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624370 7en1:B (3.47) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624371 7en2:A (3.78) BS01 PNS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624372 7en2:A (3.78) BS02 AMP 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624373 7en2:B (3.78) BS01 PNS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624374 7en2:B (3.78) BS02 AMP 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    624375 7en3:A (2.643) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    624376 7en3:A (2.643) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    624377 7en3:B (2.643) BS01 GDP ? GO:0000226 ... Q6B856 34090207
    624378 7en3:B (2.643) BS02 J6R ? GO:0000226 ... Q6B856 34090207
    624379 7en3:C (2.643) BS01 J6R 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    624380 7en3:C (2.643) BS02 GTP 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    624381 7en3:C (2.643) BS03 CA 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    624382 7en3:D (2.643) BS01 GDP ? GO:0000226 ... Q6B856 34090207
    624383 7en3:D (2.643) BS02 J6R ? GO:0000226 ... Q6B856 34090207
    624384 7en3:F (2.643) BS01 ACP N/A GO:0036211 ... N/A 34090207
    624385 7en5:A (1.25) BS01 4QY ? GO:0003677 ... P77245 35640608
    624386 7en5:A (1.25) BS02 MXE ? GO:0003677 ... P77245 35640608
    624387 7en6:D (2.276) BS01 PO4 ? GO:0003677 ... P77245 35640608
    624388 7en7:A (1.22) BS01 J79 ? GO:0003677 ... P77245 35640608
    624389 7en8:A (1.83) BS01 J7R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36844503
    624390 7en8:B (1.83) BS01 J7R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36844503
    624391 7en9:A (1.9) BS01 J7O 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36844503
    624392 7ena:2 (4.07) BS01 ZN ? GO:0000438 ... Q13888 33958484
    624393 7ena:2 (4.07) BS02 ZN ? GO:0000438 ... Q13888 33958484
    624394 7ena:2 (4.07) BS03 ZN ? GO:0000438 ... Q13888 33958484
    624395 7ena:3 (4.07) BS01 ZN ? GO:0000438 ... Q13889 33958484
    624396 7ena:6 (4.07) BS01 dna 5.6.2.4 GO:0000112 ... P19447 33958484
    624397 7ena:7 (4.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33958484
    624398 7ena:BA (4.07) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 33958484
    624399 7ena:BA (4.07) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 33958484
    624400 7ena:BA (4.07) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33958484

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).